RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 S4R3F8 94 aa8.69□□□□□ -1.02
LIG1-216ENST00000598938 KRTAP19-1Q8IUB9 90 aa8.67□□□□□ -1.02
LIG1-216ENST00000598938 LCA10Q71F78 164 aa8.65□□□□□ -1.02
LIG1-216ENST00000598938 A8MUN3 132 aa8.63□□□□□ -1.03
LIG1-216ENST00000598938 MT1FP04733 61 aa8.63□□□□□ -1.03
LIG1-216ENST00000598938 SERP2Q8N6R1 65 aa8.61□□□□□ -1.03
LIG1-216ENST00000598938 LCE2BO14633 110 aa8.6□□□□□ -1.03
LIG1-216ENST00000598938 KRTAP10-10P60014 251 aa8.58□□□□□ -1.04
LIG1-216ENST00000598938 KRTAP3-3Q9BYR6 98 aa8.58□□□□□ -1.04
LIG1-216ENST00000598938 CSAG1Q6PB30 78 aa8.57□□□□□ -1.04
LIG1-216ENST00000598938 MACF1Q9UPN3 7388 aaKnown RBP8.55□□□□□ -1.04
LIG1-216ENST00000598938 KRTAP9-3Q9BYQ3 159 aa8.55□□□□□ -1.04
LIG1-216ENST00000598938 SYNE2Q8WXH0 6885 aaKnown RBP8.55□□□□□ -1.04
LIG1-216ENST00000598938 DMAC1Q96GE9 116 aa8.53□□□□□ -1.04
LIG1-216ENST00000598938 SNURFQ9Y675 71 aa8.53□□□□□ -1.04
LIG1-216ENST00000598938 C20orf197Q8N268 126 aa8.51□□□□□ -1.05
LIG1-216ENST00000598938 NDUFC1O43677 76 aa8.47□□□□□ -1.05
LIG1-216ENST00000598938 COX7CP15954 63 aa8.45□□□□□ -1.06
LIG1-216ENST00000598938 KRTAP19-6Q3LI70 58 aa8.44□□□□□ -1.06
LIG1-216ENST00000598938 SPANXA2-OT1Q8N9U9 137 aa8.38□□□□□ -1.07
LIG1-216ENST00000598938 ACYP2P14621 99 aa8.37□□□□□ -1.07
LIG1-216ENST00000598938 KRTAP6-3Q3LI67 103 aa8.35□□□□□ -1.07
LIG1-216ENST00000598938 ANAPC13Q9BS18 74 aa8.34□□□□□ -1.07
LIG1-216ENST00000598938 H0YAA0 97 aa8.33□□□□□ -1.08
LIG1-216ENST00000598938 CYSTM1Q9H1C7 97 aa8.27□□□□□ -1.09
LIG1-216ENST00000598938 H7BZZ5 65 aa8.24□□□□□ -1.09
LIG1-216ENST00000598938 ADM2Q7Z4H4 148 aa8.22□□□□□ -1.09
LIG1-216ENST00000598938 CHKB-CPT1BH3BT56 60 aa8.2□□□□□ -1.1
LIG1-216ENST00000598938 SPTSSBQ8NFR3 76 aa8.19□□□□□ -1.1
LIG1-216ENST00000598938 SPRR2GQ9BYE4 73 aa8.19□□□□□ -1.1
LIG1-216ENST00000598938 CRIPTQ9P021 101 aa8.19□□□□□ -1.1
LIG1-216ENST00000598938 CCDC179H3BU77 68 aa8.17□□□□□ -1.1
LIG1-216ENST00000598938 KRTAP3-2Q9BYR7 98 aa8.12□□□□□ -1.11
LIG1-216ENST00000598938 COA5Q86WW8 74 aa8.11□□□□□ -1.11
LIG1-216ENST00000598938 P0C880 135 aa8.1□□□□□ -1.11
LIG1-216ENST00000598938 KRTAP19-8Q3LI54 63 aa8.09□□□□□ -1.11
LIG1-216ENST00000598938 NEBP20929 6669 aa8.08□□□□□ -1.12
LIG1-216ENST00000598938 MT1BP07438 61 aa8.03□□□□□ -1.12
LIG1-216ENST00000598938 Q5VV11 94 aa8.03□□□□□ -1.12
LIG1-216ENST00000598938 R4GN34 69 aa7.97□□□□□ -1.13
LIG1-216ENST00000598938 ATP5EP56381 51 aaPredicted RBP7.96□□□□□ -1.14
LIG1-216ENST00000598938 KRTAP20-1Q3LI63 56 aa7.95□□□□□ -1.14
LIG1-216ENST00000598938 M0QZ58 72 aa7.93□□□□□ -1.14
LIG1-216ENST00000598938 MUC12Q9UKN1 5478 aa7.92□□□□□ -1.14
LIG1-216ENST00000598938 TMEM258P61165 79 aa7.89□□□□□ -1.15
LIG1-216ENST00000598938 A6NN06 94 aa7.84□□□□□ -1.15
LIG1-216ENST00000598938 SEC61GP60059 68 aa7.8□□□□□ -1.16
LIG1-216ENST00000598938 KRTAP5-9P26371 169 aa7.79□□□□□ -1.16
LIG1-216ENST00000598938 LINC01554Q52M75 96 aa7.78□□□□□ -1.16
LIG1-216ENST00000598938 SERP1Q9Y6X1 66 aa7.78□□□□□ -1.16
LIG1-216ENST00000598938 KRTAP10-5P60370 271 aa7.77□□□□□ -1.17
LIG1-216ENST00000598938 PLAC4Q8WY50 150 aa7.75□□□□□ -1.17
LIG1-216ENST00000598938 KRTAP13-4Q3LI77 160 aa7.73□□□□□ -1.17
LIG1-216ENST00000598938 KMT2DO14686 5537 aa7.67□□□□□ -1.18
LIG1-216ENST00000598938 A0A1B0GU69 56 aa7.67□□□□□ -1.18
LIG1-216ENST00000598938 A0A1B0GU33 70 aa7.65□□□□□ -1.18
LIG1-216ENST00000598938 MDN1Q9NU22 5596 aa7.63□□□□□ -1.19
LIG1-216ENST00000598938 KRTAP2-3P0C7H8 128 aa7.63□□□□□ -1.19
LIG1-216ENST00000598938 KRTAP2-4Q9BYR9 128 aa7.63□□□□□ -1.19
LIG1-216ENST00000598938 MT1XP80297 61 aa7.62□□□□□ -1.19
LIG1-216ENST00000598938 PCP4P48539 62 aa7.61□□□□□ -1.19
LIG1-216ENST00000598938 PRO2289Q9P1D8 64 aa7.6□□□□□ -1.19
LIG1-216ENST00000598938 LINC01558Q9Y6Z2 57 aa7.6□□□□□ -1.19
LIG1-216ENST00000598938 SPATA8Q6RVD6 105 aa7.58□□□□□ -1.2
LIG1-216ENST00000598938 PRR15LQ9BU68 103 aa7.56□□□□□ -1.2
LIG1-216ENST00000598938 A0A0D9SG42 100 aa7.5□□□□□ -1.21
LIG1-216ENST00000598938 SMIM26A0A096LP01 95 aa7.44□□□□□ -1.22
LIG1-216ENST00000598938 KRTAP12-1P59990 96 aa7.4□□□□□ -1.22
LIG1-216ENST00000598938 SPRR2EP22531 72 aa7.39□□□□□ -1.23
LIG1-216ENST00000598938 SPRR2BP35325 72 aa7.39□□□□□ -1.23
LIG1-216ENST00000598938 SPRR2AP35326 72 aa7.39□□□□□ -1.23
LIG1-216ENST00000598938 CAMK2N1Q7Z7J9 78 aa7.38□□□□□ -1.23
LIG1-216ENST00000598938 V9GYY9 64 aa7.38□□□□□ -1.23
LIG1-216ENST00000598938 A8MU10 97 aa7.37□□□□□ -1.23
LIG1-216ENST00000598938 KRTAP12-2P59991 146 aa7.37□□□□□ -1.23
LIG1-216ENST00000598938 Q1T7F1 81 aa7.37□□□□□ -1.23
LIG1-216ENST00000598938 SPINT4Q6UDR6 99 aa7.37□□□□□ -1.23
LIG1-216ENST00000598938 SPRR2FQ96RM1 72 aa7.37□□□□□ -1.23
LIG1-216ENST00000598938 KRTAP2-2Q9BYT5 123 aa7.36□□□□□ -1.23
LIG1-216ENST00000598938 KRTAP2-1Q9BYU5 128 aa7.36□□□□□ -1.23
LIG1-216ENST00000598938 RPS28P62857 69 aaKnown RBP7.33□□□□□ -1.24
LIG1-216ENST00000598938 UQCR11O14957 56 aa7.32□□□□□ -1.24
LIG1-216ENST00000598938 KRTAP10-7P60409 375 aaPredicted RBP7.28□□□□□ -1.24
LIG1-216ENST00000598938 PSPHP1O15172 72 aa7.26□□□□□ -1.25
LIG1-216ENST00000598938 KRTAP10-12P60413 245 aa7.25□□□□□ -1.25
LIG1-216ENST00000598938 LCE1AQ5T7P2 110 aa7.24□□□□□ -1.25
LIG1-216ENST00000598938 KRTAP8-1Q8IUC2 63 aa7.2□□□□□ -1.26
LIG1-216ENST00000598938 MIR22HGQ0VDD5 57 aa7.19□□□□□ -1.26
LIG1-216ENST00000598938 KRTAP4-8A0A0G2JLE6 195 aa7.15□□□□□ -1.26
LIG1-216ENST00000598938 SPRR2DP22532 72 aa7.15□□□□□ -1.26
LIG1-216ENST00000598938 KRTAP4-8Q9BYQ9 185 aa7.15□□□□□ -1.26
LIG1-216ENST00000598938 GPR98Q8WXG9 6306 aa7.13□□□□□ -1.27
LIG1-216ENST00000598938 A6NED7 52 aa7.04□□□□□ -1.28
LIG1-216ENST00000598938 C10orf95Q9H7T3 257 aa7.03□□□□□ -1.28
LIG1-216ENST00000598938 LCE3BQ5TA77 95 aa7.01□□□□□ -1.29
LIG1-216ENST00000598938 K7ERS5 55 aa6.96□□□□□ -1.3
LIG1-216ENST00000598938 TNP1P09430 55 aa6.92□□□□□ -1.3
LIG1-216ENST00000598938 CDC42SE1Q9NRR8 79 aa6.83□□□□□ -1.32
LIG1-216ENST00000598938 KRTAP19-7Q3SYF9 63 aa6.81□□□□□ -1.32
LIG1-216ENST00000598938 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms