RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 MUC2Q02817 5179 aa4.14□□□□□ -1.75
NEK3-207ENST00000617054 SPINK7P58062 85 aa4.13□□□□□ -1.75
NEK3-207ENST00000617054 C7orf65Q6ZTY9 151 aa4.13□□□□□ -1.75
NEK3-207ENST00000617054 ATP11AUNQ6ZP68 121 aa4.12□□□□□ -1.75
NEK3-207ENST00000617054 A8MUN3 132 aa4.11□□□□□ -1.75
NEK3-207ENST00000617054 ADM2Q7Z4H4 148 aa4.1□□□□□ -1.75
NEK3-207ENST00000617054 Q1T7F1 81 aa4.1□□□□□ -1.75
NEK3-207ENST00000617054 PRO0628Q9UI54 55 aa4.1□□□□□ -1.75
NEK3-207ENST00000617054 RPL37P61927 97 aaKnown RBP4.1□□□□□ -1.75
NEK3-207ENST00000617054 KRTAP15-1Q3LI76 137 aa4.08□□□□□ -1.76
NEK3-207ENST00000617054 DMAC1Q96GE9 116 aa4.08□□□□□ -1.76
NEK3-207ENST00000617054 ACYP2P14621 99 aa4.08□□□□□ -1.76
NEK3-207ENST00000617054 Q5VV11 94 aa4.06□□□□□ -1.76
NEK3-207ENST00000617054 CHKB-CPT1BH3BT56 60 aa4.06□□□□□ -1.76
NEK3-207ENST00000617054 TPRXLQ17RH7 258 aa4.05□□□□□ -1.76
NEK3-207ENST00000617054 PRR15LQ9BU68 103 aa4.04□□□□□ -1.76
NEK3-207ENST00000617054 LCE4AQ5TA78 99 aa3.99□□□□□ -1.77
NEK3-207ENST00000617054 HMCN2Q8NDA2 5059 aa3.98□□□□□ -1.77
NEK3-207ENST00000617054 COX6B2Q6YFQ2 88 aa3.98□□□□□ -1.77
NEK3-207ENST00000617054 LCA10Q71F78 164 aa3.98□□□□□ -1.77
NEK3-207ENST00000617054 RNF213Q63HN8 5207 aa3.98□□□□□ -1.77
NEK3-207ENST00000617054 MUC17Q685J3 4493 aa3.97□□□□□ -1.77
NEK3-207ENST00000617054 KRTAP4-1Q9BYQ7 146 aa3.96□□□□□ -1.77
NEK3-207ENST00000617054 PMAIP1Q13794 54 aa3.96□□□□□ -1.78
NEK3-207ENST00000617054 UBR4Q5T4S7 5183 aa3.95□□□□□ -1.78
NEK3-207ENST00000617054 A6NED7 52 aa3.95□□□□□ -1.78
NEK3-207ENST00000617054 LINC01558Q9Y6Z2 57 aa3.94□□□□□ -1.78
NEK3-207ENST00000617054 SPTSSBQ8NFR3 76 aa3.93□□□□□ -1.78
NEK3-207ENST00000617054 A0A1B0GU69 56 aa3.91□□□□□ -1.78
NEK3-207ENST00000617054 FAT4Q6V0I7 4981 aa3.9□□□□□ -1.78
NEK3-207ENST00000617054 S4R3F8 94 aa3.88□□□□□ -1.79
NEK3-207ENST00000617054 H1FX-AS1Q4G0G2 97 aa3.87□□□□□ -1.79
NEK3-207ENST00000617054 LUZP6Q538Z0 58 aa3.86□□□□□ -1.79
NEK3-207ENST00000617054 CDC42SE1Q9NRR8 79 aa3.85□□□□□ -1.79
NEK3-207ENST00000617054 KRTAP9-6A0A140TA67 174 aa3.83□□□□□ -1.8
NEK3-207ENST00000617054 A6NN06 94 aa3.83□□□□□ -1.8
NEK3-207ENST00000617054 KRTAP9-7A8MTY7 169 aa3.83□□□□□ -1.8
NEK3-207ENST00000617054 KRTAP9-4Q9BYQ2 154 aa3.83□□□□□ -1.8
NEK3-207ENST00000617054 KRTAP9-9Q9BYP9 154 aa3.83□□□□□ -1.8
NEK3-207ENST00000617054 SPATA8Q6RVD6 105 aa3.8□□□□□ -1.8
NEK3-207ENST00000617054 KRTAP19-2Q3LHN2 52 aa3.79□□□□□ -1.8
NEK3-207ENST00000617054 P0C880 135 aa3.78□□□□□ -1.8
NEK3-207ENST00000617054 UQCR11O14957 56 aa3.78□□□□□ -1.8
NEK3-207ENST00000617054 KRTAP10-6P60371 365 aaPredicted RBP3.78□□□□□ -1.8
NEK3-207ENST00000617054 A0A1B0GU33 70 aa3.77□□□□□ -1.81
NEK3-207ENST00000617054 MIR22HGQ0VDD5 57 aa3.77□□□□□ -1.81
NEK3-207ENST00000617054 CSAG1Q6PB30 78 aa3.76□□□□□ -1.81
NEK3-207ENST00000617054 FLGP20930 4061 aaPredicted RBP3.76□□□□□ -1.81
NEK3-207ENST00000617054 KTN1-AS1Q86SY8 53 aa3.76□□□□□ -1.81
NEK3-207ENST00000617054 H0YAA0 97 aa3.75□□□□□ -1.81
NEK3-207ENST00000617054 KRTAP13-4Q3LI77 160 aa3.74□□□□□ -1.81
NEK3-207ENST00000617054 A0A0D9SG42 100 aa3.71□□□□□ -1.81
NEK3-207ENST00000617054 NDUFAF8A1L188 74 aa3.71□□□□□ -1.82
NEK3-207ENST00000617054 LCE5AQ5TCM9 118 aa3.68□□□□□ -1.82
NEK3-207ENST00000617054 LINC01554Q52M75 96 aa3.65□□□□□ -1.83
NEK3-207ENST00000617054 M0R2T5 61 aa3.64□□□□□ -1.83
NEK3-207ENST00000617054 M0QZ58 72 aa3.62□□□□□ -1.83
NEK3-207ENST00000617054 MT1HP80294 61 aa3.61□□□□□ -1.83
NEK3-207ENST00000617054 KRTAP19-1Q8IUB9 90 aa3.61□□□□□ -1.83
NEK3-207ENST00000617054 R4GN34 69 aa3.61□□□□□ -1.83
NEK3-207ENST00000617054 SPINT4Q6UDR6 99 aa3.59□□□□□ -1.83
NEK3-207ENST00000617054 KRTAP12-2P59991 146 aa3.59□□□□□ -1.84
NEK3-207ENST00000617054 CRIPTQ9P021 101 aa3.57□□□□□ -1.84
NEK3-207ENST00000617054 KRTAP12-1P59990 96 aa3.54□□□□□ -1.84
NEK3-207ENST00000617054 K7ERS5 55 aa3.52□□□□□ -1.85
NEK3-207ENST00000617054 MT1FP04733 61 aa3.49□□□□□ -1.85
NEK3-207ENST00000617054 KRTAP10-10P60014 251 aa3.49□□□□□ -1.85
NEK3-207ENST00000617054 KRTAP19-4Q3LI73 84 aa3.49□□□□□ -1.85
NEK3-207ENST00000617054 KRTAP9-8Q9BYQ0 159 aa3.49□□□□□ -1.85
NEK3-207ENST00000617054 MT2AP02795 61 aa3.48□□□□□ -1.85
NEK3-207ENST00000617054 KRTAP25-1Q3LHN0 102 aa3.48□□□□□ -1.85
NEK3-207ENST00000617054 CAMK2N1Q7Z7J9 78 aa3.48□□□□□ -1.85
NEK3-207ENST00000617054 USH2AO75445 5202 aa3.46□□□□□ -1.86
NEK3-207ENST00000617054 KRTAP9-3Q9BYQ3 159 aa3.46□□□□□ -1.86
NEK3-207ENST00000617054 ROMO1P60602 79 aa3.43□□□□□ -1.86
NEK3-207ENST00000617054 C10orf95Q9H7T3 257 aa3.42□□□□□ -1.86
NEK3-207ENST00000617054 SPRR2GQ9BYE4 73 aa3.39□□□□□ -1.87
NEK3-207ENST00000617054 FSIP2Q5CZC0 6907 aa3.36□□□□□ -1.87
NEK3-207ENST00000617054 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
NEK3-207ENST00000617054 PLAC4Q8WY50 150 aa3.32□□□□□ -1.88
NEK3-207ENST00000617054 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
NEK3-207ENST00000617054 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.32□□□□□ -1.88
NEK3-207ENST00000617054 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
NEK3-207ENST00000617054 MT1BP07438 61 aa3.29□□□□□ -1.88
NEK3-207ENST00000617054 KRTAP9-2Q9BYQ4 174 aa3.28□□□□□ -1.88
NEK3-207ENST00000617054 KRTAP19-8Q3LI54 63 aa3.27□□□□□ -1.89
NEK3-207ENST00000617054 KMT2DO14686 5537 aa3.26□□□□□ -1.89
NEK3-207ENST00000617054 KRTAP10-5P60370 271 aa3.21□□□□□ -1.9
NEK3-207ENST00000617054 MT1XP80297 61 aa3.21□□□□□ -1.9
NEK3-207ENST00000617054 TNP1P09430 55 aa3.19□□□□□ -1.9
NEK3-207ENST00000617054 SSPOA2VEC9 5147 aa3.19□□□□□ -1.9
NEK3-207ENST00000617054 KRTAP4-8Q9BYQ9 185 aa3.18□□□□□ -1.9
NEK3-207ENST00000617054 LCE1AQ5T7P2 110 aa3.18□□□□□ -1.9
NEK3-207ENST00000617054 LOC100996750A0A140TA64 210 aa3.16□□□□□ -1.9
NEK3-207ENST00000617054 KRTAP4-6Q9BYQ5 205 aa3.16□□□□□ -1.9
NEK3-207ENST00000617054 LCE3BQ5TA77 95 aa3.16□□□□□ -1.9
NEK3-207ENST00000617054 KRTAP10-7P60409 375 aaPredicted RBP3.14□□□□□ -1.91
NEK3-207ENST00000617054 LCE3AQ5TA76 89 aa3.11□□□□□ -1.91
NEK3-207ENST00000617054 LCE3EQ5T5B0 92 aa3.09□□□□□ -1.91
NEK3-207ENST00000617054 PRO2289Q9P1D8 64 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms