RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 H3BPC8 53 aa6.59□□□□□ -1.35
SHKBP1-217ENST00000598558 CSAG1Q6PB30 78 aa6.59□□□□□ -1.35
SHKBP1-217ENST00000598558 SSPOA2VEC9 5147 aa6.56□□□□□ -1.36
SHKBP1-217ENST00000598558 TRAV7A0A075B6U4 112 aa6.55□□□□□ -1.36
SHKBP1-217ENST00000598558 A8MUN3 132 aa6.51□□□□□ -1.37
SHKBP1-217ENST00000598558 KRTAP19-1Q8IUB9 90 aa6.5□□□□□ -1.37
SHKBP1-217ENST00000598558 SMIM20Q8N5G0 67 aa6.5□□□□□ -1.37
SHKBP1-217ENST00000598558 NDUFC1O43677 76 aa6.46□□□□□ -1.38
SHKBP1-217ENST00000598558 DMAC1Q96GE9 116 aa6.46□□□□□ -1.38
SHKBP1-217ENST00000598558 SNURFQ9Y675 71 aa6.44□□□□□ -1.38
SHKBP1-217ENST00000598558 SERP2Q8N6R1 65 aa6.41□□□□□ -1.38
SHKBP1-217ENST00000598558 SPRR2GQ9BYE4 73 aa6.39□□□□□ -1.39
SHKBP1-217ENST00000598558 C20orf197Q8N268 126 aa6.38□□□□□ -1.39
SHKBP1-217ENST00000598558 H0YAA0 97 aa6.37□□□□□ -1.39
SHKBP1-217ENST00000598558 FCGBPQ9Y6R7 5405 aaPredicted RBP6.37□□□□□ -1.39
SHKBP1-217ENST00000598558 KRTAP19-6Q3LI70 58 aa6.36□□□□□ -1.39
SHKBP1-217ENST00000598558 MT1BP07438 61 aa6.35□□□□□ -1.39
SHKBP1-217ENST00000598558 ADM2Q7Z4H4 148 aa6.34□□□□□ -1.39
SHKBP1-217ENST00000598558 PCP4P48539 62 aa6.33□□□□□ -1.4
SHKBP1-217ENST00000598558 KRTAP19-8Q3LI54 63 aa6.33□□□□□ -1.4
SHKBP1-217ENST00000598558 ACYP2P14621 99 aa6.31□□□□□ -1.4
SHKBP1-217ENST00000598558 KRTAP3-2Q9BYR7 98 aa6.29□□□□□ -1.4
SHKBP1-217ENST00000598558 P0C880 135 aa6.28□□□□□ -1.4
SHKBP1-217ENST00000598558 COX7CP15954 63 aa6.28□□□□□ -1.4
SHKBP1-217ENST00000598558 SPANXA2-OT1Q8N9U9 137 aa6.27□□□□□ -1.41
SHKBP1-217ENST00000598558 CRIPTQ9P021 101 aa6.27□□□□□ -1.41
SHKBP1-217ENST00000598558 Q5VV11 94 aa6.25□□□□□ -1.41
SHKBP1-217ENST00000598558 CYSTM1Q9H1C7 97 aa6.25□□□□□ -1.41
SHKBP1-217ENST00000598558 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.23□□□□□ -1.41
SHKBP1-217ENST00000598558 CHKB-CPT1BH3BT56 60 aa6.17□□□□□ -1.42
SHKBP1-217ENST00000598558 H7BZZ5 65 aa6.16□□□□□ -1.42
SHKBP1-217ENST00000598558 ANAPC13Q9BS18 74 aa6.14□□□□□ -1.43
SHKBP1-217ENST00000598558 SPTSSBQ8NFR3 76 aa6.13□□□□□ -1.43
SHKBP1-217ENST00000598558 KRTAP10-5P60370 271 aa6.11□□□□□ -1.43
SHKBP1-217ENST00000598558 COA5Q86WW8 74 aa6.11□□□□□ -1.43
SHKBP1-217ENST00000598558 R4GN34 69 aa6.11□□□□□ -1.43
SHKBP1-217ENST00000598558 CCDC179H3BU77 68 aa6.1□□□□□ -1.43
SHKBP1-217ENST00000598558 M0QZ58 72 aa6.1□□□□□ -1.43
SHKBP1-217ENST00000598558 A6NN06 94 aa6.09□□□□□ -1.43
SHKBP1-217ENST00000598558 KRTAP9-7A8MTY7 169 aa6.07□□□□□ -1.44
SHKBP1-217ENST00000598558 MACF1Q9UPN3 7388 aaKnown RBP6.06□□□□□ -1.44
SHKBP1-217ENST00000598558 LINC01554Q52M75 96 aa6.01□□□□□ -1.45
SHKBP1-217ENST00000598558 MT1XP80297 61 aa5.99□□□□□ -1.45
SHKBP1-217ENST00000598558 KRTAP13-4Q3LI77 160 aa5.98□□□□□ -1.45
SHKBP1-217ENST00000598558 PLAC4Q8WY50 150 aa5.97□□□□□ -1.45
SHKBP1-217ENST00000598558 SYNE2Q8WXH0 6885 aaKnown RBP5.96□□□□□ -1.45
SHKBP1-217ENST00000598558 KRTAP6-3Q3LI67 103 aa5.89□□□□□ -1.47
SHKBP1-217ENST00000598558 PRO2289Q9P1D8 64 aa5.85□□□□□ -1.47
SHKBP1-217ENST00000598558 SERP1Q9Y6X1 66 aa5.84□□□□□ -1.47
SHKBP1-217ENST00000598558 SEC61GP60059 68 aa5.82□□□□□ -1.48
SHKBP1-217ENST00000598558 ATP5EP56381 51 aaPredicted RBP5.81□□□□□ -1.48
SHKBP1-217ENST00000598558 SPATA8Q6RVD6 105 aa5.8□□□□□ -1.48
SHKBP1-217ENST00000598558 A0A1B0GU33 70 aa5.79□□□□□ -1.48
SHKBP1-217ENST00000598558 TMEM258P61165 79 aa5.78□□□□□ -1.48
SHKBP1-217ENST00000598558 A0A0D9SG42 100 aa5.75□□□□□ -1.49
SHKBP1-217ENST00000598558 KMT2DO14686 5537 aa5.74□□□□□ -1.49
SHKBP1-217ENST00000598558 A0A1B0GU69 56 aa5.74□□□□□ -1.49
SHKBP1-217ENST00000598558 KRTAP12-2P59991 146 aa5.74□□□□□ -1.49
SHKBP1-217ENST00000598558 KRTAP10-7P60409 375 aaPredicted RBP5.73□□□□□ -1.49
SHKBP1-217ENST00000598558 KRTAP5-9P26371 169 aa5.71□□□□□ -1.5
SHKBP1-217ENST00000598558 KRTAP4-8A0A0G2JLE6 195 aa5.7□□□□□ -1.5
SHKBP1-217ENST00000598558 KRTAP4-8Q9BYQ9 185 aa5.7□□□□□ -1.5
SHKBP1-217ENST00000598558 LINC01558Q9Y6Z2 57 aa5.68□□□□□ -1.5
SHKBP1-217ENST00000598558 KRTAP12-1P59990 96 aa5.67□□□□□ -1.5
SHKBP1-217ENST00000598558 KRTAP10-12P60413 245 aa5.67□□□□□ -1.5
SHKBP1-217ENST00000598558 A8MU10 97 aa5.65□□□□□ -1.5
SHKBP1-217ENST00000598558 SVIPQ8NHG7 77 aa5.65□□□□□ -1.5
SHKBP1-217ENST00000598558 MUC12Q9UKN1 5478 aa5.65□□□□□ -1.51
SHKBP1-217ENST00000598558 CAMK2N1Q7Z7J9 78 aa5.64□□□□□ -1.51
SHKBP1-217ENST00000598558 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
SHKBP1-217ENST00000598558 KRTAP8-1Q8IUC2 63 aa5.61□□□□□ -1.51
SHKBP1-217ENST00000598558 NEBP20929 6669 aa5.59□□□□□ -1.51
SHKBP1-217ENST00000598558 SMIM26A0A096LP01 95 aa5.58□□□□□ -1.52
SHKBP1-217ENST00000598558 PRR15LQ9BU68 103 aa5.58□□□□□ -1.52
SHKBP1-217ENST00000598558 SPRR2FQ96RM1 72 aa5.57□□□□□ -1.52
SHKBP1-217ENST00000598558 RPS28P62857 69 aaKnown RBP5.55□□□□□ -1.52
SHKBP1-217ENST00000598558 MDN1Q9NU22 5596 aa5.55□□□□□ -1.52
SHKBP1-217ENST00000598558 UQCR11O14957 56 aa5.45□□□□□ -1.54
SHKBP1-217ENST00000598558 SPRR2EP22531 72 aa5.44□□□□□ -1.54
SHKBP1-217ENST00000598558 SPRR2BP35325 72 aa5.44□□□□□ -1.54
SHKBP1-217ENST00000598558 SPRR2AP35326 72 aa5.44□□□□□ -1.54
SHKBP1-217ENST00000598558 LCE1AQ5T7P2 110 aa5.44□□□□□ -1.54
SHKBP1-217ENST00000598558 Q1T7F1 81 aa5.43□□□□□ -1.54
SHKBP1-217ENST00000598558 PSPHP1O15172 72 aa5.42□□□□□ -1.54
SHKBP1-217ENST00000598558 C10orf95Q9H7T3 257 aa5.42□□□□□ -1.54
SHKBP1-217ENST00000598558 V9GYY9 64 aa5.38□□□□□ -1.55
SHKBP1-217ENST00000598558 MIR22HGQ0VDD5 57 aa5.37□□□□□ -1.55
SHKBP1-217ENST00000598558 KRTAP19-7Q3SYF9 63 aa5.36□□□□□ -1.55
SHKBP1-217ENST00000598558 KRTAP20-1Q3LI63 56 aa5.32□□□□□ -1.56
SHKBP1-217ENST00000598558 MT1EP04732 61 aa5.28□□□□□ -1.56
SHKBP1-217ENST00000598558 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
SHKBP1-217ENST00000598558 TNP1P09430 55 aa5.25□□□□□ -1.57
SHKBP1-217ENST00000598558 KRTAP2-3P0C7H8 128 aa5.25□□□□□ -1.57
SHKBP1-217ENST00000598558 SPRR2DP22532 72 aa5.25□□□□□ -1.57
SHKBP1-217ENST00000598558 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
SHKBP1-217ENST00000598558 KRTAP2-4Q9BYR9 128 aa5.25□□□□□ -1.57
SHKBP1-217ENST00000598558 A6NED7 52 aa5.19□□□□□ -1.58
SHKBP1-217ENST00000598558 LCE5AQ5TCM9 118 aa5.17□□□□□ -1.58
SHKBP1-217ENST00000598558 PRO0628Q9UI54 55 aa5.17□□□□□ -1.58
SHKBP1-217ENST00000598558 KRTAP19-3Q7Z4W3 81 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms