RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
NPHP3-201ENST00000337331 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
NPHP3-201ENST00000337331 KRTAP2-1Q9BYU5 128 aa5.26□□□□□ -1.57
NPHP3-201ENST00000337331 MT1LQ93083 61 aa5.22□□□□□ -1.57
NPHP3-201ENST00000337331 MT1EP04732 61 aa5.17□□□□□ -1.58
NPHP3-201ENST00000337331 KRTAP19-3Q7Z4W3 81 aa5.16□□□□□ -1.58
NPHP3-201ENST00000337331 LCE3DQ9BYE3 92 aa5.14□□□□□ -1.59
NPHP3-201ENST00000337331 KRTAP9-2Q9BYQ4 174 aa5.09□□□□□ -1.59
NPHP3-201ENST00000337331 SPRR2DP22532 72 aa5.08□□□□□ -1.6
NPHP3-201ENST00000337331 LCE3EQ5T5B0 92 aa5.06□□□□□ -1.6
NPHP3-201ENST00000337331 LOC100996750A0A140TA64 210 aa5.05□□□□□ -1.6
NPHP3-201ENST00000337331 PRM1P04553 51 aa5□□□□□ -1.61
NPHP3-201ENST00000337331 KRTAP19-6Q3LI70 58 aa4.99□□□□□ -1.61
NPHP3-201ENST00000337331 LCE2DQ5TA82 110 aaPredicted RBP4.99□□□□□ -1.61
NPHP3-201ENST00000337331 USH2AO75445 5202 aa4.98□□□□□ -1.61
NPHP3-201ENST00000337331 MT1MQ8N339 61 aa4.98□□□□□ -1.61
NPHP3-201ENST00000337331 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
NPHP3-201ENST00000337331 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
NPHP3-201ENST00000337331 KMT2DO14686 5537 aa4.93□□□□□ -1.62
NPHP3-201ENST00000337331 KRTAP4-9Q9BYQ8 210 aa4.9□□□□□ -1.63
NPHP3-201ENST00000337331 FCGBPQ9Y6R7 5405 aaPredicted RBP4.89□□□□□ -1.63
NPHP3-201ENST00000337331 DSTQ03001 7570 aaKnown RBP4.79□□□□□ -1.64
NPHP3-201ENST00000337331 KRTAP9-6A0A140TA67 174 aa4.73□□□□□ -1.65
NPHP3-201ENST00000337331 MT3P25713 68 aa4.72□□□□□ -1.65
NPHP3-201ENST00000337331 SSPOA2VEC9 5147 aa4.71□□□□□ -1.65
NPHP3-201ENST00000337331 KRTAP9-7A8MTY7 169 aa4.69□□□□□ -1.66
NPHP3-201ENST00000337331 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
NPHP3-201ENST00000337331 MT1AP04731 61 aa4.59□□□□□ -1.67
NPHP3-201ENST00000337331 MT4P47944 62 aa4.59□□□□□ -1.68
NPHP3-201ENST00000337331 MACF1Q9UPN3 7388 aaKnown RBP4.51□□□□□ -1.69
NPHP3-201ENST00000337331 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.47□□□□□ -1.69
NPHP3-201ENST00000337331 KRTAP6-2Q3LI66 62 aa4.45□□□□□ -1.7
NPHP3-201ENST00000337331 LCE1DQ5T752 114 aa4.44□□□□□ -1.7
NPHP3-201ENST00000337331 LCE1BQ5T7P3 118 aa4.44□□□□□ -1.7
NPHP3-201ENST00000337331 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
NPHP3-201ENST00000337331 KRTAP6-1Q3LI64 71 aa4.41□□□□□ -1.7
NPHP3-201ENST00000337331 LCE1AQ5T7P2 110 aa4.4□□□□□ -1.7
NPHP3-201ENST00000337331 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
NPHP3-201ENST00000337331 KRTAP6-3Q3LI67 103 aa4.36□□□□□ -1.71
NPHP3-201ENST00000337331 MUC19Q7Z5P9 8384 aa4.25□□□□□ -1.73
NPHP3-201ENST00000337331 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
NPHP3-201ENST00000337331 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
NPHP3-201ENST00000337331 KRTAP9-4Q9BYQ2 154 aa4.19□□□□□ -1.74
NPHP3-201ENST00000337331 KRTAP5-5Q701N2 237 aaPredicted RBP4.14□□□□□ -1.75
NPHP3-201ENST00000337331 KRTAP5-9P26371 169 aa4.13□□□□□ -1.75
NPHP3-201ENST00000337331 MDN1Q9NU22 5596 aa4.08□□□□□ -1.76
NPHP3-201ENST00000337331 KRTAP20-1Q3LI63 56 aa4.06□□□□□ -1.76
NPHP3-201ENST00000337331 NEBP20929 6669 aa3.94□□□□□ -1.78
NPHP3-201ENST00000337331 LCE4AQ5TA78 99 aa3.93□□□□□ -1.78
NPHP3-201ENST00000337331 KRTAP4-11Q9BYQ6 195 aa3.76□□□□□ -1.81
NPHP3-201ENST00000337331 KRTAP4-6Q9BYQ5 205 aa3.66□□□□□ -1.82
NPHP3-201ENST00000337331 LCE1CQ5T751 118 aa3.6□□□□□ -1.83
NPHP3-201ENST00000337331 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
NPHP3-201ENST00000337331 GPR98Q8WXG9 6306 aa3.54□□□□□ -1.84
NPHP3-201ENST00000337331 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
NPHP3-201ENST00000337331 KRTAP5-4Q6L8H1 288 aa3.34□□□□□ -1.88
NPHP3-201ENST00000337331 KRTAP9-9Q9BYP9 154 aa3.3□□□□□ -1.88
NPHP3-201ENST00000337331 MUC5ACP98088 5654 aa3.29□□□□□ -1.88
NPHP3-201ENST00000337331 HMCN1Q96RW7 5635 aa3.27□□□□□ -1.89
NPHP3-201ENST00000337331 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
NPHP3-201ENST00000337331 KRTAP4-12Q9BQ66 201 aa3.12□□□□□ -1.91
NPHP3-201ENST00000337331 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
NPHP3-201ENST00000337331 KRTAP5-3Q6L8H2 238 aa3.03□□□□□ -1.93
NPHP3-201ENST00000337331 KRTAP5-2Q701N4 177 aa2.98□□□□□ -1.93
NPHP3-201ENST00000337331 KRTAP5-10Q6L8G5 202 aa2.97□□□□□ -1.93
NPHP3-201ENST00000337331 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
NPHP3-201ENST00000337331 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
NPHP3-201ENST00000337331 KRTAP5-1Q6L8H4 278 aa2.65□□□□□ -1.98
NPHP3-201ENST00000337331 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
NPHP3-201ENST00000337331 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
NPHP3-201ENST00000337331 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
NPHP3-201ENST00000337331 AHNAKQ09666 5890 aaKnown RBP2.44□□□□□ -2.02
NPHP3-201ENST00000337331 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
NPHP3-201ENST00000337331 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
NPHP3-201ENST00000337331 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
NPHP3-201ENST00000337331 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
NPHP3-201ENST00000337331 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 39.2 ms