RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 KRTAP19-2Q3LHN2 52 aa8.91□□□□□ -0.98
VRK3-225ENST00000601912 LCA10Q71F78 164 aa8.91□□□□□ -0.98
VRK3-225ENST00000601912 RNF213Q63HN8 5207 aa8.85□□□□□ -0.99
VRK3-225ENST00000601912 KRTAP3-3Q9BYR6 98 aa8.83□□□□□ -1
VRK3-225ENST00000601912 V9GYY9 64 aa8.81□□□□□ -1
VRK3-225ENST00000601912 CSAG1Q6PB30 78 aa8.78□□□□□ -1
VRK3-225ENST00000601912 Q1T7F1 81 aa8.78□□□□□ -1
VRK3-225ENST00000601912 LCE2CQ5TA81 110 aa8.75□□□□□ -1.01
VRK3-225ENST00000601912 LINC01558Q9Y6Z2 57 aa8.75□□□□□ -1.01
VRK3-225ENST00000601912 FLGP20930 4061 aaPredicted RBP8.69□□□□□ -1.02
VRK3-225ENST00000601912 SEC61GP60059 68 aa8.69□□□□□ -1.02
VRK3-225ENST00000601912 A0A1B0GU69 56 aa8.67□□□□□ -1.02
VRK3-225ENST00000601912 PRR15LQ9BU68 103 aa8.66□□□□□ -1.02
VRK3-225ENST00000601912 PSPHP1O15172 72 aa8.62□□□□□ -1.03
VRK3-225ENST00000601912 MT1HP80294 61 aa8.61□□□□□ -1.03
VRK3-225ENST00000601912 M0R2T5 61 aa8.59□□□□□ -1.03
VRK3-225ENST00000601912 FAT4Q6V0I7 4981 aa8.57□□□□□ -1.04
VRK3-225ENST00000601912 H0YAA0 97 aa8.56□□□□□ -1.04
VRK3-225ENST00000601912 ADM2Q7Z4H4 148 aa8.53□□□□□ -1.04
VRK3-225ENST00000601912 Q5VV11 94 aa8.53□□□□□ -1.04
VRK3-225ENST00000601912 KRTAP3-2Q9BYR7 98 aa8.49□□□□□ -1.05
VRK3-225ENST00000601912 KRTAP10-6P60371 365 aaPredicted RBP8.47□□□□□ -1.05
VRK3-225ENST00000601912 P0C880 135 aa8.44□□□□□ -1.06
VRK3-225ENST00000601912 A0A1B0GU33 70 aa8.43□□□□□ -1.06
VRK3-225ENST00000601912 UQCR11O14957 56 aa8.4□□□□□ -1.07
VRK3-225ENST00000601912 A6NED7 52 aa8.39□□□□□ -1.07
VRK3-225ENST00000601912 LCE2AQ5TA79 106 aaPredicted RBP8.33□□□□□ -1.08
VRK3-225ENST00000601912 M0QZ58 72 aa8.28□□□□□ -1.08
VRK3-225ENST00000601912 MIR22HGQ0VDD5 57 aa8.28□□□□□ -1.08
VRK3-225ENST00000601912 KRTAP9-8Q9BYQ0 159 aa8.27□□□□□ -1.09
VRK3-225ENST00000601912 R4GN34 69 aa8.27□□□□□ -1.09
VRK3-225ENST00000601912 SPATA8Q6RVD6 105 aa8.26□□□□□ -1.09
VRK3-225ENST00000601912 LORP23490 312 aaPredicted RBP8.25□□□□□ -1.09
VRK3-225ENST00000601912 CRIPTQ9P021 101 aa8.25□□□□□ -1.09
VRK3-225ENST00000601912 MT2AP02795 61 aa8.24□□□□□ -1.09
VRK3-225ENST00000601912 KRTAP10-10P60014 251 aa8.22□□□□□ -1.09
VRK3-225ENST00000601912 KRTAP13-4Q3LI77 160 aa8.21□□□□□ -1.09
VRK3-225ENST00000601912 BRK1Q8WUW1 75 aa8.21□□□□□ -1.09
VRK3-225ENST00000601912 CDC42SE1Q9NRR8 79 aa8.21□□□□□ -1.09
VRK3-225ENST00000601912 MT1FP04733 61 aa8.18□□□□□ -1.1
VRK3-225ENST00000601912 SVIPQ8NHG7 77 aa8.12□□□□□ -1.11
VRK3-225ENST00000601912 A0A0D9SG42 100 aa8.11□□□□□ -1.11
VRK3-225ENST00000601912 A8MU10 97 aa8.11□□□□□ -1.11
VRK3-225ENST00000601912 LINC01554Q52M75 96 aa8.09□□□□□ -1.11
VRK3-225ENST00000601912 SPRR2GQ9BYE4 73 aa8.05□□□□□ -1.12
VRK3-225ENST00000601912 PRO0628Q9UI54 55 aa8.05□□□□□ -1.12
VRK3-225ENST00000601912 KRTAP19-1Q8IUB9 90 aa8.01□□□□□ -1.13
VRK3-225ENST00000601912 K7ERS5 55 aa7.98□□□□□ -1.13
VRK3-225ENST00000601912 KRTAP9-3Q9BYQ3 159 aa7.98□□□□□ -1.13
VRK3-225ENST00000601912 A6NN06 94 aa7.95□□□□□ -1.14
VRK3-225ENST00000601912 SPINT4Q6UDR6 99 aa7.95□□□□□ -1.14
