RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 SYNE2Q8WXH0 6885 aaKnown RBP2.34□□□□□ -2.04
USF3-201ENST00000316407 MT1AP04731 61 aa2.33□□□□□ -2.04
USF3-201ENST00000316407 KRTAP6-1Q3LI64 71 aa2.32□□□□□ -2.04
USF3-201ENST00000316407 DYNC1H1Q14204 4646 aaKnown RBP2.31□□□□□ -2.04
USF3-201ENST00000316407 KRTAP19-6Q3LI70 58 aa2.3□□□□□ -2.04
USF3-201ENST00000316407 LCE4AQ5TA78 99 aa2.3□□□□□ -2.04
USF3-201ENST00000316407 MUC17Q685J3 4493 aa2.29□□□□□ -2.04
USF3-201ENST00000316407 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
USF3-201ENST00000316407 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
USF3-201ENST00000316407 LCE1FQ5T754 118 aa2.29□□□□□ -2.04
USF3-201ENST00000316407 LCE1AQ5T7P2 110 aa2.29□□□□□ -2.04
USF3-201ENST00000316407 DNHD1Q96M86 4753 aa2.26□□□□□ -2.05
USF3-201ENST00000316407 RYR1P21817 5038 aa2.23□□□□□ -2.05
USF3-201ENST00000316407 KRTAP2-2Q9BYT5 123 aa2.21□□□□□ -2.06
USF3-201ENST00000316407 KRTAP9-4Q9BYQ2 154 aa2.15□□□□□ -2.07
USF3-201ENST00000316407 KRTAP4-11Q9BYQ6 195 aa2.14□□□□□ -2.07
USF3-201ENST00000316407 KMT2CQ8NEZ4 4911 aaKnown RBP2.13□□□□□ -2.07
USF3-201ENST00000316407 RYR3Q15413 4870 aa2.08□□□□□ -2.08
USF3-201ENST00000316407 SYNE1Q8NF91 8797 aaKnown RBP2.04□□□□□ -2.08
USF3-201ENST00000316407 KRTAP9-6A0A140TA67 174 aa2.02□□□□□ -2.09
USF3-201ENST00000316407 KRTAP20-1Q3LI63 56 aa2.02□□□□□ -2.09
USF3-201ENST00000316407 PCLOQ9Y6V0 5065 aa1.97□□□□□ -2.09
USF3-201ENST00000316407 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
USF3-201ENST00000316407 KRTAP6-3Q3LI67 103 aa1.93□□□□□ -2.1
USF3-201ENST00000316407 LCE2AQ5TA79 106 aaPredicted RBP1.93□□□□□ -2.1
USF3-201ENST00000316407 HYDINQ4G0P3 5121 aa1.9□□□□□ -2.1
USF3-201ENST00000316407 KRTAP20-2Q3LI61 65 aa1.89□□□□□ -2.11
USF3-201ENST00000316407 MUC2Q02817 5179 aa1.89□□□□□ -2.11
USF3-201ENST00000316407 HMCN2Q8NDA2 5059 aa1.89□□□□□ -2.11
USF3-201ENST00000316407 FSIP2Q5CZC0 6907 aa1.86□□□□□ -2.11
USF3-201ENST00000316407 KMT2DO14686 5537 aa1.85□□□□□ -2.11
USF3-201ENST00000316407 KRTAP9-9Q9BYP9 154 aa1.85□□□□□ -2.11
USF3-201ENST00000316407 HERC1Q15751 4861 aa1.83□□□□□ -2.12
USF3-201ENST00000316407 KRTAP4-6Q9BYQ5 205 aa1.82□□□□□ -2.12
USF3-201ENST00000316407 KRTAP4-12Q9BQ66 201 aa1.82□□□□□ -2.12
USF3-201ENST00000316407 KRTAP4-2Q9BYR5 136 aa1.82□□□□□ -2.12
USF3-201ENST00000316407 BIRC6Q9NR09 4857 aa1.81□□□□□ -2.12
USF3-201ENST00000316407 KRTAP5-5Q701N2 237 aaPredicted RBP1.81□□□□□ -2.12
USF3-201ENST00000316407 KIAA1109Q2LD37 5005 aa1.8□□□□□ -2.12
USF3-201ENST00000316407 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.8□□□□□ -2.12
USF3-201ENST00000316407 HERC2O95714 4834 aa1.79□□□□□ -2.12
USF3-201ENST00000316407 ABCA13Q86UQ4 5058 aa1.72□□□□□ -2.13
USF3-201ENST00000316407 FCGBPQ9Y6R7 5405 aaPredicted RBP1.67□□□□□ -2.14
USF3-201ENST00000316407 RYR2Q92736 4967 aa1.64□□□□□ -2.15
USF3-201ENST00000316407 UBR4Q5T4S7 5183 aa1.63□□□□□ -2.15
USF3-201ENST00000316407 EPPK1P58107 5090 aaKnown RBP1.59□□□□□ -2.16
USF3-201ENST00000316407 OBSCNQ5VST9 7968 aa1.55□□□□□ -2.16
USF3-201ENST00000316407 DSTQ03001 7570 aaKnown RBP1.54□□□□□ -2.16
USF3-201ENST00000316407 FAT4Q6V0I7 4981 aa1.52□□□□□ -2.17
USF3-201ENST00000316407 KRTAP5-9P26371 169 aa1.49□□□□□ -2.17
USF3-201ENST00000316407 RNF213Q63HN8 5207 aa1.47□□□□□ -2.17
USF3-201ENST00000316407 SSPOA2VEC9 5147 aa1.45□□□□□ -2.18
USF3-201ENST00000316407 KRTAP5-4Q6L8H1 288 aa1.44□□□□□ -2.18
USF3-201ENST00000316407 MUC19Q7Z5P9 8384 aa1.43□□□□□ -2.18
USF3-201ENST00000316407 KRTAP5-2Q701N4 177 aa1.36□□□□□ -2.19
USF3-201ENST00000316407 USH2AO75445 5202 aa1.34□□□□□ -2.19
USF3-201ENST00000316407 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.2
USF3-201ENST00000316407 MUC12Q9UKN1 5478 aa1.29□□□□□ -2.2
USF3-201ENST00000316407 MACF1Q9UPN3 7388 aaKnown RBP1.26□□□□□ -2.21
USF3-201ENST00000316407 KRTAP5-3Q6L8H2 238 aa1.24□□□□□ -2.21
USF3-201ENST00000316407 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
USF3-201ENST00000316407 KRTAP5-1Q6L8H4 278 aa1.18□□□□□ -2.22
USF3-201ENST00000316407 KRTAP5-8O75690 187 aa1.17□□□□□ -2.22
USF3-201ENST00000316407 MDN1Q9NU22 5596 aa1.17□□□□□ -2.22
USF3-201ENST00000316407 NEBP20929 6669 aa1.11□□□□□ -2.23
USF3-201ENST00000316407 KRTAP21-1Q3LI58 79 aa1.1□□□□□ -2.23
USF3-201ENST00000316407 GPR98Q8WXG9 6306 aa1.08□□□□□ -2.24
USF3-201ENST00000316407 KRTAP21-2Q3LI59 83 aa1.07□□□□□ -2.24
USF3-201ENST00000316407 MUC5ACP98088 5654 aa1.04□□□□□ -2.24
USF3-201ENST00000316407 KRTAP5-11Q6L8G4 156 aa1□□□□□ -2.25
USF3-201ENST00000316407 MUC5BQ9HC84 5762 aaPredicted RBP0.97□□□□□ -2.25
USF3-201ENST00000316407 HMCN1Q96RW7 5635 aa0.96□□□□□ -2.26
USF3-201ENST00000316407 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
USF3-201ENST00000316407 AHNAK2Q8IVF2 5795 aa0.91□□□□□ -2.26
USF3-201ENST00000316407 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.87□□□□□ -2.27
USF3-201ENST00000316407 KRTAP5-7Q6L8G8 165 aa0.84□□□□□ -2.27
USF3-201ENST00000316407 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms