RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KRTAP6-3Q3LI67 103 aa3.9□□□□□ -1.79
USP40-201ENST00000251722 TNXBP22105 4242 aa3.89□□□□□ -1.79
USP40-201ENST00000251722 KRTAP2-3P0C7H8 128 aa3.88□□□□□ -1.79
USP40-201ENST00000251722 KRTAP20-1Q3LI63 56 aa3.88□□□□□ -1.79
USP40-201ENST00000251722 KRTAP2-4Q9BYR9 128 aa3.88□□□□□ -1.79
USP40-201ENST00000251722 KRTAP2-1Q9BYU5 128 aa3.88□□□□□ -1.79
USP40-201ENST00000251722 MT4P47944 62 aa3.86□□□□□ -1.79
USP40-201ENST00000251722 MT1AP04731 61 aa3.86□□□□□ -1.79
USP40-201ENST00000251722 EPPK1P58107 5090 aaKnown RBP3.84□□□□□ -1.8
USP40-201ENST00000251722 LPAP08519 4548 aa3.82□□□□□ -1.8
USP40-201ENST00000251722 KRTAP4-7Q9BYR0 210 aa3.81□□□□□ -1.8
USP40-201ENST00000251722 ABCA13Q86UQ4 5058 aa3.8□□□□□ -1.8
USP40-201ENST00000251722 KRTAP9-7A8MTY7 169 aa3.77□□□□□ -1.81
USP40-201ENST00000251722 KRTAP19-7Q3SYF9 63 aa3.77□□□□□ -1.81
USP40-201ENST00000251722 LCE4AQ5TA78 99 aa3.75□□□□□ -1.81
USP40-201ENST00000251722 RNF213Q63HN8 5207 aa3.68□□□□□ -1.82
USP40-201ENST00000251722 LCE1DQ5T752 114 aa3.66□□□□□ -1.82
USP40-201ENST00000251722 LCE1BQ5T7P3 118 aa3.64□□□□□ -1.83
USP40-201ENST00000251722 KRTAP2-2Q9BYT5 123 aa3.64□□□□□ -1.83
USP40-201ENST00000251722 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.63□□□□□ -1.83
USP40-201ENST00000251722 LOC100996750A0A140TA64 210 aa3.62□□□□□ -1.83
USP40-201ENST00000251722 FAT4Q6V0I7 4981 aa3.61□□□□□ -1.83
USP40-201ENST00000251722 KRTAP4-3Q9BYR4 195 aa3.61□□□□□ -1.83
USP40-201ENST00000251722 LCE5AQ5TCM9 118 aa3.57□□□□□ -1.84
USP40-201ENST00000251722 KRTAP9-4Q9BYQ2 154 aa3.54□□□□□ -1.84
USP40-201ENST00000251722 HMCN2Q8NDA2 5059 aa3.5□□□□□ -1.85
USP40-201ENST00000251722 UBR4Q5T4S7 5183 aa3.44□□□□□ -1.86
USP40-201ENST00000251722 KRTAP6-2Q3LI66 62 aa3.4□□□□□ -1.86
USP40-201ENST00000251722 KRTAP6-1Q3LI64 71 aa3.4□□□□□ -1.87
USP40-201ENST00000251722 SYNE2Q8WXH0 6885 aaKnown RBP3.36□□□□□ -1.87
USP40-201ENST00000251722 FSIP2Q5CZC0 6907 aa3.33□□□□□ -1.88
USP40-201ENST00000251722 KRTAP9-6A8MVA2 160 aa3.31□□□□□ -1.88
USP40-201ENST00000251722 KRTAP4-9Q9BYQ8 210 aa3.29□□□□□ -1.88
USP40-201ENST00000251722 SYNE1Q8NF91 8797 aaKnown RBP3.29□□□□□ -1.88
USP40-201ENST00000251722 KRTAP5-9P26371 169 aa3.27□□□□□ -1.89
USP40-201ENST00000251722 MUC2Q02817 5179 aa3.24□□□□□ -1.89
USP40-201ENST00000251722 KRTAP9-9Q9BYP9 154 aa3.18□□□□□ -1.9
USP40-201ENST00000251722 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
USP40-201ENST00000251722 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
USP40-201ENST00000251722 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
USP40-201ENST00000251722 NEBP20929 6669 aa3.05□□□□□ -1.92
USP40-201ENST00000251722 OBSCNQ5VST9 7968 aa3.03□□□□□ -1.92
USP40-201ENST00000251722 SSPOA2VEC9 5147 aa2.99□□□□□ -1.93
USP40-201ENST00000251722 KRTAP20-2Q3LI61 65 aa2.97□□□□□ -1.93
USP40-201ENST00000251722 USH2AO75445 5202 aa2.93□□□□□ -1.94
USP40-201ENST00000251722 KRTAP5-4Q6L8H1 288 aa2.92□□□□□ -1.94
USP40-201ENST00000251722 KRTAP4-11Q9BYQ6 195 aa2.83□□□□□ -1.96
USP40-201ENST00000251722 KRTAP4-6Q9BYQ5 205 aa2.82□□□□□ -1.96
USP40-201ENST00000251722 FCGBPQ9Y6R7 5405 aaPredicted RBP2.77□□□□□ -1.97
USP40-201ENST00000251722 KMT2DO14686 5537 aa2.77□□□□□ -1.97
USP40-201ENST00000251722 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
USP40-201ENST00000251722 MACF1Q9UPN3 7388 aaKnown RBP2.71□□□□□ -1.98
USP40-201ENST00000251722 DSTQ03001 7570 aaKnown RBP2.67□□□□□ -1.98
USP40-201ENST00000251722 MDN1Q9NU22 5596 aa2.61□□□□□ -1.99
USP40-201ENST00000251722 GPR98Q8WXG9 6306 aa2.6□□□□□ -1.99
USP40-201ENST00000251722 MUC12Q9UKN1 5478 aa2.58□□□□□ -2
USP40-201ENST00000251722 KRTAP5-3Q6L8H2 238 aa2.53□□□□□ -2
USP40-201ENST00000251722 KRTAP4-12Q9BQ66 201 aa2.4□□□□□ -2.02
USP40-201ENST00000251722 KRTAP4-2Q9BYR5 136 aa2.4□□□□□ -2.02
USP40-201ENST00000251722 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
USP40-201ENST00000251722 AHNAK2Q8IVF2 5795 aa2.36□□□□□ -2.03
USP40-201ENST00000251722 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
USP40-201ENST00000251722 MUC5ACP98088 5654 aa2.32□□□□□ -2.04
USP40-201ENST00000251722 HMCN1Q96RW7 5635 aa2.25□□□□□ -2.05
USP40-201ENST00000251722 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
USP40-201ENST00000251722 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
USP40-201ENST00000251722 KRTAP5-11Q6L8G4 156 aa2.04□□□□□ -2.08
USP40-201ENST00000251722 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
USP40-201ENST00000251722 PHGR1C9JFL3 82 aa2□□□□□ -2.09
USP40-201ENST00000251722 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
USP40-201ENST00000251722 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
USP40-201ENST00000251722 AHNAKQ09666 5890 aaKnown RBP1.91□□□□□ -2.1
USP40-201ENST00000251722 KRTAP5-1Q6L8H4 278 aa1.87□□□□□ -2.11
USP40-201ENST00000251722 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
USP40-201ENST00000251722 KRTAP5-7Q6L8G8 165 aa1.82□□□□□ -2.12
USP40-201ENST00000251722 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
USP40-201ENST00000251722 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 7.3 ms