RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 LCE2AQ5TA79 106 aaPredicted RBP4.52□□□□□ -1.69
CDH3-201ENST00000264012 HMCN2Q8NDA2 5059 aa4.5□□□□□ -1.69
CDH3-201ENST00000264012 LCE3DQ9BYE3 92 aa4.5□□□□□ -1.69
CDH3-201ENST00000264012 LCE2DQ5TA82 110 aaPredicted RBP4.47□□□□□ -1.69
CDH3-201ENST00000264012 MT1MQ8N339 61 aa4.46□□□□□ -1.69
CDH3-201ENST00000264012 KRTAP9-2Q9BYQ4 174 aa4.45□□□□□ -1.7
CDH3-201ENST00000264012 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
CDH3-201ENST00000264012 KRTAP19-7Q3SYF9 63 aa4.37□□□□□ -1.71
CDH3-201ENST00000264012 KRTAP4-3Q9BYR4 195 aa4.36□□□□□ -1.71
CDH3-201ENST00000264012 LOC100996750A0A140TA64 210 aa4.34□□□□□ -1.71
CDH3-201ENST00000264012 MUC2Q02817 5179 aa4.34□□□□□ -1.71
CDH3-201ENST00000264012 KRTAP9-6A0A140TA67 174 aa4.29□□□□□ -1.72
CDH3-201ENST00000264012 MT4P47944 62 aa4.27□□□□□ -1.73
CDH3-201ENST00000264012 MT3P25713 68 aa4.24□□□□□ -1.73
CDH3-201ENST00000264012 KRTAP2-3P0C7H8 128 aa4.2□□□□□ -1.74
CDH3-201ENST00000264012 KRTAP2-4Q9BYR9 128 aa4.2□□□□□ -1.74
CDH3-201ENST00000264012 KRTAP2-1Q9BYU5 128 aa4.2□□□□□ -1.74
CDH3-201ENST00000264012 MT1AP04731 61 aa4.12□□□□□ -1.75
CDH3-201ENST00000264012 KRTAP20-1Q3LI63 56 aa4.08□□□□□ -1.76
CDH3-201ENST00000264012 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
CDH3-201ENST00000264012 KRTAP9-7A8MTY7 169 aa4.06□□□□□ -1.76
CDH3-201ENST00000264012 LCE1DQ5T752 114 aa4.04□□□□□ -1.76
CDH3-201ENST00000264012 SYNE2Q8WXH0 6885 aaKnown RBP4.04□□□□□ -1.76
CDH3-201ENST00000264012 PRM1P04553 51 aa4.04□□□□□ -1.76
CDH3-201ENST00000264012 OBSCNQ5VST9 7968 aa4.02□□□□□ -1.77
CDH3-201ENST00000264012 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
CDH3-201ENST00000264012 KRTAP4-9Q9BYQ8 210 aa4□□□□□ -1.77
CDH3-201ENST00000264012 LCE1AQ5T7P2 110 aa3.99□□□□□ -1.77
CDH3-201ENST00000264012 LCE5AQ5TCM9 118 aa3.96□□□□□ -1.77
CDH3-201ENST00000264012 KRTAP6-3Q3LI67 103 aa3.95□□□□□ -1.78
CDH3-201ENST00000264012 USH2AO75445 5202 aa3.94□□□□□ -1.78
CDH3-201ENST00000264012 FCGBPQ9Y6R7 5405 aaPredicted RBP3.91□□□□□ -1.78
CDH3-201ENST00000264012 KRTAP6-1Q3LI64 71 aa3.9□□□□□ -1.78
CDH3-201ENST00000264012 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.85□□□□□ -1.79
CDH3-201ENST00000264012 KRTAP6-2Q3LI66 62 aa3.81□□□□□ -1.8
CDH3-201ENST00000264012 KRTAP9-4Q9BYQ2 154 aa3.79□□□□□ -1.8
CDH3-201ENST00000264012 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
CDH3-201ENST00000264012 DSTQ03001 7570 aaKnown RBP3.78□□□□□ -1.8
CDH3-201ENST00000264012 LCE4AQ5TA78 99 aa3.76□□□□□ -1.81
CDH3-201ENST00000264012 KMT2DO14686 5537 aa3.75□□□□□ -1.81
CDH3-201ENST00000264012 MACF1Q9UPN3 7388 aaKnown RBP3.7□□□□□ -1.82
CDH3-201ENST00000264012 SSPOA2VEC9 5147 aa3.57□□□□□ -1.84
CDH3-201ENST00000264012 MUC12Q9UKN1 5478 aa3.57□□□□□ -1.84
CDH3-201ENST00000264012 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
CDH3-201ENST00000264012 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
CDH3-201ENST00000264012 LCE1FQ5T754 118 aa3.53□□□□□ -1.84
CDH3-201ENST00000264012 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
CDH3-201ENST00000264012 MUC19Q7Z5P9 8384 aa3.52□□□□□ -1.85
CDH3-201ENST00000264012 KRTAP5-9P26371 169 aa3.51□□□□□ -1.85
CDH3-201ENST00000264012 NEBP20929 6669 aa3.42□□□□□ -1.86
CDH3-201ENST00000264012 MDN1Q9NU22 5596 aa3.41□□□□□ -1.86
CDH3-201ENST00000264012 KRTAP9-9Q9BYP9 154 aa3.36□□□□□ -1.87
CDH3-201ENST00000264012 KRTAP4-6Q9BYQ5 205 aa3.29□□□□□ -1.88
CDH3-201ENST00000264012 KRTAP20-2Q3LI61 65 aa3.22□□□□□ -1.89
CDH3-201ENST00000264012 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
CDH3-201ENST00000264012 KRTAP4-11Q9BYQ6 195 aa3□□□□□ -1.93
CDH3-201ENST00000264012 KRTAP5-4Q6L8H1 288 aa2.98□□□□□ -1.93
CDH3-201ENST00000264012 KRTAP4-4Q9BYR3 166 aa2.81□□□□□ -1.96
CDH3-201ENST00000264012 MUC5ACP98088 5654 aa2.81□□□□□ -1.96
CDH3-201ENST00000264012 KRTAP4-12Q9BQ66 201 aa2.79□□□□□ -1.96
CDH3-201ENST00000264012 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
CDH3-201ENST00000264012 AHNAK2Q8IVF2 5795 aa2.72□□□□□ -1.97
CDH3-201ENST00000264012 HMCN1Q96RW7 5635 aa2.71□□□□□ -1.97
CDH3-201ENST00000264012 KRTAP5-3Q6L8H2 238 aa2.63□□□□□ -1.99
CDH3-201ENST00000264012 KRTAP5-2Q701N4 177 aa2.47□□□□□ -2.01
CDH3-201ENST00000264012 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
CDH3-201ENST00000264012 KRTAP5-10Q6L8G5 202 aa2.38□□□□□ -2.03
CDH3-201ENST00000264012 MUC5BQ9HC84 5762 aaPredicted RBP2.23□□□□□ -2.05
CDH3-201ENST00000264012 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
CDH3-201ENST00000264012 AHNAKQ09666 5890 aaKnown RBP2.21□□□□□ -2.06
CDH3-201ENST00000264012 KRTAP5-1Q6L8H4 278 aa2.17□□□□□ -2.06
CDH3-201ENST00000264012 KRTAP5-11Q6L8G4 156 aa2.15□□□□□ -2.06
CDH3-201ENST00000264012 KRTAP21-2Q3LI59 83 aa2.08□□□□□ -2.08
CDH3-201ENST00000264012 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
CDH3-201ENST00000264012 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.96□□□□□ -2.1
CDH3-201ENST00000264012 KRTAP5-7Q6L8G8 165 aa1.9□□□□□ -2.1
CDH3-201ENST00000264012 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 52.1 ms