RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 A8MUN3 132 aa7.01□□□□□ -1.29
UPF1-202ENST00000594243 KRTAP3-3Q9BYR6 98 aa6.98□□□□□ -1.29
UPF1-202ENST00000594243 SMIM20Q8N5G0 67 aa6.97□□□□□ -1.29
UPF1-202ENST00000594243 FAM236AA0A1B0GUQ0 79 aa6.96□□□□□ -1.3
UPF1-202ENST00000594243 FAM236BA0A1B0GV22 79 aa6.96□□□□□ -1.3
UPF1-202ENST00000594243 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.96□□□□□ -1.3
UPF1-202ENST00000594243 NDUFC1O43677 76 aa6.94□□□□□ -1.3
UPF1-202ENST00000594243 FCGBPQ9Y6R7 5405 aaPredicted RBP6.92□□□□□ -1.3
UPF1-202ENST00000594243 TRAV7A0A075B6U4 112 aa6.92□□□□□ -1.3
UPF1-202ENST00000594243 KRTAP9-7A8MTY7 169 aa6.9□□□□□ -1.3
UPF1-202ENST00000594243 KRTAP19-1Q8IUB9 90 aa6.85□□□□□ -1.31
UPF1-202ENST00000594243 DMAC1Q96GE9 116 aa6.84□□□□□ -1.31
UPF1-202ENST00000594243 H0YAA0 97 aa6.82□□□□□ -1.32
UPF1-202ENST00000594243 CRIPTQ9P021 101 aa6.79□□□□□ -1.32
UPF1-202ENST00000594243 SPRR2GQ9BYE4 73 aa6.78□□□□□ -1.32
UPF1-202ENST00000594243 KRTAP19-6Q3LI70 58 aa6.77□□□□□ -1.33
UPF1-202ENST00000594243 ACYP2P14621 99 aa6.76□□□□□ -1.33
UPF1-202ENST00000594243 SERP2Q8N6R1 65 aa6.76□□□□□ -1.33
UPF1-202ENST00000594243 SNURFQ9Y675 71 aa6.74□□□□□ -1.33
UPF1-202ENST00000594243 ADM2Q7Z4H4 148 aa6.73□□□□□ -1.33
UPF1-202ENST00000594243 Q5VV11 94 aa6.71□□□□□ -1.34
UPF1-202ENST00000594243 C20orf197Q8N268 126 aa6.71□□□□□ -1.34
UPF1-202ENST00000594243 KRTAP19-8Q3LI54 63 aa6.69□□□□□ -1.34
UPF1-202ENST00000594243 MACF1Q9UPN3 7388 aaKnown RBP6.68□□□□□ -1.34
UPF1-202ENST00000594243 SYNE2Q8WXH0 6885 aaKnown RBP6.67□□□□□ -1.34
UPF1-202ENST00000594243 SPANXA2-OT1Q8N9U9 137 aa6.66□□□□□ -1.34
UPF1-202ENST00000594243 MT1BP07438 61 aa6.65□□□□□ -1.34
UPF1-202ENST00000594243 SPTSSBQ8NFR3 76 aa6.65□□□□□ -1.34
UPF1-202ENST00000594243 CHKB-CPT1BH3BT56 60 aa6.62□□□□□ -1.35
UPF1-202ENST00000594243 COX7CP15954 63 aa6.61□□□□□ -1.35
UPF1-202ENST00000594243 PCP4P48539 62 aa6.58□□□□□ -1.36
UPF1-202ENST00000594243 P0C880 135 aa6.57□□□□□ -1.36
UPF1-202ENST00000594243 R4GN34 69 aa6.57□□□□□ -1.36
UPF1-202ENST00000594243 A6NN06 94 aa6.55□□□□□ -1.36
UPF1-202ENST00000594243 KRTAP3-2Q9BYR7 98 aa6.54□□□□□ -1.36
UPF1-202ENST00000594243 M0QZ58 72 aa6.5□□□□□ -1.37
UPF1-202ENST00000594243 KRTAP10-5P60370 271 aa6.48□□□□□ -1.37
UPF1-202ENST00000594243 PLAC4Q8WY50 150 aa6.46□□□□□ -1.38
UPF1-202ENST00000594243 ANAPC13Q9BS18 74 aa6.46□□□□□ -1.38
UPF1-202ENST00000594243 H7BZZ5 65 aa6.44□□□□□ -1.38
UPF1-202ENST00000594243 KRTAP6-3Q3LI67 103 aa6.43□□□□□ -1.38
UPF1-202ENST00000594243 COA5Q86WW8 74 aa6.43□□□□□ -1.38
UPF1-202ENST00000594243 CYSTM1Q9H1C7 97 aa6.41□□□□□ -1.38
UPF1-202ENST00000594243 LINC01554Q52M75 96 aa6.39□□□□□ -1.39
UPF1-202ENST00000594243 PRO2289Q9P1D8 64 aa6.37□□□□□ -1.39
UPF1-202ENST00000594243 SEC61GP60059 68 aa6.32□□□□□ -1.4
UPF1-202ENST00000594243 NEBP20929 6669 aa6.31□□□□□ -1.4
UPF1-202ENST00000594243 CCDC179H3BU77 68 aa6.3□□□□□ -1.4
UPF1-202ENST00000594243 SERP1Q9Y6X1 66 aa6.3□□□□□ -1.4
UPF1-202ENST00000594243 MT1XP80297 61 aa6.29□□□□□ -1.4
UPF1-202ENST00000594243 SVIPQ8NHG7 77 aa6.26□□□□□ -1.41
UPF1-202ENST00000594243 MUC12Q9UKN1 5478 aa6.25□□□□□ -1.41
UPF1-202ENST00000594243 ATP5EP56381 51 aaPredicted RBP6.22□□□□□ -1.41
UPF1-202ENST00000594243 KRTAP13-4Q3LI77 160 aa6.2□□□□□ -1.42
UPF1-202ENST00000594243 A0A1B0GU33 70 aa6.16□□□□□ -1.42
UPF1-202ENST00000594243 A0A1B0GU69 56 aa6.14□□□□□ -1.43
UPF1-202ENST00000594243 KRTAP12-2P59991 146 aa6.13□□□□□ -1.43
UPF1-202ENST00000594243 TMEM258P61165 79 aa6.11□□□□□ -1.43
UPF1-202ENST00000594243 KRTAP5-9P26371 169 aa6.1□□□□□ -1.43
UPF1-202ENST00000594243 KMT2DO14686 5537 aa6.1□□□□□ -1.43
UPF1-202ENST00000594243 SPATA8Q6RVD6 105 aa6.09□□□□□ -1.43
UPF1-202ENST00000594243 A0A0D9SG42 100 aa6.07□□□□□ -1.44
UPF1-202ENST00000594243 CAMK2N1Q7Z7J9 78 aa6.07□□□□□ -1.44
UPF1-202ENST00000594243 MDN1Q9NU22 5596 aa6.06□□□□□ -1.44
UPF1-202ENST00000594243 KRTAP20-1Q3LI63 56 aa6.03□□□□□ -1.44
UPF1-202ENST00000594243 PRR15LQ9BU68 103 aa6.03□□□□□ -1.44
UPF1-202ENST00000594243 KRTAP8-1Q8IUC2 63 aa6.02□□□□□ -1.45
UPF1-202ENST00000594243 KRTAP10-7P60409 375 aaPredicted RBP6.01□□□□□ -1.45
UPF1-202ENST00000594243 SMIM26A0A096LP01 95 aa6□□□□□ -1.45
UPF1-202ENST00000594243 SPINT4Q6UDR6 99 aa6□□□□□ -1.45
UPF1-202ENST00000594243 KRTAP10-12P60413 245 aa5.99□□□□□ -1.45
UPF1-202ENST00000594243 LINC01558Q9Y6Z2 57 aa5.98□□□□□ -1.45
UPF1-202ENST00000594243 KRTAP4-8A0A0G2JLE6 195 aa5.96□□□□□ -1.46
UPF1-202ENST00000594243 SPRR2FQ96RM1 72 aa5.96□□□□□ -1.46
UPF1-202ENST00000594243 KRTAP4-8Q9BYQ9 185 aa5.96□□□□□ -1.46
UPF1-202ENST00000594243 KRTAP12-1P59990 96 aa5.95□□□□□ -1.46
UPF1-202ENST00000594243 A8MU10 97 aa5.89□□□□□ -1.47
UPF1-202ENST00000594243 SPRR2EP22531 72 aa5.86□□□□□ -1.47
UPF1-202ENST00000594243 SPRR2BP35325 72 aa5.86□□□□□ -1.47
UPF1-202ENST00000594243 SPRR2AP35326 72 aa5.86□□□□□ -1.47
UPF1-202ENST00000594243 UQCR11O14957 56 aa5.83□□□□□ -1.48
UPF1-202ENST00000594243 KRTAP2-3P0C7H8 128 aa5.81□□□□□ -1.48
UPF1-202ENST00000594243 KRTAP2-4Q9BYR9 128 aa5.81□□□□□ -1.48
UPF1-202ENST00000594243 V9GYY9 64 aa5.79□□□□□ -1.48
UPF1-202ENST00000594243 RPS28P62857 69 aaKnown RBP5.77□□□□□ -1.49
UPF1-202ENST00000594243 LCE1AQ5T7P2 110 aa5.77□□□□□ -1.49
UPF1-202ENST00000594243 Q1T7F1 81 aa5.72□□□□□ -1.49
UPF1-202ENST00000594243 MIR22HGQ0VDD5 57 aa5.7□□□□□ -1.5
UPF1-202ENST00000594243 PSPHP1O15172 72 aa5.67□□□□□ -1.5
UPF1-202ENST00000594243 TNP1P09430 55 aa5.66□□□□□ -1.5
UPF1-202ENST00000594243 SPRR2DP22532 72 aa5.66□□□□□ -1.5
UPF1-202ENST00000594243 C10orf95Q9H7T3 257 aa5.66□□□□□ -1.5
UPF1-202ENST00000594243 KRTAP19-7Q3SYF9 63 aa5.62□□□□□ -1.51
UPF1-202ENST00000594243 KRTAP2-2Q9BYT5 123 aa5.62□□□□□ -1.51
UPF1-202ENST00000594243 KRTAP2-1Q9BYU5 128 aa5.62□□□□□ -1.51
UPF1-202ENST00000594243 K7ERS5 55 aa5.59□□□□□ -1.51
UPF1-202ENST00000594243 MT1EP04732 61 aa5.57□□□□□ -1.52
UPF1-202ENST00000594243 KRTAP19-5Q3LI72 72 aa5.54□□□□□ -1.52
UPF1-202ENST00000594243 A6NED7 52 aa5.51□□□□□ -1.53
UPF1-202ENST00000594243 LCE3AQ5TA76 89 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms