RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 A6NED7 52 aa7.24□□□□□ -1.25
LIG3-205ENST00000585941 SEC61GP60059 68 aa7.24□□□□□ -1.25
LIG3-205ENST00000585941 RBM12B-AS1Q9P1G2 102 aa7.22□□□□□ -1.25
LIG3-205ENST00000585941 LRP2P98164 4655 aa7.22□□□□□ -1.25
LIG3-205ENST00000585941 H1FX-AS1Q4G0G2 97 aa7.19□□□□□ -1.26
LIG3-205ENST00000585941 LPAP08519 4548 aa7.17□□□□□ -1.26
LIG3-205ENST00000585941 S4R3F8 94 aa7.17□□□□□ -1.26
LIG3-205ENST00000585941 CDC42SE1Q9NRR8 79 aa7.16□□□□□ -1.26
LIG3-205ENST00000585941 LCA10Q71F78 164 aa7.13□□□□□ -1.27
LIG3-205ENST00000585941 UQCR11O14957 56 aa7.12□□□□□ -1.27
LIG3-205ENST00000585941 KRTAP3-3Q9BYR6 98 aa7.1□□□□□ -1.27
LIG3-205ENST00000585941 SPATA8Q6RVD6 105 aa7.05□□□□□ -1.28
LIG3-205ENST00000585941 MIR22HGQ0VDD5 57 aa7.04□□□□□ -1.28
LIG3-205ENST00000585941 A8MU10 97 aa7.03□□□□□ -1.28
LIG3-205ENST00000585941 A0A1B0GU33 70 aa7.01□□□□□ -1.29
LIG3-205ENST00000585941 CSAG1Q6PB30 78 aa7.01□□□□□ -1.29
LIG3-205ENST00000585941 HERC1Q15751 4861 aa7□□□□□ -1.29
LIG3-205ENST00000585941 MUC17Q685J3 4493 aa7□□□□□ -1.29
LIG3-205ENST00000585941 KRTAP4-1Q9BYQ7 146 aa7□□□□□ -1.29
LIG3-205ENST00000585941 PMAIP1Q13794 54 aa6.92□□□□□ -1.3
LIG3-205ENST00000585941 KRTAP10-6P60371 365 aaPredicted RBP6.91□□□□□ -1.3
LIG3-205ENST00000585941 KRTAP3-2Q9BYR7 98 aa6.91□□□□□ -1.3
LIG3-205ENST00000585941 H0YAA0 97 aa6.9□□□□□ -1.31
LIG3-205ENST00000585941 HMCN2Q8NDA2 5059 aa6.88□□□□□ -1.31
LIG3-205ENST00000585941 KRTAP19-2Q3LHN2 52 aa6.87□□□□□ -1.31
LIG3-205ENST00000585941 ADM2Q7Z4H4 148 aa6.86□□□□□ -1.31
LIG3-205ENST00000585941 A6NN06 94 aa6.84□□□□□ -1.32
LIG3-205ENST00000585941 P0C880 135 aa6.82□□□□□ -1.32
LIG3-205ENST00000585941 M0QZ58 72 aa6.75□□□□□ -1.33
LIG3-205ENST00000585941 K7ERS5 55 aa6.74□□□□□ -1.33
LIG3-205ENST00000585941 KRTAP13-4Q3LI77 160 aa6.73□□□□□ -1.33
LIG3-205ENST00000585941 FLGP20930 4061 aaPredicted RBP6.7□□□□□ -1.34
LIG3-205ENST00000585941 KTN1-AS1Q86SY8 53 aa6.7□□□□□ -1.34
LIG3-205ENST00000585941 A0A0D9SG42 100 aa6.65□□□□□ -1.35
LIG3-205ENST00000585941 MUC2Q02817 5179 aa6.64□□□□□ -1.35
LIG3-205ENST00000585941 LCE2CQ5TA81 110 aa6.63□□□□□ -1.35
LIG3-205ENST00000585941 R4GN34 69 aa6.63□□□□□ -1.35
LIG3-205ENST00000585941 UBR4Q5T4S7 5183 aa6.6□□□□□ -1.35
LIG3-205ENST00000585941 CRIPTQ9P021 101 aa6.55□□□□□ -1.36
LIG3-205ENST00000585941 KRTAP12-1P59990 96 aa6.52□□□□□ -1.37
LIG3-205ENST00000585941 LORP23490 312 aaPredicted RBP6.5□□□□□ -1.37
LIG3-205ENST00000585941 KRTAP12-2P59991 146 aa6.5□□□□□ -1.37
LIG3-205ENST00000585941 MT1HP80294 61 aa6.5□□□□□ -1.37
LIG3-205ENST00000585941 RNF213Q63HN8 5207 aa6.5□□□□□ -1.37
LIG3-205ENST00000585941 M0R2T5 61 aa6.49□□□□□ -1.37
LIG3-205ENST00000585941 SPINT4Q6UDR6 99 aa6.49□□□□□ -1.37
LIG3-205ENST00000585941 LINC01554Q52M75 96 aa6.48□□□□□ -1.37
LIG3-205ENST00000585941 ROMO1P60602 79 aa6.45□□□□□ -1.38
LIG3-205ENST00000585941 PRAC1Q96KF2 57 aa6.39□□□□□ -1.39
LIG3-205ENST00000585941 FAT4Q6V0I7 4981 aa6.37□□□□□ -1.39
LIG3-205ENST00000585941 SPRR2GQ9BYE4 73 aa6.3□□□□□ -1.4
LIG3-205ENST00000585941 MT2AP02795 61 aa6.29□□□□□ -1.4
LIG3-205ENST00000585941 LCE2DQ5TA82 110 aaPredicted RBP6.29□□□□□ -1.4
LIG3-205ENST00000585941 KRTAP9-8Q9BYQ0 159 aa6.29□□□□□ -1.4
LIG3-205ENST00000585941 KRTAP10-10P60014 251 aa6.27□□□□□ -1.41
LIG3-205ENST00000585941 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
LIG3-205ENST00000585941 MT1FP04733 61 aa6.24□□□□□ -1.41
LIG3-205ENST00000585941 CAMK2N1Q7Z7J9 78 aa6.23□□□□□ -1.41
LIG3-205ENST00000585941 KRTAP19-1Q8IUB9 90 aa6.22□□□□□ -1.41
LIG3-205ENST00000585941 PLAC4Q8WY50 150 aa6.17□□□□□ -1.42
LIG3-205ENST00000585941 C10orf95Q9H7T3 257 aa6.15□□□□□ -1.42
LIG3-205ENST00000585941 KRTAP19-8Q3LI54 63 aa6.1□□□□□ -1.43
LIG3-205ENST00000585941 LCE2AQ5TA79 106 aaPredicted RBP6.1□□□□□ -1.43
LIG3-205ENST00000585941 KRTAP9-3Q9BYQ3 159 aa6.05□□□□□ -1.44
LIG3-205ENST00000585941 KRTAP9-2Q9BYQ4 174 aa6.01□□□□□ -1.45
LIG3-205ENST00000585941 TNP1P09430 55 aa5.98□□□□□ -1.45
LIG3-205ENST00000585941 MT1BP07438 61 aa5.96□□□□□ -1.46
LIG3-205ENST00000585941 PP632Q6XCG6 107 aa5.95□□□□□ -1.46
LIG3-205ENST00000585941 KRTAP23-1A1A580 65 aa5.9□□□□□ -1.47
LIG3-205ENST00000585941 H3BS24 57 aa5.88□□□□□ -1.47
LIG3-205ENST00000585941 KRTAP9-6A0A140TA67 174 aa5.84□□□□□ -1.47
LIG3-205ENST00000585941 LCE2BO14633 110 aa5.83□□□□□ -1.48
LIG3-205ENST00000585941 KRTAP10-5P60370 271 aa5.82□□□□□ -1.48
LIG3-205ENST00000585941 MT1XP80297 61 aa5.82□□□□□ -1.48
LIG3-205ENST00000585941 PRO2289Q9P1D8 64 aa5.82□□□□□ -1.48
LIG3-205ENST00000585941 CRCT1Q9UGL9 99 aa5.66□□□□□ -1.5
LIG3-205ENST00000585941 LCE3AQ5TA76 89 aa5.63□□□□□ -1.51
LIG3-205ENST00000585941 KRTAP10-12P60413 245 aa5.62□□□□□ -1.51
LIG3-205ENST00000585941 FSIP2Q5CZC0 6907 aa5.6□□□□□ -1.51
LIG3-205ENST00000585941 KRTAP10-7P60409 375 aaPredicted RBP5.57□□□□□ -1.52
LIG3-205ENST00000585941 KRTAP15-1Q3LI76 137 aa5.57□□□□□ -1.52
LIG3-205ENST00000585941 KRTAP8-1Q8IUC2 63 aa5.56□□□□□ -1.52
LIG3-205ENST00000585941 USH2AO75445 5202 aa5.54□□□□□ -1.52
LIG3-205ENST00000585941 KRTAP19-6Q3LI70 58 aa5.47□□□□□ -1.53
LIG3-205ENST00000585941 KRTAP12-3P60328 96 aa5.43□□□□□ -1.54
LIG3-205ENST00000585941 SSPOA2VEC9 5147 aa5.4□□□□□ -1.54
LIG3-205ENST00000585941 SPRR5A0A1B0GTR4 108 aa5.31□□□□□ -1.56
LIG3-205ENST00000585941 KRTAP19-5Q3LI72 72 aa5.31□□□□□ -1.56
LIG3-205ENST00000585941 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
LIG3-205ENST00000585941 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
LIG3-205ENST00000585941 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.28□□□□□ -1.56
LIG3-205ENST00000585941 LUZP6Q538Z0 58 aa5.28□□□□□ -1.56
LIG3-205ENST00000585941 KRTAP9-7A8MTY7 169 aa5.24□□□□□ -1.57
LIG3-205ENST00000585941 NDUFAF8A1L188 74 aa5.22□□□□□ -1.57
LIG3-205ENST00000585941 KRTAP19-7Q3SYF9 63 aa5.18□□□□□ -1.58
LIG3-205ENST00000585941 KRTAP19-4Q3LI73 84 aa5.17□□□□□ -1.58
LIG3-205ENST00000585941 FCGBPQ9Y6R7 5405 aaPredicted RBP5.14□□□□□ -1.59
LIG3-205ENST00000585941 KMT2DO14686 5537 aa5.14□□□□□ -1.59
LIG3-205ENST00000585941 A0A0A0MQY5 61 aa5.12□□□□□ -1.59
LIG3-205ENST00000585941 MT1EP04732 61 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms