RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 SPANXA2-OT1Q8N9U9 137 aa7.18□□□□□ -1.26
CD48-203ENST00000613788 DMAC1Q96GE9 116 aa7.17□□□□□ -1.26
CD48-203ENST00000613788 S4R3F8 94 aa7.17□□□□□ -1.26
CD48-203ENST00000613788 SERP1Q9Y6X1 66 aa7.15□□□□□ -1.27
CD48-203ENST00000613788 ACYP2P14621 99 aa7.13□□□□□ -1.27
CD48-203ENST00000613788 LCA10Q71F78 164 aa7.12□□□□□ -1.27
CD48-203ENST00000613788 KRTAP10-6P60371 365 aaPredicted RBP7.08□□□□□ -1.28
CD48-203ENST00000613788 CSAG1Q6PB30 78 aa7.08□□□□□ -1.28
CD48-203ENST00000613788 LORP23490 312 aaPredicted RBP7.05□□□□□ -1.28
CD48-203ENST00000613788 KRTAP3-3Q9BYR6 98 aa7.05□□□□□ -1.28
CD48-203ENST00000613788 SMIM26A0A096LP01 95 aa7.02□□□□□ -1.29
CD48-203ENST00000613788 CHKB-CPT1BH3BT56 60 aa7□□□□□ -1.29
CD48-203ENST00000613788 KRTAP9-8Q9BYQ0 159 aa6.97□□□□□ -1.29
CD48-203ENST00000613788 SPTSSBQ8NFR3 76 aa6.96□□□□□ -1.29
CD48-203ENST00000613788 COA5Q86WW8 74 aa6.94□□□□□ -1.3
CD48-203ENST00000613788 MT2AP02795 61 aa6.91□□□□□ -1.3
CD48-203ENST00000613788 KRTAP10-10P60014 251 aa6.89□□□□□ -1.31
CD48-203ENST00000613788 H0YAA0 97 aa6.87□□□□□ -1.31
CD48-203ENST00000613788 MT1FP04733 61 aa6.86□□□□□ -1.31
CD48-203ENST00000613788 Q1T7F1 81 aa6.81□□□□□ -1.32
CD48-203ENST00000613788 ADM2Q7Z4H4 148 aa6.81□□□□□ -1.32
CD48-203ENST00000613788 LCE2DQ5TA82 110 aaPredicted RBP6.76□□□□□ -1.33
CD48-203ENST00000613788 V9GYY9 64 aa6.76□□□□□ -1.33
CD48-203ENST00000613788 KRTAP9-3Q9BYQ3 159 aa6.73□□□□□ -1.33
CD48-203ENST00000613788 CRIPTQ9P021 101 aa6.72□□□□□ -1.33
CD48-203ENST00000613788 KRTAP3-2Q9BYR7 98 aa6.71□□□□□ -1.34
CD48-203ENST00000613788 SEC61GP60059 68 aa6.7□□□□□ -1.34
CD48-203ENST00000613788 P0C880 135 aa6.69□□□□□ -1.34
CD48-203ENST00000613788 PRO0628Q9UI54 55 aa6.67□□□□□ -1.34
CD48-203ENST00000613788 KRTAP9-2Q9BYQ4 174 aa6.66□□□□□ -1.34
CD48-203ENST00000613788 SPRR2GQ9BYE4 73 aa6.62□□□□□ -1.35
CD48-203ENST00000613788 KRTAP19-1Q8IUB9 90 aa6.61□□□□□ -1.35
CD48-203ENST00000613788 R4GN34 69 aa6.61□□□□□ -1.35
CD48-203ENST00000613788 A0A1B0GU69 56 aa6.6□□□□□ -1.35
CD48-203ENST00000613788 LCE2BO14633 110 aa6.6□□□□□ -1.35
CD48-203ENST00000613788 Q5VV11 94 aa6.59□□□□□ -1.35
CD48-203ENST00000613788 LINC01558Q9Y6Z2 57 aa6.59□□□□□ -1.35
CD48-203ENST00000613788 M0QZ58 72 aa6.57□□□□□ -1.36
CD48-203ENST00000613788 PSPHP1O15172 72 aa6.57□□□□□ -1.36
CD48-203ENST00000613788 BRK1Q8WUW1 75 aa6.56□□□□□ -1.36
CD48-203ENST00000613788 PRR15LQ9BU68 103 aa6.55□□□□□ -1.36
CD48-203ENST00000613788 A0A1B0GU33 70 aa6.5□□□□□ -1.37
CD48-203ENST00000613788 KRTAP19-8Q3LI54 63 aa6.5□□□□□ -1.37
CD48-203ENST00000613788 USH2AO75445 5202 aa6.48□□□□□ -1.37
CD48-203ENST00000613788 FSIP2Q5CZC0 6907 aa6.45□□□□□ -1.38
CD48-203ENST00000613788 LINC01554Q52M75 96 aa6.45□□□□□ -1.38
CD48-203ENST00000613788 MT1BP07438 61 aa6.42□□□□□ -1.38
CD48-203ENST00000613788 KRTAP13-4Q3LI77 160 aa6.42□□□□□ -1.38
CD48-203ENST00000613788 SPATA8Q6RVD6 105 aa6.39□□□□□ -1.39
CD48-203ENST00000613788 CDC42SE1Q9NRR8 79 aa6.39□□□□□ -1.39
CD48-203ENST00000613788 A6NED7 52 aa6.38□□□□□ -1.39
CD48-203ENST00000613788 CRCT1Q9UGL9 99 aa6.38□□□□□ -1.39
CD48-203ENST00000613788 PLAC4Q8WY50 150 aa6.37□□□□□ -1.39
CD48-203ENST00000613788 A6NN06 94 aa6.35□□□□□ -1.39
CD48-203ENST00000613788 UQCR11O14957 56 aa6.34□□□□□ -1.39
CD48-203ENST00000613788 SSPOA2VEC9 5147 aa6.32□□□□□ -1.4
CD48-203ENST00000613788 A8MU10 97 aa6.32□□□□□ -1.4
CD48-203ENST00000613788 A0A0D9SG42 100 aa6.31□□□□□ -1.4
CD48-203ENST00000613788 KRTAP19-6Q3LI70 58 aa6.3□□□□□ -1.4
CD48-203ENST00000613788 KRTAP9-6A0A140TA67 174 aa6.28□□□□□ -1.4
CD48-203ENST00000613788 PMAIP1Q13794 54 aa6.25□□□□□ -1.41
CD48-203ENST00000613788 MIR22HGQ0VDD5 57 aa6.23□□□□□ -1.41
CD48-203ENST00000613788 SPINT4Q6UDR6 99 aa6.2□□□□□ -1.42
CD48-203ENST00000613788 KRTAP12-1P59990 96 aa6.19□□□□□ -1.42
CD48-203ENST00000613788 KRTAP10-5P60370 271 aa6.19□□□□□ -1.42
CD48-203ENST00000613788 PRO2289Q9P1D8 64 aa6.19□□□□□ -1.42
CD48-203ENST00000613788 CAMK2N1Q7Z7J9 78 aa6.15□□□□□ -1.42
CD48-203ENST00000613788 FCGBPQ9Y6R7 5405 aaPredicted RBP6.14□□□□□ -1.43
CD48-203ENST00000613788 KRTAP12-2P59991 146 aa6.14□□□□□ -1.43
CD48-203ENST00000613788 MT1XP80297 61 aa6.14□□□□□ -1.43
CD48-203ENST00000613788 KTN1-AS1Q86SY8 53 aa6.12□□□□□ -1.43
CD48-203ENST00000613788 K7ERS5 55 aa6.05□□□□□ -1.44
CD48-203ENST00000613788 MACF1Q9UPN3 7388 aaKnown RBP5.92□□□□□ -1.46
CD48-203ENST00000613788 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.9□□□□□ -1.46
CD48-203ENST00000613788 C10orf95Q9H7T3 257 aa5.87□□□□□ -1.47
CD48-203ENST00000613788 KRTAP10-7P60409 375 aaPredicted RBP5.86□□□□□ -1.47
CD48-203ENST00000613788 KRTAP10-12P60413 245 aa5.84□□□□□ -1.47
CD48-203ENST00000613788 TNP1P09430 55 aa5.8□□□□□ -1.48
CD48-203ENST00000613788 PRAC1Q96KF2 57 aa5.78□□□□□ -1.48
CD48-203ENST00000613788 SYNE2Q8WXH0 6885 aaKnown RBP5.76□□□□□ -1.49
CD48-203ENST00000613788 KRTAP4-8A0A0G2JLE6 195 aa5.72□□□□□ -1.49
CD48-203ENST00000613788 KRTAP4-8Q9BYQ9 185 aa5.72□□□□□ -1.49
CD48-203ENST00000613788 KMT2DO14686 5537 aa5.71□□□□□ -1.49
CD48-203ENST00000613788 KRTAP9-7A8MTY7 169 aa5.7□□□□□ -1.5
CD48-203ENST00000613788 ROMO1P60602 79 aa5.7□□□□□ -1.5
CD48-203ENST00000613788 KRTAP25-1Q3LHN0 102 aa5.7□□□□□ -1.5
CD48-203ENST00000613788 KRTAP8-1Q8IUC2 63 aa5.7□□□□□ -1.5
CD48-203ENST00000613788 KRTAP6-3Q3LI67 103 aa5.69□□□□□ -1.5
CD48-203ENST00000613788 KRTAP5-9P26371 169 aa5.61□□□□□ -1.51
CD48-203ENST00000613788 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
CD48-203ENST00000613788 SPRR2FQ96RM1 72 aa5.56□□□□□ -1.52
CD48-203ENST00000613788 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
CD48-203ENST00000613788 KRTAP19-5Q3LI72 72 aa5.47□□□□□ -1.53
CD48-203ENST00000613788 KRTAP19-7Q3SYF9 63 aa5.47□□□□□ -1.53
CD48-203ENST00000613788 MUC12Q9UKN1 5478 aa5.46□□□□□ -1.54
CD48-203ENST00000613788 PP632Q6XCG6 107 aa5.44□□□□□ -1.54
CD48-203ENST00000613788 MT1EP04732 61 aa5.41□□□□□ -1.54
CD48-203ENST00000613788 MDN1Q9NU22 5596 aa5.39□□□□□ -1.55
CD48-203ENST00000613788 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
CD48-203ENST00000613788 SPRR2EP22531 72 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms