RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 LCE1AQ5T7P2 110 aa1.42□□□□□ -2.18
VPS13C-202ENST00000261517 LCE3DQ9BYE3 92 aa1.42□□□□□ -2.18
VPS13C-202ENST00000261517 MT1MQ8N339 61 aa1.42□□□□□ -2.18
VPS13C-202ENST00000261517 LCE3EQ5T5B0 92 aa1.42□□□□□ -2.18
VPS13C-202ENST00000261517 MT3P25713 68 aa1.4□□□□□ -2.18
VPS13C-202ENST00000261517 DSTQ03001 7570 aaKnown RBP1.4□□□□□ -2.19
VPS13C-202ENST00000261517 LCE3BQ5TA77 95 aa1.36□□□□□ -2.19
VPS13C-202ENST00000261517 MT1AP04731 61 aa1.35□□□□□ -2.19
VPS13C-202ENST00000261517 USH2AO75445 5202 aa1.34□□□□□ -2.19
VPS13C-202ENST00000261517 KRTAP9-2Q9BYQ4 174 aa1.34□□□□□ -2.2
VPS13C-202ENST00000261517 LCE4AQ5TA78 99 aa1.33□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP6-3Q3LI67 103 aa1.33□□□□□ -2.2
VPS13C-202ENST00000261517 OBSCNQ5VST9 7968 aa1.32□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP2-3P0C7H8 128 aa1.31□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP2-4Q9BYR9 128 aa1.31□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP2-1Q9BYU5 128 aa1.31□□□□□ -2.2
VPS13C-202ENST00000261517 FCGBPQ9Y6R7 5405 aaPredicted RBP1.31□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP4-8A0A0G2JLE6 195 aa1.3□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP4-8Q9BYQ9 185 aa1.3□□□□□ -2.2
VPS13C-202ENST00000261517 KMT2DO14686 5537 aa1.29□□□□□ -2.2
VPS13C-202ENST00000261517 MACF1Q9UPN3 7388 aaKnown RBP1.29□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP19-7Q3SYF9 63 aa1.28□□□□□ -2.2
VPS13C-202ENST00000261517 KRTAP9-6A0A140TA67 174 aa1.28□□□□□ -2.21
VPS13C-202ENST00000261517 MDN1Q9NU22 5596 aa1.27□□□□□ -2.21
VPS13C-202ENST00000261517 MUC12Q9UKN1 5478 aa1.26□□□□□ -2.21
VPS13C-202ENST00000261517 KRTAP20-1Q3LI63 56 aa1.26□□□□□ -2.21
VPS13C-202ENST00000261517 SYNE2Q8WXH0 6885 aaKnown RBP1.26□□□□□ -2.21
VPS13C-202ENST00000261517 LCE5AQ5TCM9 118 aa1.25□□□□□ -2.21
VPS13C-202ENST00000261517 KRTAP5-9P26371 169 aa1.22□□□□□ -2.21
VPS13C-202ENST00000261517 SSPOA2VEC9 5147 aa1.22□□□□□ -2.21
VPS13C-202ENST00000261517 KRTAP2-2Q9BYT5 123 aa1.22□□□□□ -2.21
VPS13C-202ENST00000261517 KRTAP9-4Q9BYQ2 154 aa1.21□□□□□ -2.22
VPS13C-202ENST00000261517 KRTAP9-7A8MTY7 169 aa1.19□□□□□ -2.22
VPS13C-202ENST00000261517 PRM1P04553 51 aa1.18□□□□□ -2.22
VPS13C-202ENST00000261517 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.18□□□□□ -2.22
VPS13C-202ENST00000261517 MT4P47944 62 aa1.17□□□□□ -2.22
VPS13C-202ENST00000261517 KRTAP4-7Q9BYR0 210 aa1.16□□□□□ -2.22
VPS13C-202ENST00000261517 LCE1DQ5T752 114 aa1.15□□□□□ -2.23
VPS13C-202ENST00000261517 NEBP20929 6669 aa1.12□□□□□ -2.23
VPS13C-202ENST00000261517 KRTAP6-1Q3LI64 71 aa1.12□□□□□ -2.23
VPS13C-202ENST00000261517 LCE1BQ5T7P3 118 aa1.11□□□□□ -2.23
VPS13C-202ENST00000261517 KRTAP6-2Q3LI66 62 aa1.1□□□□□ -2.23
VPS13C-202ENST00000261517 LOC100996750A0A140TA64 210 aa1.1□□□□□ -2.23
VPS13C-202ENST00000261517 KRTAP4-3Q9BYR4 195 aa1.09□□□□□ -2.23
VPS13C-202ENST00000261517 KRTAP9-6A8MVA2 160 aa1.09□□□□□ -2.24
VPS13C-202ENST00000261517 KRTAP9-9Q9BYP9 154 aa1.07□□□□□ -2.24
VPS13C-202ENST00000261517 KRTAP5-4Q6L8H1 288 aa1.04□□□□□ -2.24
VPS13C-202ENST00000261517 LCE1EQ5T753 118 aa1.04□□□□□ -2.24
VPS13C-202ENST00000261517 GPR98Q8WXG9 6306 aa1.03□□□□□ -2.24
VPS13C-202ENST00000261517 KRTAP5-5Q701N2 237 aaPredicted RBP1□□□□□ -2.25
VPS13C-202ENST00000261517 KRTAP20-2Q3LI61 65 aa1□□□□□ -2.25
VPS13C-202ENST00000261517 KRTAP4-9Q9BYQ8 210 aa0.99□□□□□ -2.25
VPS13C-202ENST00000261517 HMCN1Q96RW7 5635 aa0.97□□□□□ -2.25
VPS13C-202ENST00000261517 LCE1CQ5T751 118 aa0.97□□□□□ -2.25
VPS13C-202ENST00000261517 LCE1FQ5T754 118 aa0.97□□□□□ -2.25
VPS13C-202ENST00000261517 AHNAK2Q8IVF2 5795 aa0.95□□□□□ -2.26
VPS13C-202ENST00000261517 MUC19Q7Z5P9 8384 aa0.94□□□□□ -2.26
VPS13C-202ENST00000261517 MUC5ACP98088 5654 aa0.94□□□□□ -2.26
VPS13C-202ENST00000261517 KRTAP4-6Q9BYQ5 205 aa0.91□□□□□ -2.26
VPS13C-202ENST00000261517 KRTAP4-11Q9BYQ6 195 aa0.9□□□□□ -2.26
VPS13C-202ENST00000261517 KRTAP5-3Q6L8H2 238 aa0.9□□□□□ -2.27
VPS13C-202ENST00000261517 KRTAP5-2Q701N4 177 aa0.88□□□□□ -2.27
VPS13C-202ENST00000261517 KRTAP5-8O75690 187 aa0.8□□□□□ -2.28
VPS13C-202ENST00000261517 MUC5BQ9HC84 5762 aaPredicted RBP0.8□□□□□ -2.28
VPS13C-202ENST00000261517 AHNAKQ09666 5890 aaKnown RBP0.79□□□□□ -2.28
VPS13C-202ENST00000261517 KRTAP5-11Q6L8G4 156 aa0.77□□□□□ -2.29
VPS13C-202ENST00000261517 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.75□□□□□ -2.29
VPS13C-202ENST00000261517 KRTAP5-7Q6L8G8 165 aa0.74□□□□□ -2.29
VPS13C-202ENST00000261517 KRTAP5-10Q6L8G5 202 aa0.74□□□□□ -2.29
VPS13C-202ENST00000261517 KRTAP5-1Q6L8H4 278 aa0.74□□□□□ -2.29
VPS13C-202ENST00000261517 KRTAP4-2Q9BYR5 136 aa0.73□□□□□ -2.29
VPS13C-202ENST00000261517 KRTAP4-12Q9BQ66 201 aa0.69□□□□□ -2.3
VPS13C-202ENST00000261517 KRTAP4-4Q9BYR3 166 aa0.68□□□□□ -2.3
VPS13C-202ENST00000261517 KRTAP21-2Q3LI59 83 aa0.65□□□□□ -2.3
VPS13C-202ENST00000261517 PHGR1C9JFL3 82 aa0.61□□□□□ -2.31
VPS13C-202ENST00000261517 KRTAP21-1Q3LI58 79 aa0.59□□□□□ -2.32
VPS13C-202ENST00000261517 MUC16Q8WXI7 14507 aa0.5□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 62.1 ms