RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 HCG22E2RYF7 251 aa3.06□□□□□ -1.92
CUX1-220ENST00000607092 NDUFC1O43677 76 aa3.06□□□□□ -1.92
CUX1-220ENST00000607092 LCE1DQ5T752 114 aa3.06□□□□□ -1.92
CUX1-220ENST00000607092 OCR1Q9BZK8 76 aa3.06□□□□□ -1.92
CUX1-220ENST00000607092 A0A1B0GVX0 72 aa3.05□□□□□ -1.92
CUX1-220ENST00000607092 K7EQZ3 153 aa3.05□□□□□ -1.92
CUX1-220ENST00000607092 SPINK7P58062 85 aa3.05□□□□□ -1.92
CUX1-220ENST00000607092 KLKP1Q107X0 134 aa3.05□□□□□ -1.92
CUX1-220ENST00000607092 C5orf47Q569G3 176 aa3.05□□□□□ -1.92
CUX1-220ENST00000607092 Q8N9L7 120 aa3.05□□□□□ -1.92
CUX1-220ENST00000607092 ZCCHC13Q8WW36 166 aaKnown RBP3.05□□□□□ -1.92
CUX1-220ENST00000607092 KRTAP4-8A0A0G2JLE6 195 aa3.03□□□□□ -1.92
CUX1-220ENST00000607092 H3BPC8 53 aa3.03□□□□□ -1.92
CUX1-220ENST00000607092 DEFB116Q30KQ4 102 aa3.03□□□□□ -1.92
CUX1-220ENST00000607092 CASC2Q6XLA1 102 aa3.03□□□□□ -1.92
CUX1-220ENST00000607092 Q8N9P0 234 aaPredicted RBP3.03□□□□□ -1.92
CUX1-220ENST00000607092 IGKV2D-30A0A075B6S6 120 aa3.02□□□□□ -1.93
CUX1-220ENST00000607092 TMEM258P61165 79 aa3.02□□□□□ -1.93
CUX1-220ENST00000607092 C20orf197Q8N268 126 aa3.02□□□□□ -1.93
CUX1-220ENST00000607092 TMEM254Q8TBM7 123 aa3.02□□□□□ -1.93
CUX1-220ENST00000607092 TP53AIP1Q9HCN2 124 aa3.02□□□□□ -1.93
CUX1-220ENST00000607092 hDV103S1A0JD37 113 aa3.01□□□□□ -1.93
CUX1-220ENST00000607092 RPS28P62857 69 aaKnown RBP3.01□□□□□ -1.93
CUX1-220ENST00000607092 WFDC13Q8IUB5 93 aa3.01□□□□□ -1.93
CUX1-220ENST00000607092 C8orf17Q9NRJ1 99 aa3.01□□□□□ -1.93
CUX1-220ENST00000607092 MMP24-AS1A0A0U1RRL7 71 aa3□□□□□ -1.93
CUX1-220ENST00000607092 MP68P56378 58 aa3□□□□□ -1.93
CUX1-220ENST00000607092 MUC12Q9UKN1 5478 aa2.98□□□□□ -1.93
CUX1-220ENST00000607092 H7BZZ5 65 aa2.98□□□□□ -1.93
CUX1-220ENST00000607092 ATP5EP56381 51 aaPredicted RBP2.98□□□□□ -1.93
CUX1-220ENST00000607092 H1FX-AS1Q4G0G2 97 aa2.98□□□□□ -1.93
CUX1-220ENST00000607092 MRPL34Q9BQ48 92 aaKnown RBP2.98□□□□□ -1.93
CUX1-220ENST00000607092 SNURFQ9Y675 71 aa2.97□□□□□ -1.93
CUX1-220ENST00000607092 MDN1Q9NU22 5596 aa2.96□□□□□ -1.93
CUX1-220ENST00000607092 CYSTM1Q9H1C7 97 aa2.96□□□□□ -1.94
CUX1-220ENST00000607092 TRAV22A0A0B4J277 110 aa2.95□□□□□ -1.94
CUX1-220ENST00000607092 H0Y9P7 68 aa2.95□□□□□ -1.94
CUX1-220ENST00000607092 A6NN06 94 aa2.94□□□□□ -1.94
CUX1-220ENST00000607092 SPANXA2-OT1Q8N9U9 137 aa2.94□□□□□ -1.94
CUX1-220ENST00000607092 C1orf64Q8NEQ6 169 aa2.94□□□□□ -1.94
CUX1-220ENST00000607092 LINC00208Q96KT6 92 aa2.94□□□□□ -1.94
CUX1-220ENST00000607092 NDUFS5O43920 106 aa2.93□□□□□ -1.94
CUX1-220ENST00000607092 SERP1Q9Y6X1 66 aa2.93□□□□□ -1.94
CUX1-220ENST00000607092 KMT2DO14686 5537 aa2.93□□□□□ -1.94
CUX1-220ENST00000607092 LOC101927531A0A1B0GV80 90 aa2.92□□□□□ -1.94
CUX1-220ENST00000607092 KRTAP20-1Q3LI63 56 aa2.92□□□□□ -1.94
CUX1-220ENST00000607092 KRTAP4-9Q9BYQ8 210 aa2.92□□□□□ -1.94
CUX1-220ENST00000607092 CYP4F30PQ9H0H9 118 aa2.92□□□□□ -1.94
CUX1-220ENST00000607092 C7orf65Q6ZTY9 151 aa2.91□□□□□ -1.94
