RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MT1MQ8N339 61 aa3.87□□□□□ -1.79
SDC3-201ENST00000336798 KRTAP19-6Q3LI70 58 aa3.86□□□□□ -1.79
SDC3-201ENST00000336798 PKHD1P08F94 4074 aa3.85□□□□□ -1.79
SDC3-201ENST00000336798 LRP2P98164 4655 aa3.82□□□□□ -1.8
SDC3-201ENST00000336798 EPPK1P58107 5090 aaKnown RBP3.82□□□□□ -1.8
SDC3-201ENST00000336798 KRTAP9-7A8MTY7 169 aa3.81□□□□□ -1.8
SDC3-201ENST00000336798 KRTAP4-9Q9BYQ8 210 aa3.77□□□□□ -1.81
SDC3-201ENST00000336798 LCE5AQ5TCM9 118 aa3.76□□□□□ -1.81
SDC3-201ENST00000336798 KRTAP2-3P0C7H8 128 aa3.69□□□□□ -1.82
SDC3-201ENST00000336798 KRTAP2-4Q9BYR9 128 aa3.69□□□□□ -1.82
SDC3-201ENST00000336798 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
SDC3-201ENST00000336798 KRTAP19-2Q3LHN2 52 aa3.68□□□□□ -1.82
SDC3-201ENST00000336798 KRTAP6-3Q3LI67 103 aa3.67□□□□□ -1.82
SDC3-201ENST00000336798 KMT2CQ8NEZ4 4911 aaKnown RBP3.67□□□□□ -1.82
SDC3-201ENST00000336798 FLGP20930 4061 aaPredicted RBP3.67□□□□□ -1.82
SDC3-201ENST00000336798 LCE2AQ5TA79 106 aaPredicted RBP3.65□□□□□ -1.82
SDC3-201ENST00000336798 FSIP2Q5CZC0 6907 aa3.65□□□□□ -1.82
SDC3-201ENST00000336798 SYNE2Q8WXH0 6885 aaKnown RBP3.63□□□□□ -1.83
SDC3-201ENST00000336798 ABCA13Q86UQ4 5058 aa3.57□□□□□ -1.84
SDC3-201ENST00000336798 KRTAP2-1Q9BYU5 128 aa3.56□□□□□ -1.84
SDC3-201ENST00000336798 LCE1AQ5T7P2 110 aa3.56□□□□□ -1.84
SDC3-201ENST00000336798 MT1AP04731 61 aa3.55□□□□□ -1.84
SDC3-201ENST00000336798 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
SDC3-201ENST00000336798 UBR4Q5T4S7 5183 aa3.54□□□□□ -1.84
SDC3-201ENST00000336798 KRTAP2-2Q9BYT5 123 aa3.53□□□□□ -1.84
SDC3-201ENST00000336798 LCE1CQ5T751 118 aa3.52□□□□□ -1.85
SDC3-201ENST00000336798 LCE1EQ5T753 118 aa3.52□□□□□ -1.85
SDC3-201ENST00000336798 LCE1FQ5T754 118 aa3.52□□□□□ -1.85
SDC3-201ENST00000336798 KRTAP19-7Q3SYF9 63 aa3.51□□□□□ -1.85
SDC3-201ENST00000336798 LCE4AQ5TA78 99 aa3.49□□□□□ -1.85
SDC3-201ENST00000336798 KRTAP6-2Q3LI66 62 aa3.47□□□□□ -1.85
SDC3-201ENST00000336798 KRTAP6-1Q3LI64 71 aa3.43□□□□□ -1.86
SDC3-201ENST00000336798 MUC2Q02817 5179 aa3.4□□□□□ -1.87
SDC3-201ENST00000336798 RNF213Q63HN8 5207 aa3.37□□□□□ -1.87
SDC3-201ENST00000336798 FAT4Q6V0I7 4981 aa3.37□□□□□ -1.87
SDC3-201ENST00000336798 HMCN2Q8NDA2 5059 aa3.33□□□□□ -1.88
SDC3-201ENST00000336798 KRTAP9-4Q9BYQ2 154 aa3.33□□□□□ -1.88
SDC3-201ENST00000336798 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
SDC3-201ENST00000336798 OBSCNQ5VST9 7968 aa3.25□□□□□ -1.89
SDC3-201ENST00000336798 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
SDC3-201ENST00000336798 DSTQ03001 7570 aaKnown RBP3.05□□□□□ -1.92
SDC3-201ENST00000336798 MACF1Q9UPN3 7388 aaKnown RBP3.04□□□□□ -1.92
SDC3-201ENST00000336798 FCGBPQ9Y6R7 5405 aaPredicted RBP2.99□□□□□ -1.93
SDC3-201ENST00000336798 USH2AO75445 5202 aa2.99□□□□□ -1.93
SDC3-201ENST00000336798 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
SDC3-201ENST00000336798 NEBP20929 6669 aa2.97□□□□□ -1.93
SDC3-201ENST00000336798 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
SDC3-201ENST00000336798 KRTAP5-9P26371 169 aa2.89□□□□□ -1.95
SDC3-201ENST00000336798 KRTAP20-2Q3LI61 65 aa2.89□□□□□ -1.95
SDC3-201ENST00000336798 KMT2DO14686 5537 aa2.88□□□□□ -1.95
SDC3-201ENST00000336798 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
SDC3-201ENST00000336798 KRTAP4-6Q9BYQ5 205 aa2.85□□□□□ -1.95
SDC3-201ENST00000336798 KRTAP4-12Q9BQ66 201 aa2.81□□□□□ -1.96
SDC3-201ENST00000336798 KRTAP4-2Q9BYR5 136 aa2.81□□□□□ -1.96
SDC3-201ENST00000336798 SSPOA2VEC9 5147 aa2.73□□□□□ -1.97
SDC3-201ENST00000336798 MDN1Q9NU22 5596 aa2.71□□□□□ -1.98
SDC3-201ENST00000336798 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
SDC3-201ENST00000336798 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
SDC3-201ENST00000336798 KRTAP5-4Q6L8H1 288 aa2.62□□□□□ -1.99
SDC3-201ENST00000336798 MUC12Q9UKN1 5478 aa2.58□□□□□ -2
SDC3-201ENST00000336798 KRTAP5-3Q6L8H2 238 aa2.37□□□□□ -2.03
SDC3-201ENST00000336798 AHNAK2Q8IVF2 5795 aa2.35□□□□□ -2.03
SDC3-201ENST00000336798 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
SDC3-201ENST00000336798 HMCN1Q96RW7 5635 aa2.21□□□□□ -2.06
SDC3-201ENST00000336798 KRTAP5-8O75690 187 aa2.09□□□□□ -2.07
SDC3-201ENST00000336798 PHGR1C9JFL3 82 aa2.09□□□□□ -2.07
SDC3-201ENST00000336798 KRTAP5-2Q701N4 177 aa1.93□□□□□ -2.1
SDC3-201ENST00000336798 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
SDC3-201ENST00000336798 AHNAKQ09666 5890 aaKnown RBP1.87□□□□□ -2.11
SDC3-201ENST00000336798 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
SDC3-201ENST00000336798 KRTAP5-11Q6L8G4 156 aa1.75□□□□□ -2.13
SDC3-201ENST00000336798 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
SDC3-201ENST00000336798 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
SDC3-201ENST00000336798 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
SDC3-201ENST00000336798 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
SDC3-201ENST00000336798 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.52□□□□□ -2.17
SDC3-201ENST00000336798 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 56.8 ms