RNA–Protein interactions for RNA: ENST00000342740.5

CARMIL3-201, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CARMIL3, Length 4,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-201ENST00000342740 SYNE1Q8NF91 8797 aaKnown RBP5.21□□□□□ -1.58
CARMIL3-201ENST00000342740 KRTAP19-6Q3LI70 58 aa5.19□□□□□ -1.58
CARMIL3-201ENST00000342740 KRTAP12-4P60329 112 aa5.1□□□□□ -1.59
CARMIL3-201ENST00000342740 KRTAP9-2Q9BYQ4 174 aa5.05□□□□□ -1.6
CARMIL3-201ENST00000342740 MT1MQ8N339 61 aa5.02□□□□□ -1.61
CARMIL3-201ENST00000342740 KRTAP19-7Q3SYF9 63 aa4.99□□□□□ -1.61
CARMIL3-201ENST00000342740 LCE2DQ5TA82 110 aaPredicted RBP4.98□□□□□ -1.61
CARMIL3-201ENST00000342740 LCE3DQ9BYE3 92 aa4.95□□□□□ -1.62
CARMIL3-201ENST00000342740 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
CARMIL3-201ENST00000342740 LOC100996750A0A140TA64 210 aa4.89□□□□□ -1.63
CARMIL3-201ENST00000342740 LCE3EQ5T5B0 92 aa4.86□□□□□ -1.63
CARMIL3-201ENST00000342740 MT3P25713 68 aa4.69□□□□□ -1.66
CARMIL3-201ENST00000342740 KRTAP9-6A0A140TA67 174 aa4.68□□□□□ -1.66
CARMIL3-201ENST00000342740 MT4P47944 62 aa4.66□□□□□ -1.66
CARMIL3-201ENST00000342740 USH2AO75445 5202 aa4.65□□□□□ -1.67
CARMIL3-201ENST00000342740 OBSCNQ5VST9 7968 aa4.62□□□□□ -1.67
CARMIL3-201ENST00000342740 MT1AP04731 61 aa4.6□□□□□ -1.67
CARMIL3-201ENST00000342740 SYNE2Q8WXH0 6885 aaKnown RBP4.6□□□□□ -1.67
CARMIL3-201ENST00000342740 FCGBPQ9Y6R7 5405 aaPredicted RBP4.6□□□□□ -1.67
CARMIL3-201ENST00000342740 KRTAP9-6A8MVA2 160 aa4.58□□□□□ -1.68
CARMIL3-201ENST00000342740 KRTAP2-3P0C7H8 128 aa4.57□□□□□ -1.68
CARMIL3-201ENST00000342740 KRTAP2-4Q9BYR9 128 aa4.57□□□□□ -1.68
CARMIL3-201ENST00000342740 KRTAP2-1Q9BYU5 128 aa4.57□□□□□ -1.68
CARMIL3-201ENST00000342740 DSTQ03001 7570 aaKnown RBP4.54□□□□□ -1.68
CARMIL3-201ENST00000342740 LCE1AQ5T7P2 110 aa4.53□□□□□ -1.68
CARMIL3-201ENST00000342740 LCE5AQ5TCM9 118 aa4.52□□□□□ -1.69
CARMIL3-201ENST00000342740 KRTAP6-3Q3LI67 103 aa4.48□□□□□ -1.69
CARMIL3-201ENST00000342740 KRTAP4-9Q9BYQ8 210 aa4.48□□□□□ -1.69
CARMIL3-201ENST00000342740 KMT2DO14686 5537 aa4.45□□□□□ -1.7
CARMIL3-201ENST00000342740 KRTAP9-7A8MTY7 169 aa4.44□□□□□ -1.7
CARMIL3-201ENST00000342740 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.41□□□□□ -1.7
CARMIL3-201ENST00000342740 PRM1P04553 51 aa4.41□□□□□ -1.7
CARMIL3-201ENST00000342740 KRTAP6-1Q3LI64 71 aa4.4□□□□□ -1.71
CARMIL3-201ENST00000342740 LCE1DQ5T752 114 aa4.37□□□□□ -1.71
CARMIL3-201ENST00000342740 LCE1BQ5T7P3 118 aa4.34□□□□□ -1.71
CARMIL3-201ENST00000342740 KRTAP20-1Q3LI63 56 aa4.28□□□□□ -1.73
CARMIL3-201ENST00000342740 SSPOA2VEC9 5147 aa4.27□□□□□ -1.73
CARMIL3-201ENST00000342740 MACF1Q9UPN3 7388 aaKnown RBP4.27□□□□□ -1.73
CARMIL3-201ENST00000342740 KRTAP6-2Q3LI66 62 aa4.26□□□□□ -1.73
CARMIL3-201ENST00000342740 MUC12Q9UKN1 5478 aa4.25□□□□□ -1.73
CARMIL3-201ENST00000342740 KRTAP9-4Q9BYQ2 154 aa4.24□□□□□ -1.73
CARMIL3-201ENST00000342740 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
CARMIL3-201ENST00000342740 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
CARMIL3-201ENST00000342740 KRTAP5-9P26371 169 aa4.07□□□□□ -1.76
CARMIL3-201ENST00000342740 MDN1Q9NU22 5596 aa3.97□□□□□ -1.77
CARMIL3-201ENST00000342740 NEBP20929 6669 aa3.89□□□□□ -1.79
CARMIL3-201ENST00000342740 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
CARMIL3-201ENST00000342740 KRTAP20-2Q3LI61 65 aa3.66□□□□□ -1.82
CARMIL3-201ENST00000342740 MUC19Q7Z5P9 8384 aa3.64□□□□□ -1.83
CARMIL3-201ENST00000342740 LCE1CQ5T751 118 aa3.54□□□□□ -1.84
CARMIL3-201ENST00000342740 LCE1EQ5T753 118 aa3.54□□□□□ -1.84
CARMIL3-201ENST00000342740 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
CARMIL3-201ENST00000342740 KRTAP5-5Q701N2 237 aaPredicted RBP3.48□□□□□ -1.85
CARMIL3-201ENST00000342740 KRTAP9-9Q9BYP9 154 aa3.45□□□□□ -1.86
CARMIL3-201ENST00000342740 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
CARMIL3-201ENST00000342740 KRTAP5-4Q6L8H1 288 aa3.39□□□□□ -1.87
CARMIL3-201ENST00000342740 KRTAP4-11Q9BYQ6 195 aa3.3□□□□□ -1.88
CARMIL3-201ENST00000342740 MUC5ACP98088 5654 aa3.24□□□□□ -1.89
CARMIL3-201ENST00000342740 HMCN1Q96RW7 5635 aa3.13□□□□□ -1.91
CARMIL3-201ENST00000342740 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
CARMIL3-201ENST00000342740 KRTAP4-12Q9BQ66 201 aa3.11□□□□□ -1.91
CARMIL3-201ENST00000342740 KRTAP4-2Q9BYR5 136 aa3.11□□□□□ -1.91
CARMIL3-201ENST00000342740 KRTAP5-3Q6L8H2 238 aa3.03□□□□□ -1.92
CARMIL3-201ENST00000342740 AHNAK2Q8IVF2 5795 aa2.98□□□□□ -1.93
CARMIL3-201ENST00000342740 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
CARMIL3-201ENST00000342740 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
CARMIL3-201ENST00000342740 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
CARMIL3-201ENST00000342740 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
CARMIL3-201ENST00000342740 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
CARMIL3-201ENST00000342740 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
CARMIL3-201ENST00000342740 KRTAP5-11Q6L8G4 156 aa2.46□□□□□ -2.02
CARMIL3-201ENST00000342740 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.03
CARMIL3-201ENST00000342740 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
CARMIL3-201ENST00000342740 PHGR1C9JFL3 82 aa2.23□□□□□ -2.05
CARMIL3-201ENST00000342740 KRTAP5-7Q6L8G8 165 aa2.1□□□□□ -2.07
CARMIL3-201ENST00000342740 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
CARMIL3-201ENST00000342740 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 253 ms