CUX1-220ENST00000607092 Q5VV11 94 aa2.9□□□□□ -1.95
CUX1-220ENST00000607092 KRTAP4-7Q9BYR0 210 aa2.9□□□□□ -1.95
CUX1-220ENST00000607092 SMIM26A0A096LP01 95 aa2.88□□□□□ -1.95
CUX1-220ENST00000607092 Q5W150 140 aa2.88□□□□□ -1.95
CUX1-220ENST00000607092 KRTAP4-11Q9BYQ6 195 aa2.88□□□□□ -1.95
CUX1-220ENST00000607092 KRTAP5-9P26371 169 aa2.86□□□□□ -1.95
CUX1-220ENST00000607092 CSAG1Q6PB30 78 aa2.86□□□□□ -1.95
CUX1-220ENST00000607092 KRTAP10-5P60370 271 aa2.84□□□□□ -1.95
CUX1-220ENST00000607092 KRTAP19-8Q3LI54 63 aa2.84□□□□□ -1.95
CUX1-220ENST00000607092 SPRR2GQ9BYE4 73 aa2.84□□□□□ -1.95
CUX1-220ENST00000607092 KRTAP2-3P0C7H8 128 aa2.83□□□□□ -1.96
CUX1-220ENST00000607092 ACYP2P14621 99 aa2.83□□□□□ -1.96
CUX1-220ENST00000607092 KRTAP2-4Q9BYR9 128 aa2.83□□□□□ -1.96
CUX1-220ENST00000607092 CRIPTQ9P021 101 aa2.83□□□□□ -1.96
CUX1-220ENST00000607092 MT1BP07438 61 aa2.82□□□□□ -1.96
CUX1-220ENST00000607092 C4orf26Q17RF5 130 aa2.82□□□□□ -1.96
CUX1-220ENST00000607092 S4R3F8 94 aa2.82□□□□□ -1.96
CUX1-220ENST00000607092 V9GYY9 64 aa2.82□□□□□ -1.96
CUX1-220ENST00000607092 Q1T7F1 81 aa2.81□□□□□ -1.96
CUX1-220ENST00000607092 LCE1AQ5T7P2 110 aa2.81□□□□□ -1.96
CUX1-220ENST00000607092 A8MUN3 132 aa2.8□□□□□ -1.96
CUX1-220ENST00000607092 DMAC1Q96GE9 116 aa2.8□□□□□ -1.96
CUX1-220ENST00000607092 SEC61GP60059 68 aa2.79□□□□□ -1.96
CUX1-220ENST00000607092 COA5Q86WW8 74 aa2.79□□□□□ -1.96
CUX1-220ENST00000607092 NDUFAF8A1L188 74 aa2.78□□□□□ -1.96
CUX1-220ENST00000607092 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
CUX1-220ENST00000607092 PRO2289Q9P1D8 64 aa2.77□□□□□ -1.97
CUX1-220ENST00000607092 LCA10Q71F78 164 aa2.76□□□□□ -1.97
CUX1-220ENST00000607092 LINC01558Q9Y6Z2 57 aa2.75□□□□□ -1.97
CUX1-220ENST00000607092 CHKB-CPT1BH3BT56 60 aa2.74□□□□□ -1.97
CUX1-220ENST00000607092 SPTSSBQ8NFR3 76 aa2.74□□□□□ -1.97
CUX1-220ENST00000607092 GPR98Q8WXG9 6306 aa2.73□□□□□ -1.97
CUX1-220ENST00000607092 SPRR2EP22531 72 aa2.73□□□□□ -1.97
CUX1-220ENST00000607092 SPRR2BP35325 72 aa2.73□□□□□ -1.97
CUX1-220ENST00000607092 SPRR2AP35326 72 aa2.73□□□□□ -1.97
CUX1-220ENST00000607092 SPRR2FQ96RM1 72 aa2.73□□□□□ -1.97
CUX1-220ENST00000607092 KRTAP2-2Q9BYT5 123 aa2.72□□□□□ -1.97
CUX1-220ENST00000607092 KRTAP2-1Q9BYU5 128 aa2.72□□□□□ -1.97
CUX1-220ENST00000607092 H0YAA0 97 aa2.71□□□□□ -1.98
CUX1-220ENST00000607092 PRR15LQ9BU68 103 aa2.7□□□□□ -1.98
CUX1-220ENST00000607092 PLAC4Q8WY50 150 aa2.69□□□□□ -1.98
CUX1-220ENST00000607092 PSPHP1O15172 72 aa2.68□□□□□ -1.98
CUX1-220ENST00000607092 KRTAP8-1Q8IUC2 63 aa2.68□□□□□ -1.98
CUX1-220ENST00000607092 A0A1B0GU69 56 aa2.66□□□□□ -1.98
CUX1-220ENST00000607092 KRTAP12-2P59991 146 aa2.66□□□□□ -1.98
CUX1-220ENST00000607092 PRO0628Q9UI54 55 aa2.66□□□□□ -1.98
CUX1-220ENST00000607092 SPRR2DP22532 72 aa2.64□□□□□ -1.99
CUX1-220ENST00000607092 MT3P25713 68 aa2.63□□□□□ -1.99
CUX1-220ENST00000607092 BRK1Q8WUW1 75 aa2.63□□□□□ -1.99
CUX1-220ENST00000607092 A6NED7 52 aa2.62□□□□□ -1.99
CUX1-220ENST00000607092 UQCR11O14957 56 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms