RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MIR22HGQ0VDD5 57 aa8.12□□□□□ -1.11
CPSF1-213ENST00000620219 A0A0D9SG42 100 aa8.11□□□□□ -1.11
CPSF1-213ENST00000620219 PKHD1L1Q86WI1 4243 aa8.1□□□□□ -1.11
CPSF1-213ENST00000620219 K7ERS5 55 aa8.1□□□□□ -1.11
CPSF1-213ENST00000620219 HERC2O95714 4834 aa8.1□□□□□ -1.11
CPSF1-213ENST00000620219 H1FX-AS1Q4G0G2 97 aa8.09□□□□□ -1.11
CPSF1-213ENST00000620219 LCA10Q71F78 164 aa8.09□□□□□ -1.11
CPSF1-213ENST00000620219 LINC01554Q52M75 96 aa8.08□□□□□ -1.12
CPSF1-213ENST00000620219 KTN1-AS1Q86SY8 53 aa8.08□□□□□ -1.12
CPSF1-213ENST00000620219 M0R2T5 61 aa8.08□□□□□ -1.12
CPSF1-213ENST00000620219 KRTAP3-1Q9BYR8 98 aa8.08□□□□□ -1.12
CPSF1-213ENST00000620219 A0A1B0GU33 70 aa8.07□□□□□ -1.12
CPSF1-213ENST00000620219 CDC42SE1Q9NRR8 79 aa8.06□□□□□ -1.12
CPSF1-213ENST00000620219 SPATA8Q6RVD6 105 aa7.97□□□□□ -1.13
CPSF1-213ENST00000620219 ADM2Q7Z4H4 148 aa7.97□□□□□ -1.13
CPSF1-213ENST00000620219 LRP2P98164 4655 aa7.96□□□□□ -1.13
CPSF1-213ENST00000620219 BIRC6Q9NR09 4857 aa7.96□□□□□ -1.14
CPSF1-213ENST00000620219 TNXBP22105 4242 aa7.95□□□□□ -1.14
CPSF1-213ENST00000620219 ABCA13Q86UQ4 5058 aa7.95□□□□□ -1.14
CPSF1-213ENST00000620219 SPINT4Q6UDR6 99 aa7.91□□□□□ -1.14
CPSF1-213ENST00000620219 LPAP08519 4548 aa7.89□□□□□ -1.15
CPSF1-213ENST00000620219 R4GN34 69 aa7.85□□□□□ -1.15
CPSF1-213ENST00000620219 M0QZ58 72 aa7.8□□□□□ -1.16
CPSF1-213ENST00000620219 P0C880 135 aa7.76□□□□□ -1.17
CPSF1-213ENST00000620219 H0YAA0 97 aa7.74□□□□□ -1.17
CPSF1-213ENST00000620219 PRAC1Q96KF2 57 aa7.71□□□□□ -1.17
CPSF1-213ENST00000620219 KRTAP3-3Q9BYR6 98 aa7.7□□□□□ -1.18
CPSF1-213ENST00000620219 KRTAP4-1Q9BYQ7 146 aa7.68□□□□□ -1.18
CPSF1-213ENST00000620219 H3BS24 57 aa7.67□□□□□ -1.18
CPSF1-213ENST00000620219 A6NN06 94 aa7.66□□□□□ -1.18
CPSF1-213ENST00000620219 HERC1Q15751 4861 aa7.64□□□□□ -1.19
CPSF1-213ENST00000620219 CRIPTQ9P021 101 aa7.64□□□□□ -1.19
CPSF1-213ENST00000620219 CAMK2N1Q7Z7J9 78 aa7.6□□□□□ -1.19
CPSF1-213ENST00000620219 KRTAP10-6P60371 365 aaPredicted RBP7.57□□□□□ -1.2
CPSF1-213ENST00000620219 MUC2Q02817 5179 aa7.56□□□□□ -1.2
CPSF1-213ENST00000620219 PCLOQ9Y6V0 5065 aa7.55□□□□□ -1.2
CPSF1-213ENST00000620219 KRTAP13-4Q3LI77 160 aa7.55□□□□□ -1.2
CPSF1-213ENST00000620219 KRTAP3-2Q9BYR7 98 aa7.5□□□□□ -1.21
CPSF1-213ENST00000620219 KRTAP10-10P60014 251 aa7.44□□□□□ -1.22
CPSF1-213ENST00000620219 RNF213Q63HN8 5207 aa7.37□□□□□ -1.23
CPSF1-213ENST00000620219 ROMO1P60602 79 aa7.36□□□□□ -1.23
CPSF1-213ENST00000620219 KRTAP12-2P59991 146 aa7.34□□□□□ -1.23
CPSF1-213ENST00000620219 PLAC4Q8WY50 150 aa7.33□□□□□ -1.24
CPSF1-213ENST00000620219 LORP23490 312 aaPredicted RBP7.31□□□□□ -1.24
CPSF1-213ENST00000620219 UBR4Q5T4S7 5183 aa7.3□□□□□ -1.24
CPSF1-213ENST00000620219 HMCN2Q8NDA2 5059 aa7.27□□□□□ -1.25
CPSF1-213ENST00000620219 FAT4Q6V0I7 4981 aa7.25□□□□□ -1.25
CPSF1-213ENST00000620219 KRTAP12-1P59990 96 aa7.24□□□□□ -1.25
CPSF1-213ENST00000620219 C10orf95Q9H7T3 257 aa7.22□□□□□ -1.25
CPSF1-213ENST00000620219 MUC17Q685J3 4493 aa7.15□□□□□ -1.26
CPSF1-213ENST00000620219 MT1HP80294 61 aa7.13□□□□□ -1.27
CPSF1-213ENST00000620219 KRTAP25-1Q3LHN0 102 aa7.13□□□□□ -1.27
CPSF1-213ENST00000620219 KRTAP19-2Q3LHN2 52 aa7.07□□□□□ -1.28
CPSF1-213ENST00000620219 LCE2CQ5TA81 110 aa7.01□□□□□ -1.29
CPSF1-213ENST00000620219 FLGP20930 4061 aaPredicted RBP6.96□□□□□ -1.3
CPSF1-213ENST00000620219 TNP1P09430 55 aa6.95□□□□□ -1.3
CPSF1-213ENST00000620219 MT2AP02795 61 aa6.93□□□□□ -1.3
CPSF1-213ENST00000620219 MT1FP04733 61 aa6.9□□□□□ -1.3
CPSF1-213ENST00000620219 NDUFAF8A1L188 74 aa6.76□□□□□ -1.33
CPSF1-213ENST00000620219 KRTAP9-8Q9BYQ0 159 aa6.73□□□□□ -1.33
CPSF1-213ENST00000620219 PRO2289Q9P1D8 64 aa6.72□□□□□ -1.33
CPSF1-213ENST00000620219 LUZP6Q538Z0 58 aa6.72□□□□□ -1.33
CPSF1-213ENST00000620219 SPRR2GQ9BYE4 73 aa6.7□□□□□ -1.34
CPSF1-213ENST00000620219 KRTAP19-1Q8IUB9 90 aa6.7□□□□□ -1.34
CPSF1-213ENST00000620219 A0A0A0MQY5 61 aa6.68□□□□□ -1.34
CPSF1-213ENST00000620219 FSIP2Q5CZC0 6907 aa6.67□□□□□ -1.34
CPSF1-213ENST00000620219 PP632Q6XCG6 107 aa6.6□□□□□ -1.35
CPSF1-213ENST00000620219 KRTAP9-3Q9BYQ3 159 aa6.48□□□□□ -1.37
CPSF1-213ENST00000620219 MT1BP07438 61 aa6.43□□□□□ -1.38
CPSF1-213ENST00000620219 LCE2AQ5TA79 106 aaPredicted RBP6.42□□□□□ -1.38
CPSF1-213ENST00000620219 USH2AO75445 5202 aa6.42□□□□□ -1.38
CPSF1-213ENST00000620219 KRTAP19-8Q3LI54 63 aa6.41□□□□□ -1.38
CPSF1-213ENST00000620219 KRTAP10-12P60413 245 aa6.4□□□□□ -1.39
CPSF1-213ENST00000620219 LCE3AQ5TA76 89 aa6.38□□□□□ -1.39
CPSF1-213ENST00000620219 LCE2BO14633 110 aa6.37□□□□□ -1.39
CPSF1-213ENST00000620219 MT1XP80297 61 aa6.29□□□□□ -1.4
CPSF1-213ENST00000620219 KRTAP10-5P60370 271 aa6.26□□□□□ -1.41
CPSF1-213ENST00000620219 KRTAP10-7P60409 375 aaPredicted RBP6.22□□□□□ -1.41
CPSF1-213ENST00000620219 KRTAP15-1Q3LI76 137 aa6.22□□□□□ -1.41
CPSF1-213ENST00000620219 KRTAP12-3P60328 96 aa6.18□□□□□ -1.42
CPSF1-213ENST00000620219 KMT2DO14686 5537 aa6.07□□□□□ -1.44
CPSF1-213ENST00000620219 KRTAP23-1A1A580 65 aa6.07□□□□□ -1.44
CPSF1-213ENST00000620219 KRTAP4-8A0A0G2JLE6 195 aa6.06□□□□□ -1.44
CPSF1-213ENST00000620219 KRTAP4-8Q9BYQ9 185 aa6.06□□□□□ -1.44
CPSF1-213ENST00000620219 KRTAP8-1Q8IUC2 63 aa6.01□□□□□ -1.45
CPSF1-213ENST00000620219 KRTAP19-5Q3LI72 72 aa5.98□□□□□ -1.45
CPSF1-213ENST00000620219 SSPOA2VEC9 5147 aa5.87□□□□□ -1.47
CPSF1-213ENST00000620219 KRTAP9-2Q9BYQ4 174 aa5.85□□□□□ -1.47
CPSF1-213ENST00000620219 KRTAP19-6Q3LI70 58 aa5.8□□□□□ -1.48
CPSF1-213ENST00000620219 SPRR2FQ96RM1 72 aa5.8□□□□□ -1.48
CPSF1-213ENST00000620219 CRCT1Q9UGL9 99 aa5.77□□□□□ -1.49
CPSF1-213ENST00000620219 LCE2DQ5TA82 110 aaPredicted RBP5.76□□□□□ -1.49
CPSF1-213ENST00000620219 FCGBPQ9Y6R7 5405 aaPredicted RBP5.67□□□□□ -1.5
CPSF1-213ENST00000620219 KRTAP4-7Q9BYR0 210 aa5.61□□□□□ -1.51
CPSF1-213ENST00000620219 LCE3CQ5T5A8 94 aa5.61□□□□□ -1.51
CPSF1-213ENST00000620219 DSTQ03001 7570 aaKnown RBP5.58□□□□□ -1.52
CPSF1-213ENST00000620219 SYNE2Q8WXH0 6885 aaKnown RBP5.56□□□□□ -1.52
CPSF1-213ENST00000620219 MUC12Q9UKN1 5478 aa5.56□□□□□ -1.52
CPSF1-213ENST00000620219 MACF1Q9UPN3 7388 aaKnown RBP5.55□□□□□ -1.52
CPSF1-213ENST00000620219 KRTAP19-7Q3SYF9 63 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms