RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KRTAP19-6Q3LI70 58 aa9.12□□□□□ -0.95
CDX1-202ENST00000616154 CYP4F30PQ9H0H9 118 aa9.12□□□□□ -0.95
CDX1-202ENST00000616154 C1orf64Q8NEQ6 169 aa9.09□□□□□ -0.95
CDX1-202ENST00000616154 LINC00208Q96KT6 92 aa9.09□□□□□ -0.95
CDX1-202ENST00000616154 COX7CP15954 63 aa9.02□□□□□ -0.97
CDX1-202ENST00000616154 H1FX-AS1Q4G0G2 97 aa9.01□□□□□ -0.97
CDX1-202ENST00000616154 KLKP1Q107X0 134 aa8.98□□□□□ -0.97
CDX1-202ENST00000616154 ANAPC13Q9BS18 74 aa8.98□□□□□ -0.97
CDX1-202ENST00000616154 C4orf26Q17RF5 130 aa8.95□□□□□ -0.98
CDX1-202ENST00000616154 C20orf197Q8N268 126 aa8.95□□□□□ -0.98
CDX1-202ENST00000616154 SNURFQ9Y675 71 aa8.91□□□□□ -0.98
CDX1-202ENST00000616154 KRTAP3-1Q9BYR8 98 aa8.9□□□□□ -0.98
CDX1-202ENST00000616154 KRTAP6-3Q3LI67 103 aa8.85□□□□□ -0.99
CDX1-202ENST00000616154 CCDC179H3BU77 68 aa8.8□□□□□ -1
CDX1-202ENST00000616154 CYSTM1Q9H1C7 97 aa8.8□□□□□ -1
CDX1-202ENST00000616154 A8MUN3 132 aa8.8□□□□□ -1
CDX1-202ENST00000616154 NDUFC1O43677 76 aa8.8□□□□□ -1
CDX1-202ENST00000616154 SPANXA2-OT1Q8N9U9 137 aa8.79□□□□□ -1
CDX1-202ENST00000616154 H7BZZ5 65 aa8.77□□□□□ -1.01
CDX1-202ENST00000616154 DMAC1Q96GE9 116 aa8.77□□□□□ -1.01
CDX1-202ENST00000616154 S4R3F8 94 aa8.67□□□□□ -1.02
CDX1-202ENST00000616154 NEBP20929 6669 aa8.66□□□□□ -1.02
CDX1-202ENST00000616154 LCA10Q71F78 164 aa8.63□□□□□ -1.03
CDX1-202ENST00000616154 KRTAP3-3Q9BYR6 98 aa8.62□□□□□ -1.03
CDX1-202ENST00000616154 ACYP2P14621 99 aa8.61□□□□□ -1.03
CDX1-202ENST00000616154 CSAG1Q6PB30 78 aa8.61□□□□□ -1.03
CDX1-202ENST00000616154 PCP4P48539 62 aa8.58□□□□□ -1.04
CDX1-202ENST00000616154 A6NN06 94 aa8.57□□□□□ -1.04
CDX1-202ENST00000616154 MT1BP07438 61 aa8.56□□□□□ -1.04
CDX1-202ENST00000616154 Q5VV11 94 aa8.54□□□□□ -1.04
CDX1-202ENST00000616154 ATP5EP56381 51 aaPredicted RBP8.53□□□□□ -1.04
CDX1-202ENST00000616154 TMEM258P61165 79 aa8.53□□□□□ -1.04
CDX1-202ENST00000616154 KRTAP19-8Q3LI54 63 aa8.53□□□□□ -1.04
CDX1-202ENST00000616154 SPRR2GQ9BYE4 73 aa8.52□□□□□ -1.05
CDX1-202ENST00000616154 MUC12Q9UKN1 5478 aa8.52□□□□□ -1.05
CDX1-202ENST00000616154 COA5Q86WW8 74 aa8.46□□□□□ -1.06
CDX1-202ENST00000616154 KRTAP10-5P60370 271 aa8.44□□□□□ -1.06
CDX1-202ENST00000616154 CHKB-CPT1BH3BT56 60 aa8.4□□□□□ -1.06
CDX1-202ENST00000616154 SPTSSBQ8NFR3 76 aa8.37□□□□□ -1.07
CDX1-202ENST00000616154 H0YAA0 97 aa8.36□□□□□ -1.07
CDX1-202ENST00000616154 CRIPTQ9P021 101 aa8.35□□□□□ -1.07
CDX1-202ENST00000616154 KRTAP5-9P26371 169 aa8.34□□□□□ -1.07
CDX1-202ENST00000616154 KRTAP20-1Q3LI63 56 aa8.33□□□□□ -1.08
CDX1-202ENST00000616154 KMT2DO14686 5537 aa8.27□□□□□ -1.09
CDX1-202ENST00000616154 SERP1Q9Y6X1 66 aa8.25□□□□□ -1.09
CDX1-202ENST00000616154 MDN1Q9NU22 5596 aa8.24□□□□□ -1.09
CDX1-202ENST00000616154 KRTAP3-2Q9BYR7 98 aa8.23□□□□□ -1.09
CDX1-202ENST00000616154 ADM2Q7Z4H4 148 aa8.2□□□□□ -1.1
CDX1-202ENST00000616154 P0C880 135 aa8.14□□□□□ -1.11
CDX1-202ENST00000616154 RPS28P62857 69 aaKnown RBP8.1□□□□□ -1.11
CDX1-202ENST00000616154 KRTAP2-3P0C7H8 128 aa8.03□□□□□ -1.12
CDX1-202ENST00000616154 KRTAP2-4Q9BYR9 128 aa8.03□□□□□ -1.12
CDX1-202ENST00000616154 LINC01558Q9Y6Z2 57 aa8.03□□□□□ -1.12
CDX1-202ENST00000616154 SEC61GP60059 68 aa8.02□□□□□ -1.13
CDX1-202ENST00000616154 SPRR2FQ96RM1 72 aa8□□□□□ -1.13
CDX1-202ENST00000616154 PRO2289Q9P1D8 64 aa8□□□□□ -1.13
CDX1-202ENST00000616154 SMIM26A0A096LP01 95 aa7.98□□□□□ -1.13
CDX1-202ENST00000616154 A0A1B0GU69 56 aa7.98□□□□□ -1.13
CDX1-202ENST00000616154 MT1XP80297 61 aa7.96□□□□□ -1.14
CDX1-202ENST00000616154 SPRR2EP22531 72 aa7.95□□□□□ -1.14
CDX1-202ENST00000616154 SPRR2BP35325 72 aa7.95□□□□□ -1.14
CDX1-202ENST00000616154 SPRR2AP35326 72 aa7.95□□□□□ -1.14
CDX1-202ENST00000616154 Q1T7F1 81 aa7.94□□□□□ -1.14
CDX1-202ENST00000616154 R4GN34 69 aa7.94□□□□□ -1.14
CDX1-202ENST00000616154 M0QZ58 72 aa7.92□□□□□ -1.14
CDX1-202ENST00000616154 V9GYY9 64 aa7.92□□□□□ -1.14
CDX1-202ENST00000616154 PRR15LQ9BU68 103 aa7.9□□□□□ -1.14
CDX1-202ENST00000616154 PLAC4Q8WY50 150 aa7.88□□□□□ -1.15
CDX1-202ENST00000616154 A0A1B0GU33 70 aa7.87□□□□□ -1.15
CDX1-202ENST00000616154 KRTAP8-1Q8IUC2 63 aa7.87□□□□□ -1.15
CDX1-202ENST00000616154 KRTAP13-4Q3LI77 160 aa7.86□□□□□ -1.15
CDX1-202ENST00000616154 KRTAP12-2P59991 146 aa7.84□□□□□ -1.15
CDX1-202ENST00000616154 LCE1AQ5T7P2 110 aa7.82□□□□□ -1.16
CDX1-202ENST00000616154 KRTAP2-2Q9BYT5 123 aa7.77□□□□□ -1.17
CDX1-202ENST00000616154 KRTAP2-1Q9BYU5 128 aa7.77□□□□□ -1.17
CDX1-202ENST00000616154 PSPHP1O15172 72 aa7.74□□□□□ -1.17
CDX1-202ENST00000616154 SPATA8Q6RVD6 105 aa7.74□□□□□ -1.17
CDX1-202ENST00000616154 LINC01554Q52M75 96 aa7.71□□□□□ -1.18
CDX1-202ENST00000616154 KRTAP4-8A0A0G2JLE6 195 aa7.7□□□□□ -1.18
CDX1-202ENST00000616154 KRTAP4-8Q9BYQ9 185 aa7.7□□□□□ -1.18
CDX1-202ENST00000616154 UQCR11O14957 56 aa7.69□□□□□ -1.18
CDX1-202ENST00000616154 SPRR2DP22532 72 aa7.69□□□□□ -1.18
CDX1-202ENST00000616154 A0A0D9SG42 100 aa7.58□□□□□ -1.2
CDX1-202ENST00000616154 A8MU10 97 aa7.58□□□□□ -1.2
CDX1-202ENST00000616154 KRTAP10-7P60409 375 aaPredicted RBP7.58□□□□□ -1.2
CDX1-202ENST00000616154 KRTAP10-12P60413 245 aa7.56□□□□□ -1.2
CDX1-202ENST00000616154 KRTAP12-1P59990 96 aa7.55□□□□□ -1.2
CDX1-202ENST00000616154 MIR22HGQ0VDD5 57 aa7.55□□□□□ -1.2
CDX1-202ENST00000616154 LCE3BQ5TA77 95 aa7.52□□□□□ -1.21
CDX1-202ENST00000616154 A6NED7 52 aa7.51□□□□□ -1.21
CDX1-202ENST00000616154 SPINT4Q6UDR6 99 aa7.44□□□□□ -1.22
CDX1-202ENST00000616154 CDC42SE1Q9NRR8 79 aa7.38□□□□□ -1.23
CDX1-202ENST00000616154 CAMK2N1Q7Z7J9 78 aa7.36□□□□□ -1.23
CDX1-202ENST00000616154 K7ERS5 55 aa7.25□□□□□ -1.25
CDX1-202ENST00000616154 GPR98Q8WXG9 6306 aa7.22□□□□□ -1.25
CDX1-202ENST00000616154 DSTQ03001 7570 aaKnown RBP7.18□□□□□ -1.26
CDX1-202ENST00000616154 C10orf95Q9H7T3 257 aa7.16□□□□□ -1.26
CDX1-202ENST00000616154 LCE5AQ5TCM9 118 aa7.14□□□□□ -1.27
CDX1-202ENST00000616154 KRTAP19-7Q3SYF9 63 aa7.12□□□□□ -1.27
CDX1-202ENST00000616154 BRK1Q8WUW1 75 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms