RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 SYNE2Q8WXH0 6885 aaKnown RBP3.77□□□□□ -1.81
USP47-202ENST00000339865 LRP2P98164 4655 aa3.76□□□□□ -1.81
USP47-202ENST00000339865 KRTAP9-3Q9BYQ3 159 aa3.73□□□□□ -1.81
USP47-202ENST00000339865 MT1MQ8N339 61 aa3.71□□□□□ -1.81
USP47-202ENST00000339865 RYR1P21817 5038 aa3.7□□□□□ -1.82
USP47-202ENST00000339865 DNHD1Q96M86 4753 aa3.63□□□□□ -1.83
USP47-202ENST00000339865 KRTAP2-3P0C7H8 128 aa3.62□□□□□ -1.83
USP47-202ENST00000339865 KRTAP2-4Q9BYR9 128 aa3.62□□□□□ -1.83
USP47-202ENST00000339865 KRTAP2-1Q9BYU5 128 aa3.59□□□□□ -1.83
USP47-202ENST00000339865 KRTAP9-9Q9BYP9 154 aa3.57□□□□□ -1.84
USP47-202ENST00000339865 KRTAP6-2Q3LI66 62 aa3.57□□□□□ -1.84
USP47-202ENST00000339865 MUC17Q685J3 4493 aa3.55□□□□□ -1.84
USP47-202ENST00000339865 SYNE1Q8NF91 8797 aaKnown RBP3.45□□□□□ -1.86
USP47-202ENST00000339865 MT1AP04731 61 aa3.44□□□□□ -1.86
USP47-202ENST00000339865 HYDINQ4G0P3 5121 aa3.42□□□□□ -1.86
USP47-202ENST00000339865 KRTAP2-2Q9BYT5 123 aa3.41□□□□□ -1.86
USP47-202ENST00000339865 KRTAP20-2Q3LI61 65 aa3.38□□□□□ -1.87
USP47-202ENST00000339865 RYR3Q15413 4870 aa3.36□□□□□ -1.87
USP47-202ENST00000339865 KMT2CQ8NEZ4 4911 aaKnown RBP3.35□□□□□ -1.87
USP47-202ENST00000339865 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.34□□□□□ -1.87
USP47-202ENST00000339865 KRTAP19-7Q3SYF9 63 aa3.33□□□□□ -1.88
USP47-202ENST00000339865 KRTAP6-1Q3LI64 71 aa3.29□□□□□ -1.88
USP47-202ENST00000339865 KRTAP6-3Q3LI67 103 aa3.23□□□□□ -1.89
USP47-202ENST00000339865 KRTAP9-4Q9BYQ2 154 aa3.22□□□□□ -1.89
USP47-202ENST00000339865 FSIP2Q5CZC0 6907 aa3.21□□□□□ -1.9
USP47-202ENST00000339865 KRTAP19-2Q3LHN2 52 aa3.2□□□□□ -1.9
USP47-202ENST00000339865 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.91
USP47-202ENST00000339865 KRTAP4-11Q9BYQ6 195 aa3.14□□□□□ -1.91
USP47-202ENST00000339865 KRTAP4-6Q9BYQ5 205 aa3.14□□□□□ -1.91
USP47-202ENST00000339865 HMCN2Q8NDA2 5059 aa3.13□□□□□ -1.91
USP47-202ENST00000339865 HERC2O95714 4834 aa3.12□□□□□ -1.91
USP47-202ENST00000339865 KRTAP4-12Q9BQ66 201 aa3.07□□□□□ -1.92
USP47-202ENST00000339865 KRTAP4-2Q9BYR5 136 aa3.07□□□□□ -1.92
USP47-202ENST00000339865 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
USP47-202ENST00000339865 KRTAP4-4Q9BYR3 166 aa3.04□□□□□ -1.92
USP47-202ENST00000339865 DSTQ03001 7570 aaKnown RBP3□□□□□ -1.93
USP47-202ENST00000339865 RYR2Q92736 4967 aa2.96□□□□□ -1.93
USP47-202ENST00000339865 BIRC6Q9NR09 4857 aa2.96□□□□□ -1.94
USP47-202ENST00000339865 KMT2DO14686 5537 aa2.96□□□□□ -1.94
USP47-202ENST00000339865 HERC1Q15751 4861 aa2.92□□□□□ -1.94
USP47-202ENST00000339865 MUC2Q02817 5179 aa2.83□□□□□ -1.96
USP47-202ENST00000339865 KIAA1109Q2LD37 5005 aa2.83□□□□□ -1.96
USP47-202ENST00000339865 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
USP47-202ENST00000339865 PCLOQ9Y6V0 5065 aa2.75□□□□□ -1.97
USP47-202ENST00000339865 FCGBPQ9Y6R7 5405 aaPredicted RBP2.71□□□□□ -1.97
USP47-202ENST00000339865 UBR4Q5T4S7 5183 aa2.64□□□□□ -1.99
USP47-202ENST00000339865 MACF1Q9UPN3 7388 aaKnown RBP2.63□□□□□ -1.99
USP47-202ENST00000339865 FAT4Q6V0I7 4981 aa2.57□□□□□ -2
USP47-202ENST00000339865 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
USP47-202ENST00000339865 EPPK1P58107 5090 aaKnown RBP2.47□□□□□ -2.01
USP47-202ENST00000339865 RNF213Q63HN8 5207 aa2.47□□□□□ -2.01
USP47-202ENST00000339865 KRTAP5-5Q701N2 237 aaPredicted RBP2.45□□□□□ -2.02
USP47-202ENST00000339865 ABCA13Q86UQ4 5058 aa2.43□□□□□ -2.02
USP47-202ENST00000339865 SSPOA2VEC9 5147 aa2.4□□□□□ -2.02
USP47-202ENST00000339865 KRTAP5-4Q6L8H1 288 aa2.23□□□□□ -2.05
USP47-202ENST00000339865 NEBP20929 6669 aa2.22□□□□□ -2.05
USP47-202ENST00000339865 USH2AO75445 5202 aa2.21□□□□□ -2.06
USP47-202ENST00000339865 MUC12Q9UKN1 5478 aa2.17□□□□□ -2.06
USP47-202ENST00000339865 KRTAP5-9P26371 169 aa2.14□□□□□ -2.07
USP47-202ENST00000339865 KRTAP5-3Q6L8H2 238 aa2.1□□□□□ -2.07
USP47-202ENST00000339865 MDN1Q9NU22 5596 aa2.07□□□□□ -2.08
USP47-202ENST00000339865 KRTAP5-8O75690 187 aa1.95□□□□□ -2.1
USP47-202ENST00000339865 KRTAP5-2Q701N4 177 aa1.91□□□□□ -2.1
USP47-202ENST00000339865 KRTAP5-10Q6L8G5 202 aa1.84□□□□□ -2.11
USP47-202ENST00000339865 MUC5ACP98088 5654 aa1.83□□□□□ -2.12
USP47-202ENST00000339865 KRTAP21-1Q3LI58 79 aa1.7□□□□□ -2.14
USP47-202ENST00000339865 GPR98Q8WXG9 6306 aa1.68□□□□□ -2.14
USP47-202ENST00000339865 HMCN1Q96RW7 5635 aa1.64□□□□□ -2.15
USP47-202ENST00000339865 KRTAP5-1Q6L8H4 278 aa1.61□□□□□ -2.15
USP47-202ENST00000339865 MUC5BQ9HC84 5762 aaPredicted RBP1.57□□□□□ -2.16
USP47-202ENST00000339865 KRTAP5-11Q6L8G4 156 aa1.47□□□□□ -2.17
USP47-202ENST00000339865 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
USP47-202ENST00000339865 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
USP47-202ENST00000339865 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.27□□□□□ -2.21
USP47-202ENST00000339865 AHNAK2Q8IVF2 5795 aa1.2□□□□□ -2.22
USP47-202ENST00000339865 AHNAKQ09666 5890 aaKnown RBP1.19□□□□□ -2.22
USP47-202ENST00000339865 KRTAP5-7Q6L8G8 165 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 293.3 ms