RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 KRTAP4-3Q9BYR4 195 aa4.18□□□□□ -1.74
HCFC1-201ENST00000310441 KRTAP20-1Q3LI63 56 aa4.18□□□□□ -1.74
HCFC1-201ENST00000310441 LRP2P98164 4655 aa4.17□□□□□ -1.74
HCFC1-201ENST00000310441 KRTAP19-7Q3SYF9 63 aa4.17□□□□□ -1.74
HCFC1-201ENST00000310441 LPAP08519 4548 aa4.16□□□□□ -1.74
HCFC1-201ENST00000310441 KRTAP6-2Q3LI66 62 aa4.15□□□□□ -1.74
HCFC1-201ENST00000310441 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
HCFC1-201ENST00000310441 LCE1CQ5T751 118 aa4.07□□□□□ -1.76
HCFC1-201ENST00000310441 LCE1EQ5T753 118 aa4.07□□□□□ -1.76
HCFC1-201ENST00000310441 LCE1FQ5T754 118 aa4.07□□□□□ -1.76
HCFC1-201ENST00000310441 KRTAP9-4Q9BYQ2 154 aa4.06□□□□□ -1.76
HCFC1-201ENST00000310441 KRTAP4-9Q9BYQ8 210 aa4.06□□□□□ -1.76
HCFC1-201ENST00000310441 HYDINQ4G0P3 5121 aa4.04□□□□□ -1.76
HCFC1-201ENST00000310441 PCLOQ9Y6V0 5065 aa4.02□□□□□ -1.77
HCFC1-201ENST00000310441 KMT2CQ8NEZ4 4911 aaKnown RBP4.02□□□□□ -1.77
HCFC1-201ENST00000310441 SYNE2Q8WXH0 6885 aaKnown RBP4.01□□□□□ -1.77
HCFC1-201ENST00000310441 KRTAP9-6A0A140TA67 174 aa4□□□□□ -1.77
HCFC1-201ENST00000310441 KRTAP6-1Q3LI64 71 aa3.96□□□□□ -1.78
HCFC1-201ENST00000310441 KRTAP6-3Q3LI67 103 aa3.94□□□□□ -1.78
HCFC1-201ENST00000310441 HERC2O95714 4834 aa3.92□□□□□ -1.78
HCFC1-201ENST00000310441 LCE2AQ5TA79 106 aaPredicted RBP3.86□□□□□ -1.79
HCFC1-201ENST00000310441 RYR2Q92736 4967 aa3.85□□□□□ -1.79
HCFC1-201ENST00000310441 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.79
HCFC1-201ENST00000310441 BIRC6Q9NR09 4857 aa3.84□□□□□ -1.8
HCFC1-201ENST00000310441 KRTAP2-2Q9BYT5 123 aa3.81□□□□□ -1.8
HCFC1-201ENST00000310441 KIAA1109Q2LD37 5005 aa3.79□□□□□ -1.8
HCFC1-201ENST00000310441 KRTAP9-9Q9BYP9 154 aa3.77□□□□□ -1.81
HCFC1-201ENST00000310441 KRTAP9-6A8MVA2 160 aa3.75□□□□□ -1.81
HCFC1-201ENST00000310441 HERC1Q15751 4861 aa3.7□□□□□ -1.82
HCFC1-201ENST00000310441 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.62□□□□□ -1.83
HCFC1-201ENST00000310441 SYNE1Q8NF91 8797 aaKnown RBP3.52□□□□□ -1.85
HCFC1-201ENST00000310441 HMCN2Q8NDA2 5059 aa3.49□□□□□ -1.85
HCFC1-201ENST00000310441 EPPK1P58107 5090 aaKnown RBP3.4□□□□□ -1.87
HCFC1-201ENST00000310441 KRTAP4-11Q9BYQ6 195 aa3.39□□□□□ -1.87
HCFC1-201ENST00000310441 FSIP2Q5CZC0 6907 aa3.38□□□□□ -1.87
HCFC1-201ENST00000310441 RNF213Q63HN8 5207 aa3.25□□□□□ -1.89
HCFC1-201ENST00000310441 MUC2Q02817 5179 aa3.23□□□□□ -1.89
HCFC1-201ENST00000310441 KRTAP5-9P26371 169 aa3.22□□□□□ -1.89
HCFC1-201ENST00000310441 FAT4Q6V0I7 4981 aa3.21□□□□□ -1.9
HCFC1-201ENST00000310441 KRTAP20-2Q3LI61 65 aa3.19□□□□□ -1.9
HCFC1-201ENST00000310441 ABCA13Q86UQ4 5058 aa3.18□□□□□ -1.9
HCFC1-201ENST00000310441 UBR4Q5T4S7 5183 aa3.15□□□□□ -1.91
HCFC1-201ENST00000310441 KRTAP4-6Q9BYQ5 205 aa3.08□□□□□ -1.92
HCFC1-201ENST00000310441 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
HCFC1-201ENST00000310441 NEBP20929 6669 aa2.98□□□□□ -1.93
HCFC1-201ENST00000310441 KMT2DO14686 5537 aa2.98□□□□□ -1.93
HCFC1-201ENST00000310441 OBSCNQ5VST9 7968 aa2.97□□□□□ -1.93
HCFC1-201ENST00000310441 KRTAP4-4Q9BYR3 166 aa2.96□□□□□ -1.93
HCFC1-201ENST00000310441 KRTAP5-5Q701N2 237 aaPredicted RBP2.85□□□□□ -1.95
HCFC1-201ENST00000310441 KRTAP4-12Q9BQ66 201 aa2.84□□□□□ -1.95
HCFC1-201ENST00000310441 KRTAP4-2Q9BYR5 136 aa2.84□□□□□ -1.95
HCFC1-201ENST00000310441 DSTQ03001 7570 aaKnown RBP2.76□□□□□ -1.97
HCFC1-201ENST00000310441 MDN1Q9NU22 5596 aa2.74□□□□□ -1.97
HCFC1-201ENST00000310441 FCGBPQ9Y6R7 5405 aaPredicted RBP2.73□□□□□ -1.97
HCFC1-201ENST00000310441 MACF1Q9UPN3 7388 aaKnown RBP2.68□□□□□ -1.98
HCFC1-201ENST00000310441 KRTAP5-3Q6L8H2 238 aa2.64□□□□□ -1.99
HCFC1-201ENST00000310441 USH2AO75445 5202 aa2.62□□□□□ -1.99
HCFC1-201ENST00000310441 MUC5ACP98088 5654 aa2.57□□□□□ -2
HCFC1-201ENST00000310441 SSPOA2VEC9 5147 aa2.52□□□□□ -2.01
HCFC1-201ENST00000310441 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
HCFC1-201ENST00000310441 MUC12Q9UKN1 5478 aa2.5□□□□□ -2.01
HCFC1-201ENST00000310441 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
HCFC1-201ENST00000310441 KRTAP5-10Q6L8G5 202 aa2.37□□□□□ -2.03
HCFC1-201ENST00000310441 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
HCFC1-201ENST00000310441 MUC5BQ9HC84 5762 aaPredicted RBP2.3□□□□□ -2.04
HCFC1-201ENST00000310441 HMCN1Q96RW7 5635 aa2.22□□□□□ -2.05
HCFC1-201ENST00000310441 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
HCFC1-201ENST00000310441 AHNAK2Q8IVF2 5795 aa2.16□□□□□ -2.06
HCFC1-201ENST00000310441 KRTAP5-11Q6L8G4 156 aa2.16□□□□□ -2.06
HCFC1-201ENST00000310441 KRTAP5-2Q701N4 177 aa2.15□□□□□ -2.06
HCFC1-201ENST00000310441 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
HCFC1-201ENST00000310441 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
HCFC1-201ENST00000310441 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
HCFC1-201ENST00000310441 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.1
HCFC1-201ENST00000310441 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.86□□□□□ -2.11
HCFC1-201ENST00000310441 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
HCFC1-201ENST00000310441 KRTAP5-7Q6L8G8 165 aa1.45□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 6.5 ms