VRK3-225ENST00000601912 KRTAP12-1P59990 96 aa7.92□□□□□ -1.14
VRK3-225ENST00000601912 KRTAP12-2P59991 146 aa7.9□□□□□ -1.14
VRK3-225ENST00000601912 KRTAP19-8Q3LI54 63 aa7.84□□□□□ -1.15
VRK3-225ENST00000601912 PLAC4Q8WY50 150 aa7.83□□□□□ -1.16
VRK3-225ENST00000601912 PMAIP1Q13794 54 aa7.78□□□□□ -1.16
VRK3-225ENST00000601912 LCE2BO14633 110 aa7.76□□□□□ -1.17
VRK3-225ENST00000601912 CAMK2N1Q7Z7J9 78 aa7.74□□□□□ -1.17
VRK3-225ENST00000601912 MT1BP07438 61 aa7.73□□□□□ -1.17
VRK3-225ENST00000601912 LCE2DQ5TA82 110 aaPredicted RBP7.63□□□□□ -1.19
VRK3-225ENST00000601912 ROMO1P60602 79 aa7.58□□□□□ -1.2
VRK3-225ENST00000601912 C10orf95Q9H7T3 257 aa7.5□□□□□ -1.21
VRK3-225ENST00000601912 USH2AO75445 5202 aa7.5□□□□□ -1.21
VRK3-225ENST00000601912 PRO2289Q9P1D8 64 aa7.48□□□□□ -1.21
VRK3-225ENST00000601912 MT1XP80297 61 aa7.46□□□□□ -1.22
VRK3-225ENST00000601912 KRTAP10-5P60370 271 aa7.44□□□□□ -1.22
VRK3-225ENST00000601912 KTN1-AS1Q86SY8 53 aa7.41□□□□□ -1.22
VRK3-225ENST00000601912 KRTAP9-2Q9BYQ4 174 aa7.37□□□□□ -1.23
VRK3-225ENST00000601912 TNP1P09430 55 aa7.35□□□□□ -1.23
VRK3-225ENST00000601912 KRTAP25-1Q3LHN0 102 aa7.34□□□□□ -1.23
VRK3-225ENST00000601912 KRTAP19-6Q3LI70 58 aa7.33□□□□□ -1.24
VRK3-225ENST00000601912 FSIP2Q5CZC0 6907 aa7.3□□□□□ -1.24
VRK3-225ENST00000601912 SSPOA2VEC9 5147 aa7.27□□□□□ -1.25
VRK3-225ENST00000601912 PRAC1Q96KF2 57 aa7.25□□□□□ -1.25
VRK3-225ENST00000601912 KRTAP10-7P60409 375 aaPredicted RBP7.16□□□□□ -1.26
VRK3-225ENST00000601912 CRCT1Q9UGL9 99 aa7.1□□□□□ -1.27
VRK3-225ENST00000601912 KRTAP23-1A1A580 65 aa7.09□□□□□ -1.27
VRK3-225ENST00000601912 KRTAP10-12P60413 245 aa7.09□□□□□ -1.27
VRK3-225ENST00000601912 PP632Q6XCG6 107 aa7.09□□□□□ -1.27
VRK3-225ENST00000601912 LCE3AQ5TA76 89 aa7□□□□□ -1.29
VRK3-225ENST00000601912 FCGBPQ9Y6R7 5405 aaPredicted RBP7□□□□□ -1.29
VRK3-225ENST00000601912 KRTAP4-8A0A0G2JLE6 195 aa6.89□□□□□ -1.31
VRK3-225ENST00000601912 KRTAP4-8Q9BYQ9 185 aa6.89□□□□□ -1.31
VRK3-225ENST00000601912 KRTAP8-1Q8IUC2 63 aa6.86□□□□□ -1.31
VRK3-225ENST00000601912 KRTAP9-6A0A140TA67 174 aa6.83□□□□□ -1.32
VRK3-225ENST00000601912 KMT2DO14686 5537 aa6.8□□□□□ -1.32
VRK3-225ENST00000601912 KRTAP12-3P60328 96 aa6.75□□□□□ -1.33
VRK3-225ENST00000601912 KRTAP19-5Q3LI72 72 aa6.73□□□□□ -1.33
VRK3-225ENST00000601912 MACF1Q9UPN3 7388 aaKnown RBP6.7□□□□□ -1.34
VRK3-225ENST00000601912 KRTAP19-7Q3SYF9 63 aa6.65□□□□□ -1.35
VRK3-225ENST00000601912 KRTAP15-1Q3LI76 137 aa6.59□□□□□ -1.35
VRK3-225ENST00000601912 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.56□□□□□ -1.36
VRK3-225ENST00000601912 MT1EP04732 61 aa6.55□□□□□ -1.36
VRK3-225ENST00000601912 SPRR2FQ96RM1 72 aa6.52□□□□□ -1.37
VRK3-225ENST00000601912 SYNE2Q8WXH0 6885 aaKnown RBP6.5□□□□□ -1.37
VRK3-225ENST00000601912 KRTAP5-9P26371 169 aa6.45□□□□□ -1.38
VRK3-225ENST00000601912 MT1LQ93083 61 aa6.41□□□□□ -1.38
VRK3-225ENST00000601912 KRTAP6-3Q3LI67 103 aa6.4□□□□□ -1.38
VRK3-225ENST00000601912 KRTAP19-4Q3LI73 84 aa6.38□□□□□ -1.39
VRK3-225ENST00000601912 KRTAP19-3Q7Z4W3 81 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms