RNA–Protein interactions for RNA: ENST00000237380.11

MED28-201, Transcript of mediator complex subunit 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MED28, Length 10,868 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-201ENST00000237380 LCE1DQ5T752 114 aa2.26□□□□□ -2.05
MED28-201ENST00000237380 LCE1BQ5T7P3 118 aa2.26□□□□□ -2.05
MED28-201ENST00000237380 ABCA13Q86UQ4 5058 aa2.26□□□□□ -2.05
MED28-201ENST00000237380 KRTAP6-3Q3LI67 103 aa2.25□□□□□ -2.05
MED28-201ENST00000237380 MUC17Q685J3 4493 aa2.24□□□□□ -2.05
MED28-201ENST00000237380 KRTAP9-7A8MTY7 169 aa2.23□□□□□ -2.05
MED28-201ENST00000237380 LCE5AQ5TCM9 118 aa2.22□□□□□ -2.05
MED28-201ENST00000237380 KMT2CQ8NEZ4 4911 aaKnown RBP2.22□□□□□ -2.05
MED28-201ENST00000237380 KRTAP2-1Q9BYU5 128 aa2.2□□□□□ -2.06
MED28-201ENST00000237380 MT1AP04731 61 aa2.18□□□□□ -2.06
MED28-201ENST00000237380 KRTAP2-2Q9BYT5 123 aa2.18□□□□□ -2.06
MED28-201ENST00000237380 UBR4Q5T4S7 5183 aa2.18□□□□□ -2.06
MED28-201ENST00000237380 EPPK1P58107 5090 aaKnown RBP2.18□□□□□ -2.06
MED28-201ENST00000237380 RNF213Q63HN8 5207 aa2.17□□□□□ -2.06
MED28-201ENST00000237380 PRM1P04553 51 aa2.16□□□□□ -2.06
MED28-201ENST00000237380 HERC2O95714 4834 aa2.16□□□□□ -2.06
MED28-201ENST00000237380 LRP2P98164 4655 aa2.13□□□□□ -2.07
MED28-201ENST00000237380 HMCN2Q8NDA2 5059 aa2.09□□□□□ -2.07
MED28-201ENST00000237380 KRTAP19-7Q3SYF9 63 aa2.08□□□□□ -2.08
MED28-201ENST00000237380 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
MED28-201ENST00000237380 LCE1EQ5T753 118 aa2.08□□□□□ -2.08
MED28-201ENST00000237380 LCE1FQ5T754 118 aa2.08□□□□□ -2.08
MED28-201ENST00000237380 KRTAP9-9Q9BYP9 154 aa2.08□□□□□ -2.08
MED28-201ENST00000237380 LCE2AQ5TA79 106 aaPredicted RBP2.07□□□□□ -2.08
MED28-201ENST00000237380 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.04□□□□□ -2.08
MED28-201ENST00000237380 KRTAP9-4Q9BYQ2 154 aa2.04□□□□□ -2.08
MED28-201ENST00000237380 USH2AO75445 5202 aa2.03□□□□□ -2.08
MED28-201ENST00000237380 LPAP08519 4548 aa2.03□□□□□ -2.08
MED28-201ENST00000237380 SYNE1Q8NF91 8797 aaKnown RBP2□□□□□ -2.09
MED28-201ENST00000237380 KRTAP4-7Q9BYR0 210 aa2□□□□□ -2.09
MED28-201ENST00000237380 LOC100996750A0A140TA64 210 aa1.96□□□□□ -2.1
MED28-201ENST00000237380 KRTAP6-2Q3LI66 62 aa1.95□□□□□ -2.1
MED28-201ENST00000237380 FAT4Q6V0I7 4981 aa1.93□□□□□ -2.1
MED28-201ENST00000237380 KRTAP4-3Q9BYR4 195 aa1.9□□□□□ -2.11
MED28-201ENST00000237380 OBSCNQ5VST9 7968 aa1.9□□□□□ -2.11
MED28-201ENST00000237380 KRTAP9-6A8MVA2 160 aa1.89□□□□□ -2.11
MED28-201ENST00000237380 KRTAP4-9Q9BYQ8 210 aa1.88□□□□□ -2.11
MED28-201ENST00000237380 SYNE2Q8WXH0 6885 aaKnown RBP1.88□□□□□ -2.11
MED28-201ENST00000237380 KRTAP6-1Q3LI64 71 aa1.85□□□□□ -2.11
MED28-201ENST00000237380 MUC2Q02817 5179 aa1.84□□□□□ -2.11
MED28-201ENST00000237380 FSIP2Q5CZC0 6907 aa1.79□□□□□ -2.12
MED28-201ENST00000237380 MACF1Q9UPN3 7388 aaKnown RBP1.77□□□□□ -2.13
MED28-201ENST00000237380 KRTAP5-9P26371 169 aa1.75□□□□□ -2.13
MED28-201ENST00000237380 SSPOA2VEC9 5147 aa1.73□□□□□ -2.13
MED28-201ENST00000237380 MDN1Q9NU22 5596 aa1.68□□□□□ -2.14
MED28-201ENST00000237380 DSTQ03001 7570 aaKnown RBP1.67□□□□□ -2.14
MED28-201ENST00000237380 KRTAP5-4Q6L8H1 288 aa1.66□□□□□ -2.14
MED28-201ENST00000237380 MUC12Q9UKN1 5478 aa1.66□□□□□ -2.14
MED28-201ENST00000237380 KRTAP20-2Q3LI61 65 aa1.64□□□□□ -2.15
MED28-201ENST00000237380 NEBP20929 6669 aa1.62□□□□□ -2.15
MED28-201ENST00000237380 GPR98Q8WXG9 6306 aa1.61□□□□□ -2.15
MED28-201ENST00000237380 FCGBPQ9Y6R7 5405 aaPredicted RBP1.59□□□□□ -2.15
MED28-201ENST00000237380 KMT2DO14686 5537 aa1.53□□□□□ -2.16
MED28-201ENST00000237380 KRTAP4-11Q9BYQ6 195 aa1.53□□□□□ -2.16
MED28-201ENST00000237380 KRTAP4-6Q9BYQ5 205 aa1.53□□□□□ -2.17
MED28-201ENST00000237380 KRTAP5-5Q701N2 237 aaPredicted RBP1.48□□□□□ -2.17
MED28-201ENST00000237380 MUC19Q7Z5P9 8384 aa1.45□□□□□ -2.18
MED28-201ENST00000237380 KRTAP5-3Q6L8H2 238 aa1.43□□□□□ -2.18
MED28-201ENST00000237380 AHNAK2Q8IVF2 5795 aa1.42□□□□□ -2.18
MED28-201ENST00000237380 KRTAP4-12Q9BQ66 201 aa1.37□□□□□ -2.19
MED28-201ENST00000237380 KRTAP4-2Q9BYR5 136 aa1.37□□□□□ -2.19
MED28-201ENST00000237380 MUC5ACP98088 5654 aa1.36□□□□□ -2.19
MED28-201ENST00000237380 HMCN1Q96RW7 5635 aa1.36□□□□□ -2.19
MED28-201ENST00000237380 KRTAP4-4Q9BYR3 166 aa1.34□□□□□ -2.2
MED28-201ENST00000237380 PHGR1C9JFL3 82 aa1.3□□□□□ -2.2
MED28-201ENST00000237380 AHNAKQ09666 5890 aaKnown RBP1.26□□□□□ -2.21
MED28-201ENST00000237380 KRTAP5-2Q701N4 177 aa1.26□□□□□ -2.21
MED28-201ENST00000237380 KRTAP5-10Q6L8G5 202 aa1.22□□□□□ -2.21
MED28-201ENST00000237380 MUC5BQ9HC84 5762 aaPredicted RBP1.2□□□□□ -2.22
MED28-201ENST00000237380 KRTAP5-8O75690 187 aa1.17□□□□□ -2.22
MED28-201ENST00000237380 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.17□□□□□ -2.22
MED28-201ENST00000237380 KRTAP5-11Q6L8G4 156 aa1.16□□□□□ -2.22
MED28-201ENST00000237380 KRTAP5-1Q6L8H4 278 aa1.07□□□□□ -2.24
MED28-201ENST00000237380 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
MED28-201ENST00000237380 KRTAP21-2Q3LI59 83 aa1.02□□□□□ -2.25
MED28-201ENST00000237380 KRTAP5-7Q6L8G8 165 aa0.98□□□□□ -2.25
MED28-201ENST00000237380 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 59.2 ms