RNA–Protein interactions for RNA: ENST00000269228.9

NPC1-201, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPC1, Length 5,157 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-201ENST00000269228 MT1EP04732 61 aa4.58□□□□□ -1.68
NPC1-201ENST00000269228 MT1LQ93083 61 aa4.58□□□□□ -1.68
NPC1-201ENST00000269228 LCE2DQ5TA82 110 aaPredicted RBP4.54□□□□□ -1.68
NPC1-201ENST00000269228 MUC2Q02817 5179 aa4.46□□□□□ -1.7
NPC1-201ENST00000269228 MT1MQ8N339 61 aa4.43□□□□□ -1.7
NPC1-201ENST00000269228 SYNE1Q8NF91 8797 aaKnown RBP4.42□□□□□ -1.7
NPC1-201ENST00000269228 KRTAP9-6A0A140TA67 174 aa4.41□□□□□ -1.7
NPC1-201ENST00000269228 KRTAP4-3Q9BYR4 195 aa4.35□□□□□ -1.71
NPC1-201ENST00000269228 LCE3DQ9BYE3 92 aa4.34□□□□□ -1.71
NPC1-201ENST00000269228 KRTAP19-7Q3SYF9 63 aa4.32□□□□□ -1.72
NPC1-201ENST00000269228 LOC100996750A0A140TA64 210 aa4.31□□□□□ -1.72
NPC1-201ENST00000269228 MT4P47944 62 aa4.28□□□□□ -1.72
NPC1-201ENST00000269228 LCE3EQ5T5B0 92 aa4.25□□□□□ -1.73
NPC1-201ENST00000269228 SYNE2Q8WXH0 6885 aaKnown RBP4.2□□□□□ -1.74
NPC1-201ENST00000269228 MT3P25713 68 aa4.17□□□□□ -1.74
NPC1-201ENST00000269228 KRTAP9-7A8MTY7 169 aa4.16□□□□□ -1.74
NPC1-201ENST00000269228 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.75
NPC1-201ENST00000269228 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.08□□□□□ -1.76
NPC1-201ENST00000269228 USH2AO75445 5202 aa4.07□□□□□ -1.76
NPC1-201ENST00000269228 MT1AP04731 61 aa4.05□□□□□ -1.76
NPC1-201ENST00000269228 LCE1AQ5T7P2 110 aa4.03□□□□□ -1.76
NPC1-201ENST00000269228 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.76
NPC1-201ENST00000269228 OBSCNQ5VST9 7968 aa3.98□□□□□ -1.77
NPC1-201ENST00000269228 PRM1P04553 51 aa3.97□□□□□ -1.77
NPC1-201ENST00000269228 LCE5AQ5TCM9 118 aa3.97□□□□□ -1.77
NPC1-201ENST00000269228 LCE1DQ5T752 114 aa3.96□□□□□ -1.78
NPC1-201ENST00000269228 LCE1BQ5T7P3 118 aa3.94□□□□□ -1.78
NPC1-201ENST00000269228 KRTAP2-3P0C7H8 128 aa3.94□□□□□ -1.78
NPC1-201ENST00000269228 KRTAP2-4Q9BYR9 128 aa3.94□□□□□ -1.78
NPC1-201ENST00000269228 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
NPC1-201ENST00000269228 KRTAP4-9Q9BYQ8 210 aa3.92□□□□□ -1.78
NPC1-201ENST00000269228 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
NPC1-201ENST00000269228 FCGBPQ9Y6R7 5405 aaPredicted RBP3.9□□□□□ -1.79
NPC1-201ENST00000269228 KRTAP6-1Q3LI64 71 aa3.86□□□□□ -1.79
NPC1-201ENST00000269228 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
NPC1-201ENST00000269228 KMT2DO14686 5537 aa3.82□□□□□ -1.8
NPC1-201ENST00000269228 MACF1Q9UPN3 7388 aaKnown RBP3.81□□□□□ -1.8
NPC1-201ENST00000269228 KRTAP2-2Q9BYT5 123 aa3.81□□□□□ -1.8
NPC1-201ENST00000269228 KRTAP6-2Q3LI66 62 aa3.79□□□□□ -1.8
NPC1-201ENST00000269228 LCE4AQ5TA78 99 aa3.77□□□□□ -1.81
NPC1-201ENST00000269228 KRTAP9-4Q9BYQ2 154 aa3.75□□□□□ -1.81
NPC1-201ENST00000269228 SSPOA2VEC9 5147 aa3.73□□□□□ -1.81
NPC1-201ENST00000269228 MUC12Q9UKN1 5478 aa3.64□□□□□ -1.83
NPC1-201ENST00000269228 KRTAP5-9P26371 169 aa3.61□□□□□ -1.83
NPC1-201ENST00000269228 NEBP20929 6669 aa3.59□□□□□ -1.83
NPC1-201ENST00000269228 MDN1Q9NU22 5596 aa3.48□□□□□ -1.85
NPC1-201ENST00000269228 KRTAP4-6Q9BYQ5 205 aa3.37□□□□□ -1.87
NPC1-201ENST00000269228 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
NPC1-201ENST00000269228 LCE1CQ5T751 118 aa3.28□□□□□ -1.88
NPC1-201ENST00000269228 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
NPC1-201ENST00000269228 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
NPC1-201ENST00000269228 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
NPC1-201ENST00000269228 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.91
NPC1-201ENST00000269228 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
NPC1-201ENST00000269228 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
NPC1-201ENST00000269228 KRTAP5-5Q701N2 237 aaPredicted RBP3□□□□□ -1.93
NPC1-201ENST00000269228 KRTAP4-11Q9BYQ6 195 aa2.96□□□□□ -1.94
NPC1-201ENST00000269228 KRTAP4-12Q9BQ66 201 aa2.85□□□□□ -1.95
NPC1-201ENST00000269228 KRTAP4-2Q9BYR5 136 aa2.85□□□□□ -1.95
NPC1-201ENST00000269228 MUC5ACP98088 5654 aa2.84□□□□□ -1.96
NPC1-201ENST00000269228 KRTAP4-4Q9BYR3 166 aa2.82□□□□□ -1.96
NPC1-201ENST00000269228 KRTAP5-3Q6L8H2 238 aa2.76□□□□□ -1.97
NPC1-201ENST00000269228 HMCN1Q96RW7 5635 aa2.71□□□□□ -1.98
NPC1-201ENST00000269228 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
NPC1-201ENST00000269228 KRTAP5-8O75690 187 aa2.53□□□□□ -2
NPC1-201ENST00000269228 KRTAP5-2Q701N4 177 aa2.5□□□□□ -2.01
NPC1-201ENST00000269228 KRTAP5-10Q6L8G5 202 aa2.3□□□□□ -2.04
NPC1-201ENST00000269228 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.05
NPC1-201ENST00000269228 MUC5BQ9HC84 5762 aaPredicted RBP2.26□□□□□ -2.05
NPC1-201ENST00000269228 KRTAP5-1Q6L8H4 278 aa2.22□□□□□ -2.05
NPC1-201ENST00000269228 KRTAP5-11Q6L8G4 156 aa2.15□□□□□ -2.07
NPC1-201ENST00000269228 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
NPC1-201ENST00000269228 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
NPC1-201ENST00000269228 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.93□□□□□ -2.1
NPC1-201ENST00000269228 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
NPC1-201ENST00000269228 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
NPC1-201ENST00000269228 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 661.7 ms