RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 S4R3F8 94 aa8.66□□□□□ -1.02
PNKP-213ENST00000599543 MP68P56378 58 aa8.64□□□□□ -1.03
PNKP-213ENST00000599543 KLKP1Q107X0 134 aa8.64□□□□□ -1.03
PNKP-213ENST00000599543 LCA10Q71F78 164 aa8.62□□□□□ -1.03
PNKP-213ENST00000599543 IMUPQ9GZP8 106 aa8.62□□□□□ -1.03
PNKP-213ENST00000599543 FAM236AA0A1B0GUQ0 79 aa8.6□□□□□ -1.03
PNKP-213ENST00000599543 FAM236BA0A1B0GV22 79 aa8.6□□□□□ -1.03
PNKP-213ENST00000599543 KRTAP6-3Q3LI67 103 aa8.58□□□□□ -1.04
PNKP-213ENST00000599543 KRTAP3-3Q9BYR6 98 aa8.52□□□□□ -1.05
PNKP-213ENST00000599543 CSAG1Q6PB30 78 aa8.51□□□□□ -1.05
PNKP-213ENST00000599543 H3BPC8 53 aa8.49□□□□□ -1.05
PNKP-213ENST00000599543 TRAV7A0A075B6U4 112 aa8.47□□□□□ -1.05
PNKP-213ENST00000599543 A6NN06 94 aa8.46□□□□□ -1.06
PNKP-213ENST00000599543 Q5VV11 94 aa8.45□□□□□ -1.06
PNKP-213ENST00000599543 MT1BP07438 61 aa8.42□□□□□ -1.06
PNKP-213ENST00000599543 SMIM20Q8N5G0 67 aa8.42□□□□□ -1.06
PNKP-213ENST00000599543 SPRR2GQ9BYE4 73 aa8.42□□□□□ -1.06
PNKP-213ENST00000599543 A8MUN3 132 aa8.4□□□□□ -1.06
PNKP-213ENST00000599543 KRTAP19-8Q3LI54 63 aa8.39□□□□□ -1.07
PNKP-213ENST00000599543 NEBP20929 6669 aa8.39□□□□□ -1.07
PNKP-213ENST00000599543 NDUFC1O43677 76 aa8.37□□□□□ -1.07
PNKP-213ENST00000599543 SNURFQ9Y675 71 aa8.37□□□□□ -1.07
PNKP-213ENST00000599543 DMAC1Q96GE9 116 aa8.33□□□□□ -1.08
PNKP-213ENST00000599543 MUC12Q9UKN1 5478 aa8.3□□□□□ -1.08
PNKP-213ENST00000599543 C20orf197Q8N268 126 aa8.29□□□□□ -1.08
PNKP-213ENST00000599543 SERP2Q8N6R1 65 aa8.29□□□□□ -1.08
PNKP-213ENST00000599543 KRTAP10-5P60370 271 aa8.28□□□□□ -1.08
PNKP-213ENST00000599543 CRIPTQ9P021 101 aa8.24□□□□□ -1.09
PNKP-213ENST00000599543 ADM2Q7Z4H4 148 aa8.21□□□□□ -1.1
PNKP-213ENST00000599543 ACYP2P14621 99 aa8.17□□□□□ -1.1
PNKP-213ENST00000599543 H0YAA0 97 aa8.15□□□□□ -1.1
PNKP-213ENST00000599543 COX7CP15954 63 aa8.12□□□□□ -1.11
PNKP-213ENST00000599543 KRTAP5-9P26371 169 aa8.11□□□□□ -1.11
PNKP-213ENST00000599543 P0C880 135 aa8.08□□□□□ -1.12
PNKP-213ENST00000599543 CHKB-CPT1BH3BT56 60 aa8.07□□□□□ -1.12
PNKP-213ENST00000599543 SPANXA2-OT1Q8N9U9 137 aa8.07□□□□□ -1.12
PNKP-213ENST00000599543 KMT2DO14686 5537 aa8.07□□□□□ -1.12
PNKP-213ENST00000599543 KRTAP20-1Q3LI63 56 aa8.06□□□□□ -1.12
PNKP-213ENST00000599543 CYSTM1Q9H1C7 97 aa8.06□□□□□ -1.12
PNKP-213ENST00000599543 MDN1Q9NU22 5596 aa8.03□□□□□ -1.12
PNKP-213ENST00000599543 KRTAP3-2Q9BYR7 98 aa8.03□□□□□ -1.12
PNKP-213ENST00000599543 ANAPC13Q9BS18 74 aa8.01□□□□□ -1.13
PNKP-213ENST00000599543 SPTSSBQ8NFR3 76 aa7.98□□□□□ -1.13
PNKP-213ENST00000599543 PRO2289Q9P1D8 64 aa7.96□□□□□ -1.14
PNKP-213ENST00000599543 H7BZZ5 65 aa7.95□□□□□ -1.14
PNKP-213ENST00000599543 COA5Q86WW8 74 aa7.93□□□□□ -1.14
PNKP-213ENST00000599543 R4GN34 69 aa7.93□□□□□ -1.14
PNKP-213ENST00000599543 M0QZ58 72 aa7.92□□□□□ -1.14
PNKP-213ENST00000599543 CCDC179H3BU77 68 aa7.9□□□□□ -1.14
PNKP-213ENST00000599543 PLAC4Q8WY50 150 aa7.88□□□□□ -1.15
PNKP-213ENST00000599543 MT1XP80297 61 aa7.86□□□□□ -1.15
PNKP-213ENST00000599543 SPRR2FQ96RM1 72 aa7.86□□□□□ -1.15
PNKP-213ENST00000599543 LINC01554Q52M75 96 aa7.84□□□□□ -1.15
PNKP-213ENST00000599543 SPRR2EP22531 72 aa7.79□□□□□ -1.16
PNKP-213ENST00000599543 SPRR2BP35325 72 aa7.79□□□□□ -1.16
PNKP-213ENST00000599543 SPRR2AP35326 72 aa7.79□□□□□ -1.16
PNKP-213ENST00000599543 KRTAP2-3P0C7H8 128 aa7.78□□□□□ -1.16
PNKP-213ENST00000599543 KRTAP2-4Q9BYR9 128 aa7.78□□□□□ -1.16
PNKP-213ENST00000599543 KRTAP8-1Q8IUC2 63 aa7.77□□□□□ -1.17
PNKP-213ENST00000599543 KRTAP12-2P59991 146 aa7.72□□□□□ -1.17
PNKP-213ENST00000599543 KRTAP13-4Q3LI77 160 aa7.68□□□□□ -1.18
PNKP-213ENST00000599543 LCE1AQ5T7P2 110 aa7.63□□□□□ -1.19
PNKP-213ENST00000599543 SEC61GP60059 68 aa7.61□□□□□ -1.19
PNKP-213ENST00000599543 SERP1Q9Y6X1 66 aa7.6□□□□□ -1.19
PNKP-213ENST00000599543 KRTAP4-8A0A0G2JLE6 195 aa7.58□□□□□ -1.2
PNKP-213ENST00000599543 KRTAP4-8Q9BYQ9 185 aa7.58□□□□□ -1.2
PNKP-213ENST00000599543 ATP5EP56381 51 aaPredicted RBP7.56□□□□□ -1.2
PNKP-213ENST00000599543 SPRR2DP22532 72 aa7.53□□□□□ -1.2
PNKP-213ENST00000599543 SPATA8Q6RVD6 105 aa7.52□□□□□ -1.21
PNKP-213ENST00000599543 KRTAP2-2Q9BYT5 123 aa7.52□□□□□ -1.21
PNKP-213ENST00000599543 KRTAP2-1Q9BYU5 128 aa7.52□□□□□ -1.21
PNKP-213ENST00000599543 KRTAP10-7P60409 375 aaPredicted RBP7.51□□□□□ -1.21
PNKP-213ENST00000599543 A0A0D9SG42 100 aa7.5□□□□□ -1.21
PNKP-213ENST00000599543 TMEM258P61165 79 aa7.5□□□□□ -1.21
PNKP-213ENST00000599543 A0A1B0GU33 70 aa7.49□□□□□ -1.21
PNKP-213ENST00000599543 A0A1B0GU69 56 aa7.49□□□□□ -1.21
PNKP-213ENST00000599543 KRTAP10-12P60413 245 aa7.47□□□□□ -1.21
PNKP-213ENST00000599543 CAMK2N1Q7Z7J9 78 aa7.36□□□□□ -1.23
PNKP-213ENST00000599543 SPINT4Q6UDR6 99 aa7.34□□□□□ -1.23
PNKP-213ENST00000599543 LCE3BQ5TA77 95 aa7.33□□□□□ -1.24
PNKP-213ENST00000599543 A8MU10 97 aa7.32□□□□□ -1.24
PNKP-213ENST00000599543 LINC01558Q9Y6Z2 57 aa7.32□□□□□ -1.24
PNKP-213ENST00000599543 KRTAP12-1P59990 96 aa7.29□□□□□ -1.24
PNKP-213ENST00000599543 PRR15LQ9BU68 103 aa7.29□□□□□ -1.24
PNKP-213ENST00000599543 SMIM26A0A096LP01 95 aa7.24□□□□□ -1.25
PNKP-213ENST00000599543 PCP4P48539 62 aa7.16□□□□□ -1.26
PNKP-213ENST00000599543 DSTQ03001 7570 aaKnown RBP7.08□□□□□ -1.28
PNKP-213ENST00000599543 UQCR11O14957 56 aa7.07□□□□□ -1.28
PNKP-213ENST00000599543 PSPHP1O15172 72 aa7.07□□□□□ -1.28
PNKP-213ENST00000599543 KRTAP19-7Q3SYF9 63 aa7.02□□□□□ -1.29
PNKP-213ENST00000599543 Q1T7F1 81 aa7.01□□□□□ -1.29
PNKP-213ENST00000599543 LCE5AQ5TCM9 118 aa7.01□□□□□ -1.29
PNKP-213ENST00000599543 MT1EP04732 61 aa6.99□□□□□ -1.29
PNKP-213ENST00000599543 V9GYY9 64 aa6.99□□□□□ -1.29
PNKP-213ENST00000599543 MIR22HGQ0VDD5 57 aa6.98□□□□□ -1.29
PNKP-213ENST00000599543 KRTAP19-3Q7Z4W3 81 aa6.97□□□□□ -1.29
PNKP-213ENST00000599543 C10orf95Q9H7T3 257 aa6.96□□□□□ -1.3
PNKP-213ENST00000599543 GPR98Q8WXG9 6306 aa6.92□□□□□ -1.3
PNKP-213ENST00000599543 KRTAP4-9Q9BYQ8 210 aa6.86□□□□□ -1.31
PNKP-213ENST00000599543 RPS28P62857 69 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms