RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SPTSSBQ8NFR3 76 aa9.6□□□□□ -0.87
CLN3-254ENST00000637050 PRR15LQ9BU68 103 aa9.6□□□□□ -0.87
CLN3-254ENST00000637050 CDC42SE1Q9NRR8 79 aa9.6□□□□□ -0.87
CLN3-254ENST00000637050 HMCN2Q8NDA2 5059 aa9.58□□□□□ -0.88
CLN3-254ENST00000637050 A6NED7 52 aa9.58□□□□□ -0.88
CLN3-254ENST00000637050 DMAC1Q96GE9 116 aa9.45□□□□□ -0.9
CLN3-254ENST00000637050 KRTAP4-1Q9BYQ7 146 aa9.45□□□□□ -0.9
CLN3-254ENST00000637050 LINC01558Q9Y6Z2 57 aa9.42□□□□□ -0.9
CLN3-254ENST00000637050 A8MU10 97 aa9.42□□□□□ -0.9
CLN3-254ENST00000637050 COX6B2Q6YFQ2 88 aa9.41□□□□□ -0.9
CLN3-254ENST00000637050 MUC17Q685J3 4493 aa9.4□□□□□ -0.9
CLN3-254ENST00000637050 COA5Q86WW8 74 aa9.39□□□□□ -0.91
CLN3-254ENST00000637050 KRTAP3-1Q9BYR8 98 aa9.39□□□□□ -0.91
CLN3-254ENST00000637050 ACYP2P14621 99 aa9.36□□□□□ -0.91
CLN3-254ENST00000637050 H3BS24 57 aa9.26□□□□□ -0.93
CLN3-254ENST00000637050 LINC01554Q52M75 96 aa9.26□□□□□ -0.93
CLN3-254ENST00000637050 H1FX-AS1Q4G0G2 97 aa9.21□□□□□ -0.93
CLN3-254ENST00000637050 KRTAP19-2Q3LHN2 52 aa9.2□□□□□ -0.94
CLN3-254ENST00000637050 LCE2DQ5TA82 110 aaPredicted RBP9.19□□□□□ -0.94
CLN3-254ENST00000637050 UBR4Q5T4S7 5183 aa9.13□□□□□ -0.95
CLN3-254ENST00000637050 MUC2Q02817 5179 aa9.11□□□□□ -0.95
CLN3-254ENST00000637050 S4R3F8 94 aa9.11□□□□□ -0.95
CLN3-254ENST00000637050 KRTAP3-3Q9BYR6 98 aa9.07□□□□□ -0.96
CLN3-254ENST00000637050 RNF213Q63HN8 5207 aa9.03□□□□□ -0.96
CLN3-254ENST00000637050 PRAC1Q96KF2 57 aa9.03□□□□□ -0.96
CLN3-254ENST00000637050 LCE2CQ5TA81 110 aa9.01□□□□□ -0.97
CLN3-254ENST00000637050 SPATA8Q6RVD6 105 aa8.97□□□□□ -0.97
CLN3-254ENST00000637050 CSAG1Q6PB30 78 aa8.92□□□□□ -0.98
CLN3-254ENST00000637050 A0A1B0GU69 56 aa8.91□□□□□ -0.98
CLN3-254ENST00000637050 UQCR11O14957 56 aa8.89□□□□□ -0.99
CLN3-254ENST00000637050 MIR22HGQ0VDD5 57 aa8.88□□□□□ -0.99
CLN3-254ENST00000637050 ADM2Q7Z4H4 148 aa8.86□□□□□ -0.99
CLN3-254ENST00000637050 MT1HP80294 61 aa8.83□□□□□ -1
CLN3-254ENST00000637050 FLGP20930 4061 aaPredicted RBP8.83□□□□□ -1
CLN3-254ENST00000637050 FAT4Q6V0I7 4981 aa8.75□□□□□ -1.01
CLN3-254ENST00000637050 H0YAA0 97 aa8.74□□□□□ -1.01
CLN3-254ENST00000637050 KRTAP3-2Q9BYR7 98 aa8.72□□□□□ -1.01
CLN3-254ENST00000637050 M0R2T5 61 aa8.69□□□□□ -1.02
CLN3-254ENST00000637050 KRTAP10-6P60371 365 aaPredicted RBP8.69□□□□□ -1.02
CLN3-254ENST00000637050 P0C880 135 aa8.64□□□□□ -1.03
CLN3-254ENST00000637050 ROMO1P60602 79 aa8.62□□□□□ -1.03
CLN3-254ENST00000637050 KRTAP25-1Q3LHN0 102 aa8.59□□□□□ -1.03
CLN3-254ENST00000637050 A0A1B0GU33 70 aa8.57□□□□□ -1.04
CLN3-254ENST00000637050 LCE2AQ5TA79 106 aaPredicted RBP8.57□□□□□ -1.04
CLN3-254ENST00000637050 KRTAP9-8Q9BYQ0 159 aa8.49□□□□□ -1.05
CLN3-254ENST00000637050 LORP23490 312 aaPredicted RBP8.47□□□□□ -1.05
CLN3-254ENST00000637050 MT2AP02795 61 aa8.46□□□□□ -1.06
CLN3-254ENST00000637050 KRTAP13-4Q3LI77 160 aa8.43□□□□□ -1.06
CLN3-254ENST00000637050 M0QZ58 72 aa8.41□□□□□ -1.06
CLN3-254ENST00000637050 MT1FP04733 61 aa8.4□□□□□ -1.06
CLN3-254ENST00000637050 CRIPTQ9P021 101 aa8.39□□□□□ -1.07
CLN3-254ENST00000637050 R4GN34 69 aa8.39□□□□□ -1.07
CLN3-254ENST00000637050 K7ERS5 55 aa8.38□□□□□ -1.07
CLN3-254ENST00000637050 KRTAP10-10P60014 251 aa8.37□□□□□ -1.07
CLN3-254ENST00000637050 SPRR2GQ9BYE4 73 aa8.25□□□□□ -1.09
CLN3-254ENST00000637050 A0A0D9SG42 100 aa8.24□□□□□ -1.09
CLN3-254ENST00000637050 KRTAP19-1Q8IUB9 90 aa8.23□□□□□ -1.09
CLN3-254ENST00000637050 KRTAP9-3Q9BYQ3 159 aa8.2□□□□□ -1.1
CLN3-254ENST00000637050 SPINT4Q6UDR6 99 aa8.12□□□□□ -1.11
CLN3-254ENST00000637050 KRTAP12-1P59990 96 aa8.11□□□□□ -1.11
CLN3-254ENST00000637050 KRTAP12-2P59991 146 aa8.08□□□□□ -1.12
CLN3-254ENST00000637050 KRTAP19-8Q3LI54 63 aa8.05□□□□□ -1.12
CLN3-254ENST00000637050 A0A0A0MQY5 61 aa8.02□□□□□ -1.13
CLN3-254ENST00000637050 LCE2BO14633 110 aa7.98□□□□□ -1.13
CLN3-254ENST00000637050 NDUFAF8A1L188 74 aa7.95□□□□□ -1.14
CLN3-254ENST00000637050 MT1BP07438 61 aa7.95□□□□□ -1.14
CLN3-254ENST00000637050 KRTAP15-1Q3LI76 137 aa7.93□□□□□ -1.14
CLN3-254ENST00000637050 PLAC4Q8WY50 150 aa7.92□□□□□ -1.14
CLN3-254ENST00000637050 CAMK2N1Q7Z7J9 78 aa7.83□□□□□ -1.16
CLN3-254ENST00000637050 LUZP6Q538Z0 58 aa7.7□□□□□ -1.18
CLN3-254ENST00000637050 C10orf95Q9H7T3 257 aa7.68□□□□□ -1.18
CLN3-254ENST00000637050 USH2AO75445 5202 aa7.67□□□□□ -1.18
CLN3-254ENST00000637050 MT1XP80297 61 aa7.67□□□□□ -1.18
CLN3-254ENST00000637050 KRTAP10-5P60370 271 aa7.64□□□□□ -1.19
CLN3-254ENST00000637050 PRO2289Q9P1D8 64 aa7.57□□□□□ -1.2
CLN3-254ENST00000637050 LOC100996750A0A140TA64 210 aa7.56□□□□□ -1.2
CLN3-254ENST00000637050 KRTAP4-6Q9BYQ5 205 aa7.56□□□□□ -1.2
CLN3-254ENST00000637050 KRTAP9-2Q9BYQ4 174 aa7.54□□□□□ -1.2
CLN3-254ENST00000637050 KRTAP19-6Q3LI70 58 aa7.53□□□□□ -1.2
CLN3-254ENST00000637050 SSPOA2VEC9 5147 aa7.45□□□□□ -1.22
CLN3-254ENST00000637050 TNP1P09430 55 aa7.45□□□□□ -1.22
CLN3-254ENST00000637050 FSIP2Q5CZC0 6907 aa7.37□□□□□ -1.23
CLN3-254ENST00000637050 KRTAP10-7P60409 375 aaPredicted RBP7.34□□□□□ -1.23
CLN3-254ENST00000637050 KRTAP10-12P60413 245 aa7.27□□□□□ -1.25
CLN3-254ENST00000637050 CRCT1Q9UGL9 99 aa7.26□□□□□ -1.25
CLN3-254ENST00000637050 KRTAP23-1A1A580 65 aa7.22□□□□□ -1.25
CLN3-254ENST00000637050 PP632Q6XCG6 107 aa7.18□□□□□ -1.26
CLN3-254ENST00000637050 LCE3AQ5TA76 89 aa7.16□□□□□ -1.26
CLN3-254ENST00000637050 FCGBPQ9Y6R7 5405 aaPredicted RBP7.16□□□□□ -1.26
CLN3-254ENST00000637050 KRTAP4-8A0A0G2JLE6 195 aa7.07□□□□□ -1.28
CLN3-254ENST00000637050 KRTAP4-8Q9BYQ9 185 aa7.07□□□□□ -1.28
CLN3-254ENST00000637050 KRTAP8-1Q8IUC2 63 aa7.03□□□□□ -1.28
CLN3-254ENST00000637050 KRTAP9-6A0A140TA67 174 aa6.98□□□□□ -1.29
CLN3-254ENST00000637050 KMT2DO14686 5537 aa6.92□□□□□ -1.3
CLN3-254ENST00000637050 KRTAP19-5Q3LI72 72 aa6.89□□□□□ -1.31
CLN3-254ENST00000637050 KRTAP12-3P60328 96 aa6.88□□□□□ -1.31
CLN3-254ENST00000637050 KRTAP19-7Q3SYF9 63 aa6.84□□□□□ -1.31
CLN3-254ENST00000637050 MACF1Q9UPN3 7388 aaKnown RBP6.75□□□□□ -1.33
CLN3-254ENST00000637050 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.73□□□□□ -1.33
CLN3-254ENST00000637050 SPRR5A0A1B0GTR4 108 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms