RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 KRTAP19-8Q3LI54 63 aa2.99□□□□□ -1.93
RTN3-202ENST00000339997 FCGBPQ9Y6R7 5405 aaPredicted RBP2.99□□□□□ -1.93
RTN3-202ENST00000339997 SPRR5A0A1B0GTR4 108 aa2.98□□□□□ -1.93
RTN3-202ENST00000339997 KRTAP9-8Q9BYQ0 159 aa2.98□□□□□ -1.93
RTN3-202ENST00000339997 KRTAP9-6A0A140TA67 174 aa2.97□□□□□ -1.93
RTN3-202ENST00000339997 KRTAP9-2Q9BYQ4 174 aa2.96□□□□□ -1.94
RTN3-202ENST00000339997 SPRR2DP22532 72 aa2.94□□□□□ -1.94
RTN3-202ENST00000339997 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
RTN3-202ENST00000339997 SYNE2Q8WXH0 6885 aaKnown RBP2.92□□□□□ -1.94
RTN3-202ENST00000339997 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.95
RTN3-202ENST00000339997 KRTAP9-3Q9BYQ3 159 aa2.87□□□□□ -1.95
RTN3-202ENST00000339997 LOC100996750A0A140TA64 210 aa2.86□□□□□ -1.95
RTN3-202ENST00000339997 MT3P25713 68 aa2.86□□□□□ -1.95
RTN3-202ENST00000339997 MACF1Q9UPN3 7388 aaKnown RBP2.84□□□□□ -1.95
RTN3-202ENST00000339997 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.96
RTN3-202ENST00000339997 MUC19Q7Z5P9 8384 aa2.79□□□□□ -1.96
RTN3-202ENST00000339997 MT1LQ93083 61 aa2.78□□□□□ -1.96
RTN3-202ENST00000339997 LCE5AQ5TCM9 118 aa2.76□□□□□ -1.97
RTN3-202ENST00000339997 KRTAP4-9Q9BYQ8 210 aa2.76□□□□□ -1.97
RTN3-202ENST00000339997 KRTAP2-2Q9BYT5 123 aa2.75□□□□□ -1.97
RTN3-202ENST00000339997 PRM1P04553 51 aa2.74□□□□□ -1.97
RTN3-202ENST00000339997 MT1EP04732 61 aa2.74□□□□□ -1.97
RTN3-202ENST00000339997 KRTAP19-3Q7Z4W3 81 aa2.73□□□□□ -1.97
RTN3-202ENST00000339997 LCE1BQ5T7P3 118 aa2.72□□□□□ -1.97
RTN3-202ENST00000339997 MUC12Q9UKN1 5478 aa2.71□□□□□ -1.97
RTN3-202ENST00000339997 KRTAP9-7A8MTY7 169 aa2.7□□□□□ -1.98
RTN3-202ENST00000339997 GPR98Q8WXG9 6306 aa2.67□□□□□ -1.98
RTN3-202ENST00000339997 LCE1DQ5T752 114 aa2.66□□□□□ -1.98
RTN3-202ENST00000339997 MT1MQ8N339 61 aa2.65□□□□□ -1.99
RTN3-202ENST00000339997 KRTAP9-6A8MVA2 160 aa2.62□□□□□ -1.99
RTN3-202ENST00000339997 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
RTN3-202ENST00000339997 MDN1Q9NU22 5596 aa2.61□□□□□ -1.99
RTN3-202ENST00000339997 MT4P47944 62 aa2.61□□□□□ -1.99
RTN3-202ENST00000339997 KRTAP19-7Q3SYF9 63 aa2.61□□□□□ -1.99
RTN3-202ENST00000339997 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
RTN3-202ENST00000339997 KRTAP9-4Q9BYQ2 154 aa2.6□□□□□ -1.99
RTN3-202ENST00000339997 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.59□□□□□ -1.99
RTN3-202ENST00000339997 KRTAP6-3Q3LI67 103 aa2.58□□□□□ -2
RTN3-202ENST00000339997 LCE1AQ5T7P2 110 aa2.54□□□□□ -2
RTN3-202ENST00000339997 LCE1EQ5T753 118 aa2.53□□□□□ -2
RTN3-202ENST00000339997 KRTAP20-1Q3LI63 56 aa2.53□□□□□ -2
RTN3-202ENST00000339997 KRTAP2-3P0C7H8 128 aa2.5□□□□□ -2.01
RTN3-202ENST00000339997 KRTAP2-4Q9BYR9 128 aa2.5□□□□□ -2.01
RTN3-202ENST00000339997 KRTAP2-1Q9BYU5 128 aa2.5□□□□□ -2.01
RTN3-202ENST00000339997 LCE1CQ5T751 118 aa2.47□□□□□ -2.01
RTN3-202ENST00000339997 KRTAP9-9Q9BYP9 154 aa2.45□□□□□ -2.02
RTN3-202ENST00000339997 KRTAP6-1Q3LI64 71 aa2.42□□□□□ -2.02
RTN3-202ENST00000339997 KRTAP6-2Q3LI66 62 aa2.4□□□□□ -2.03
RTN3-202ENST00000339997 MT1AP04731 61 aa2.39□□□□□ -2.03
RTN3-202ENST00000339997 LCE4AQ5TA78 99 aa2.36□□□□□ -2.03
RTN3-202ENST00000339997 KRTAP5-9P26371 169 aa2.23□□□□□ -2.05
RTN3-202ENST00000339997 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
RTN3-202ENST00000339997 NEBP20929 6669 aa2.15□□□□□ -2.07
RTN3-202ENST00000339997 KRTAP4-6Q9BYQ5 205 aa2.12□□□□□ -2.07
RTN3-202ENST00000339997 KRTAP4-11Q9BYQ6 195 aa2.1□□□□□ -2.07
RTN3-202ENST00000339997 MUC5ACP98088 5654 aa2□□□□□ -2.09
RTN3-202ENST00000339997 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
RTN3-202ENST00000339997 HMCN1Q96RW7 5635 aa1.96□□□□□ -2.1
RTN3-202ENST00000339997 KRTAP20-2Q3LI61 65 aa1.91□□□□□ -2.1
RTN3-202ENST00000339997 KRTAP5-4Q6L8H1 288 aa1.88□□□□□ -2.11
RTN3-202ENST00000339997 KRTAP4-12Q9BQ66 201 aa1.86□□□□□ -2.11
RTN3-202ENST00000339997 KRTAP4-2Q9BYR5 136 aa1.86□□□□□ -2.11
RTN3-202ENST00000339997 KRTAP5-3Q6L8H2 238 aa1.75□□□□□ -2.13
RTN3-202ENST00000339997 KRTAP5-2Q701N4 177 aa1.75□□□□□ -2.13
RTN3-202ENST00000339997 AHNAK2Q8IVF2 5795 aa1.7□□□□□ -2.14
RTN3-202ENST00000339997 KRTAP5-7Q6L8G8 165 aa1.7□□□□□ -2.14
RTN3-202ENST00000339997 KRTAP5-10Q6L8G5 202 aa1.66□□□□□ -2.14
RTN3-202ENST00000339997 KRTAP5-1Q6L8H4 278 aa1.6□□□□□ -2.15
RTN3-202ENST00000339997 AHNAKQ09666 5890 aaKnown RBP1.53□□□□□ -2.16
RTN3-202ENST00000339997 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
RTN3-202ENST00000339997 MUC5BQ9HC84 5762 aaPredicted RBP1.45□□□□□ -2.18
RTN3-202ENST00000339997 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
RTN3-202ENST00000339997 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
RTN3-202ENST00000339997 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.37□□□□□ -2.19
RTN3-202ENST00000339997 KRTAP5-11Q6L8G4 156 aa1.31□□□□□ -2.2
RTN3-202ENST00000339997 KRTAP21-1Q3LI58 79 aa1.26□□□□□ -2.21
RTN3-202ENST00000339997 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 58.3 ms