RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MUC2Q02817 5179 aa4.37□□□□□ -1.71
VPS39-213ENST00000570062 RETNLBQ9BQ08 111 aa4.37□□□□□ -1.71
VPS39-213ENST00000570062 KRTAP13-3Q3SY46 172 aa4.36□□□□□ -1.71
VPS39-213ENST00000570062 ATP11AUNQ6ZP68 121 aa4.36□□□□□ -1.71
VPS39-213ENST00000570062 CYP4F30PQ9H0H9 118 aa4.36□□□□□ -1.71
VPS39-213ENST00000570062 LRP1Q07954 4544 aaKnown RBP4.36□□□□□ -1.71
VPS39-213ENST00000570062 C9orf92A6NGG3 77 aa4.35□□□□□ -1.71
VPS39-213ENST00000570062 IGKV2-30P06310 120 aa4.35□□□□□ -1.71
VPS39-213ENST00000570062 Q5W150 140 aa4.35□□□□□ -1.71
VPS39-213ENST00000570062 PRR4Q16378 134 aa4.34□□□□□ -1.71
VPS39-213ENST00000570062 TPRXLQ17RH7 258 aa4.34□□□□□ -1.71
VPS39-213ENST00000570062 C7orf65Q6ZTY9 151 aa4.34□□□□□ -1.71
VPS39-213ENST00000570062 CYSTM1Q9H1C7 97 aa4.34□□□□□ -1.71
VPS39-213ENST00000570062 FAT4Q6V0I7 4981 aa4.34□□□□□ -1.72
VPS39-213ENST00000570062 SERP1Q9Y6X1 66 aa4.33□□□□□ -1.72
VPS39-213ENST00000570062 RPL37P61927 97 aaKnown RBP4.31□□□□□ -1.72
VPS39-213ENST00000570062 PCOTHQ58A44 107 aa4.29□□□□□ -1.72
VPS39-213ENST00000570062 IGKV2D-30A0A075B6S6 120 aa4.28□□□□□ -1.72
VPS39-213ENST00000570062 A8MUN3 132 aa4.28□□□□□ -1.72
VPS39-213ENST00000570062 ACYP2P14621 99 aa4.28□□□□□ -1.72
VPS39-213ENST00000570062 HRES1P13985 223 aa4.26□□□□□ -1.73
VPS39-213ENST00000570062 SMIM26A0A096LP01 95 aa4.25□□□□□ -1.73
VPS39-213ENST00000570062 SPINK7P58062 85 aa4.25□□□□□ -1.73
VPS39-213ENST00000570062 SEC61BP60468 96 aaKnown RBP4.24□□□□□ -1.73
VPS39-213ENST00000570062 LRP2P98164 4655 aa4.24□□□□□ -1.73
VPS39-213ENST00000570062 LCE1AQ5T7P2 110 aa4.23□□□□□ -1.73
VPS39-213ENST00000570062 DMAC1Q96GE9 116 aa4.23□□□□□ -1.73
VPS39-213ENST00000570062 V9GYY9 64 aa4.23□□□□□ -1.73
VPS39-213ENST00000570062 CHKB-CPT1BH3BT56 60 aa4.2□□□□□ -1.74
VPS39-213ENST00000570062 SPTSSBQ8NFR3 76 aa4.2□□□□□ -1.74
VPS39-213ENST00000570062 COA5Q86WW8 74 aa4.19□□□□□ -1.74
VPS39-213ENST00000570062 COX6B2Q6YFQ2 88 aa4.18□□□□□ -1.74
VPS39-213ENST00000570062 RBM12B-AS1Q9P1G2 102 aa4.16□□□□□ -1.74
VPS39-213ENST00000570062 C4orf26Q17RF5 130 aa4.15□□□□□ -1.75
VPS39-213ENST00000570062 Q1T7F1 81 aa4.14□□□□□ -1.75
VPS39-213ENST00000570062 KRTAP10-7P60409 375 aaPredicted RBP4.12□□□□□ -1.75
VPS39-213ENST00000570062 FSIP2Q5CZC0 6907 aa4.1□□□□□ -1.75
VPS39-213ENST00000570062 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.1□□□□□ -1.75
VPS39-213ENST00000570062 PRR15LQ9BU68 103 aa4.1□□□□□ -1.75
VPS39-213ENST00000570062 CRCT1Q9UGL9 99 aa4.1□□□□□ -1.75
VPS39-213ENST00000570062 SEC61GP60059 68 aa4.08□□□□□ -1.76
VPS39-213ENST00000570062 H1FX-AS1Q4G0G2 97 aa4.08□□□□□ -1.76
VPS39-213ENST00000570062 LINC01558Q9Y6Z2 57 aa4.08□□□□□ -1.76
VPS39-213ENST00000570062 MPLKIPQ8TAP9 179 aa4.07□□□□□ -1.76
VPS39-213ENST00000570062 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
VPS39-213ENST00000570062 KRTAP10-6P60371 365 aaPredicted RBP4.04□□□□□ -1.76
VPS39-213ENST00000570062 KRTAP5-11Q6L8G4 156 aa4.04□□□□□ -1.76
VPS39-213ENST00000570062 A0A1B0GU69 56 aa4.03□□□□□ -1.76
VPS39-213ENST00000570062 S4R3F8 94 aa4.03□□□□□ -1.76
VPS39-213ENST00000570062 LPAP08519 4548 aa4.03□□□□□ -1.76
VPS39-213ENST00000570062 CSAG1Q6PB30 78 aa3.99□□□□□ -1.77
VPS39-213ENST00000570062 KRTAP2-2Q9BYT5 123 aa3.99□□□□□ -1.77
VPS39-213ENST00000570062 PSPHP1O15172 72 aa3.97□□□□□ -1.77
VPS39-213ENST00000570062 LCA10Q71F78 164 aa3.97□□□□□ -1.77
VPS39-213ENST00000570062 Q5VV11 94 aa3.95□□□□□ -1.78
VPS39-213ENST00000570062 UQCR11O14957 56 aa3.94□□□□□ -1.78
VPS39-213ENST00000570062 A6NED7 52 aa3.92□□□□□ -1.78
VPS39-213ENST00000570062 H0YAA0 97 aa3.92□□□□□ -1.78
VPS39-213ENST00000570062 KRTAP4-1Q9BYQ7 146 aa3.91□□□□□ -1.78
VPS39-213ENST00000570062 A0A1B0GU33 70 aa3.89□□□□□ -1.79
VPS39-213ENST00000570062 CDC42SE1Q9NRR8 79 aa3.88□□□□□ -1.79
VPS39-213ENST00000570062 BRK1Q8WUW1 75 aa3.87□□□□□ -1.79
VPS39-213ENST00000570062 MIR22HGQ0VDD5 57 aa3.86□□□□□ -1.79
VPS39-213ENST00000570062 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
VPS39-213ENST00000570062 PRO0628Q9UI54 55 aa3.86□□□□□ -1.79
VPS39-213ENST00000570062 KRTAP19-2Q3LHN2 52 aa3.85□□□□□ -1.79
VPS39-213ENST00000570062 SPATA8Q6RVD6 105 aa3.85□□□□□ -1.79
VPS39-213ENST00000570062 M0QZ58 72 aa3.83□□□□□ -1.8
VPS39-213ENST00000570062 ADM2Q7Z4H4 148 aa3.83□□□□□ -1.8
VPS39-213ENST00000570062 K7ERS5 55 aa3.8□□□□□ -1.8
VPS39-213ENST00000570062 CRIPTQ9P021 101 aa3.79□□□□□ -1.8
VPS39-213ENST00000570062 FLGP20930 4061 aaPredicted RBP3.76□□□□□ -1.81
VPS39-213ENST00000570062 M0R2T5 61 aa3.76□□□□□ -1.81
VPS39-213ENST00000570062 P0C880 135 aa3.75□□□□□ -1.81
VPS39-213ENST00000570062 R4GN34 69 aa3.74□□□□□ -1.81
VPS39-213ENST00000570062 MT1HP80294 61 aa3.71□□□□□ -1.82
VPS39-213ENST00000570062 PMAIP1Q13794 54 aa3.7□□□□□ -1.82
VPS39-213ENST00000570062 A6NN06 94 aa3.67□□□□□ -1.82
VPS39-213ENST00000570062 SSPOA2VEC9 5147 aa3.66□□□□□ -1.82
VPS39-213ENST00000570062 A8MU10 97 aa3.64□□□□□ -1.83
VPS39-213ENST00000570062 KRTAP13-4Q3LI77 160 aa3.64□□□□□ -1.83
VPS39-213ENST00000570062 A0A0D9SG42 100 aa3.63□□□□□ -1.83
VPS39-213ENST00000570062 MT3P25713 68 aa3.62□□□□□ -1.83
VPS39-213ENST00000570062 SYNE2Q8WXH0 6885 aaKnown RBP3.62□□□□□ -1.83
VPS39-213ENST00000570062 KRTAP10-10P60014 251 aa3.6□□□□□ -1.83
VPS39-213ENST00000570062 SPINT4Q6UDR6 99 aa3.6□□□□□ -1.83
VPS39-213ENST00000570062 LINC01554Q52M75 96 aa3.59□□□□□ -1.83
VPS39-213ENST00000570062 SPRR2GQ9BYE4 73 aa3.59□□□□□ -1.83
VPS39-213ENST00000570062 USH2AO75445 5202 aa3.58□□□□□ -1.84
VPS39-213ENST00000570062 FCGBPQ9Y6R7 5405 aaPredicted RBP3.58□□□□□ -1.84
VPS39-213ENST00000570062 MT2AP02795 61 aa3.57□□□□□ -1.84
VPS39-213ENST00000570062 KRTAP12-1P59990 96 aa3.57□□□□□ -1.84
VPS39-213ENST00000570062 KRTAP5-1Q6L8H4 278 aa3.56□□□□□ -1.84
VPS39-213ENST00000570062 KTN1-AS1Q86SY8 53 aa3.56□□□□□ -1.84
VPS39-213ENST00000570062 KRTAP12-2P59991 146 aa3.54□□□□□ -1.84
VPS39-213ENST00000570062 ROMO1P60602 79 aa3.54□□□□□ -1.84
VPS39-213ENST00000570062 PLAC4Q8WY50 150 aa3.54□□□□□ -1.84
VPS39-213ENST00000570062 MT1FP04733 61 aa3.52□□□□□ -1.85
VPS39-213ENST00000570062 CAMK2N1Q7Z7J9 78 aa3.52□□□□□ -1.85
VPS39-213ENST00000570062 MACF1Q9UPN3 7388 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms