RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 SCGB1A1P11684 91 aa7.51□□□□□ -1.21
CHD3-215ENST00000572750 MP68P56378 58 aa7.5□□□□□ -1.21
CHD3-215ENST00000572750 IMUPQ9GZP8 106 aa7.5□□□□□ -1.21
CHD3-215ENST00000572750 C5orf47Q569G3 176 aa7.48□□□□□ -1.21
CHD3-215ENST00000572750 KLKP1Q107X0 134 aa7.47□□□□□ -1.21
CHD3-215ENST00000572750 LCA10Q71F78 164 aa7.47□□□□□ -1.21
CHD3-215ENST00000572750 KRTAP6-3Q3LI67 103 aa7.46□□□□□ -1.22
CHD3-215ENST00000572750 FAM236AA0A1B0GUQ0 79 aa7.45□□□□□ -1.22
CHD3-215ENST00000572750 FAM236BA0A1B0GV22 79 aa7.45□□□□□ -1.22
CHD3-215ENST00000572750 KRTAP9-3Q9BYQ3 159 aa7.45□□□□□ -1.22
CHD3-215ENST00000572750 H3BPC8 53 aa7.39□□□□□ -1.23
CHD3-215ENST00000572750 CSAG1Q6PB30 78 aa7.38□□□□□ -1.23
CHD3-215ENST00000572750 MUC12Q9UKN1 5478 aa7.37□□□□□ -1.23
CHD3-215ENST00000572750 KRTAP3-3Q9BYR6 98 aa7.37□□□□□ -1.23
CHD3-215ENST00000572750 TRAV7A0A075B6U4 112 aa7.34□□□□□ -1.23
CHD3-215ENST00000572750 A8MUN3 132 aa7.34□□□□□ -1.23
CHD3-215ENST00000572750 SMIM20Q8N5G0 67 aa7.33□□□□□ -1.24
CHD3-215ENST00000572750 KRTAP19-6Q3LI70 58 aa7.31□□□□□ -1.24
CHD3-215ENST00000572750 KRTAP20-1Q3LI63 56 aa7.27□□□□□ -1.25
CHD3-215ENST00000572750 NDUFC1O43677 76 aa7.26□□□□□ -1.25
CHD3-215ENST00000572750 DMAC1Q96GE9 116 aa7.25□□□□□ -1.25
CHD3-215ENST00000572750 SNURFQ9Y675 71 aa7.22□□□□□ -1.25
CHD3-215ENST00000572750 SERP2Q8N6R1 65 aa7.18□□□□□ -1.26
CHD3-215ENST00000572750 C20orf197Q8N268 126 aa7.16□□□□□ -1.26
CHD3-215ENST00000572750 H0YAA0 97 aa7.12□□□□□ -1.27
CHD3-215ENST00000572750 SPRR2GQ9BYE4 73 aa7.11□□□□□ -1.27
CHD3-215ENST00000572750 ADM2Q7Z4H4 148 aa7.1□□□□□ -1.27
CHD3-215ENST00000572750 MDN1Q9NU22 5596 aa7.09□□□□□ -1.27
CHD3-215ENST00000572750 ACYP2P14621 99 aa7.07□□□□□ -1.28
CHD3-215ENST00000572750 CRIPTQ9P021 101 aa7.05□□□□□ -1.28
CHD3-215ENST00000572750 COX7CP15954 63 aa7.03□□□□□ -1.28
CHD3-215ENST00000572750 SPANXA2-OT1Q8N9U9 137 aa7.03□□□□□ -1.28
CHD3-215ENST00000572750 MT1BP07438 61 aa7.02□□□□□ -1.29
CHD3-215ENST00000572750 KRTAP19-8Q3LI54 63 aa7.02□□□□□ -1.29
CHD3-215ENST00000572750 Q5VV11 94 aa7.02□□□□□ -1.29
CHD3-215ENST00000572750 CHKB-CPT1BH3BT56 60 aa6.99□□□□□ -1.29
CHD3-215ENST00000572750 KMT2DO14686 5537 aa6.99□□□□□ -1.29
CHD3-215ENST00000572750 P0C880 135 aa6.98□□□□□ -1.29
CHD3-215ENST00000572750 CYSTM1Q9H1C7 97 aa6.95□□□□□ -1.3
CHD3-215ENST00000572750 SPTSSBQ8NFR3 76 aa6.94□□□□□ -1.3
CHD3-215ENST00000572750 KRTAP3-2Q9BYR7 98 aa6.94□□□□□ -1.3
CHD3-215ENST00000572750 ANAPC13Q9BS18 74 aa6.93□□□□□ -1.3
CHD3-215ENST00000572750 H7BZZ5 65 aa6.89□□□□□ -1.31
CHD3-215ENST00000572750 R4GN34 69 aa6.88□□□□□ -1.31
CHD3-215ENST00000572750 KRTAP2-3P0C7H8 128 aa6.87□□□□□ -1.31
CHD3-215ENST00000572750 KRTAP2-4Q9BYR9 128 aa6.87□□□□□ -1.31
CHD3-215ENST00000572750 M0QZ58 72 aa6.86□□□□□ -1.31
CHD3-215ENST00000572750 COA5Q86WW8 74 aa6.86□□□□□ -1.31
CHD3-215ENST00000572750 A6NN06 94 aa6.83□□□□□ -1.32
CHD3-215ENST00000572750 KRTAP5-9P26371 169 aa6.81□□□□□ -1.32
CHD3-215ENST00000572750 CCDC179H3BU77 68 aa6.8□□□□□ -1.32
CHD3-215ENST00000572750 KRTAP10-5P60370 271 aa6.79□□□□□ -1.32
CHD3-215ENST00000572750 RPS28P62857 69 aaKnown RBP6.76□□□□□ -1.33
CHD3-215ENST00000572750 LINC01554Q52M75 96 aa6.76□□□□□ -1.33
CHD3-215ENST00000572750 GPR98Q8WXG9 6306 aa6.73□□□□□ -1.33
CHD3-215ENST00000572750 PLAC4Q8WY50 150 aa6.71□□□□□ -1.34
CHD3-215ENST00000572750 MT1XP80297 61 aa6.65□□□□□ -1.34
CHD3-215ENST00000572750 KRTAP13-4Q3LI77 160 aa6.63□□□□□ -1.35
CHD3-215ENST00000572750 ATP5EP56381 51 aaPredicted RBP6.61□□□□□ -1.35
CHD3-215ENST00000572750 PRO2289Q9P1D8 64 aa6.61□□□□□ -1.35
CHD3-215ENST00000572750 SEC61GP60059 68 aa6.6□□□□□ -1.35
CHD3-215ENST00000572750 KRTAP2-2Q9BYT5 123 aa6.59□□□□□ -1.35
CHD3-215ENST00000572750 KRTAP2-1Q9BYU5 128 aa6.59□□□□□ -1.35
CHD3-215ENST00000572750 SERP1Q9Y6X1 66 aa6.58□□□□□ -1.36
CHD3-215ENST00000572750 TMEM258P61165 79 aa6.56□□□□□ -1.36
CHD3-215ENST00000572750 PRO0628Q9UI54 55 aa6.53□□□□□ -1.36
CHD3-215ENST00000572750 A0A1B0GU33 70 aa6.48□□□□□ -1.37
CHD3-215ENST00000572750 A0A1B0GU69 56 aa6.48□□□□□ -1.37
CHD3-215ENST00000572750 SPRR2EP22531 72 aa6.48□□□□□ -1.37
CHD3-215ENST00000572750 SPRR2BP35325 72 aa6.48□□□□□ -1.37
CHD3-215ENST00000572750 SPRR2AP35326 72 aa6.48□□□□□ -1.37
CHD3-215ENST00000572750 SPATA8Q6RVD6 105 aa6.48□□□□□ -1.37
CHD3-215ENST00000572750 A0A0D9SG42 100 aa6.46□□□□□ -1.38
CHD3-215ENST00000572750 V9GYY9 64 aa6.46□□□□□ -1.38
CHD3-215ENST00000572750 KRTAP12-2P59991 146 aa6.4□□□□□ -1.38
CHD3-215ENST00000572750 SPRR2FQ96RM1 72 aa6.39□□□□□ -1.39
CHD3-215ENST00000572750 CAMK2N1Q7Z7J9 78 aa6.37□□□□□ -1.39
CHD3-215ENST00000572750 KRTAP10-7P60409 375 aaPredicted RBP6.36□□□□□ -1.39
CHD3-215ENST00000572750 LCE1AQ5T7P2 110 aa6.35□□□□□ -1.39
CHD3-215ENST00000572750 PRR15LQ9BU68 103 aa6.34□□□□□ -1.39
CHD3-215ENST00000572750 SMIM26A0A096LP01 95 aa6.33□□□□□ -1.4
CHD3-215ENST00000572750 LINC01558Q9Y6Z2 57 aa6.33□□□□□ -1.4
CHD3-215ENST00000572750 SPINT4Q6UDR6 99 aa6.32□□□□□ -1.4
CHD3-215ENST00000572750 KRTAP12-1P59990 96 aa6.31□□□□□ -1.4
CHD3-215ENST00000572750 A8MU10 97 aa6.3□□□□□ -1.4
CHD3-215ENST00000572750 KRTAP10-12P60413 245 aa6.29□□□□□ -1.4
CHD3-215ENST00000572750 KRTAP8-1Q8IUC2 63 aa6.29□□□□□ -1.4
CHD3-215ENST00000572750 KRTAP4-8A0A0G2JLE6 195 aa6.28□□□□□ -1.4
CHD3-215ENST00000572750 KRTAP4-8Q9BYQ9 185 aa6.28□□□□□ -1.4
CHD3-215ENST00000572750 SPRR2DP22532 72 aa6.26□□□□□ -1.41
CHD3-215ENST00000572750 LCE3BQ5TA77 95 aa6.18□□□□□ -1.42
CHD3-215ENST00000572750 DSTQ03001 7570 aaKnown RBP6.17□□□□□ -1.42
CHD3-215ENST00000572750 PMAIP1Q13794 54 aa6.17□□□□□ -1.42
CHD3-215ENST00000572750 UQCR11O14957 56 aa6.14□□□□□ -1.43
CHD3-215ENST00000572750 BRK1Q8WUW1 75 aa6.13□□□□□ -1.43
CHD3-215ENST00000572750 PSPHP1O15172 72 aa6.09□□□□□ -1.43
CHD3-215ENST00000572750 Q1T7F1 81 aa6.08□□□□□ -1.44
CHD3-215ENST00000572750 KRTAP4-9Q9BYQ8 210 aa6.05□□□□□ -1.44
CHD3-215ENST00000572750 MIR22HGQ0VDD5 57 aa6.04□□□□□ -1.44
CHD3-215ENST00000572750 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms