RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 NDUFC1O43677 76 aa10.3□□□□□ -0.76
CLN3-234ENST00000568472 KRTAP9-3Q9BYQ3 159 aa10.3□□□□□ -0.76
CLN3-234ENST00000568472 DMAC1Q96GE9 116 aa10.27□□□□□ -0.77
CLN3-234ENST00000568472 C20orf197Q8N268 126 aa10.2□□□□□ -0.78
CLN3-234ENST00000568472 SNURFQ9Y675 71 aa10.2□□□□□ -0.78
CLN3-234ENST00000568472 KRTAP9-6A0A140TA67 174 aa10.18□□□□□ -0.78
CLN3-234ENST00000568472 CRCT1Q9UGL9 99 aa10.18□□□□□ -0.78
CLN3-234ENST00000568472 FSIP2Q5CZC0 6907 aa10.17□□□□□ -0.78
CLN3-234ENST00000568472 ACYP2P14621 99 aa10.15□□□□□ -0.78
CLN3-234ENST00000568472 LCE2BO14633 110 aa10.12□□□□□ -0.79
CLN3-234ENST00000568472 H0YAA0 97 aa10.11□□□□□ -0.79
CLN3-234ENST00000568472 COX7CP15954 63 aa10.11□□□□□ -0.79
CLN3-234ENST00000568472 SPANXA2-OT1Q8N9U9 137 aa10.11□□□□□ -0.79
CLN3-234ENST00000568472 USH2AO75445 5202 aa10.07□□□□□ -0.8
CLN3-234ENST00000568472 CRIPTQ9P021 101 aa10.01□□□□□ -0.81
CLN3-234ENST00000568472 SPTSSBQ8NFR3 76 aa9.99□□□□□ -0.81
CLN3-234ENST00000568472 ANAPC13Q9BS18 74 aa9.97□□□□□ -0.81
CLN3-234ENST00000568472 KRTAP19-1Q8IUB9 90 aa9.95□□□□□ -0.82
CLN3-234ENST00000568472 CHKB-CPT1BH3BT56 60 aa9.94□□□□□ -0.82
CLN3-234ENST00000568472 ADM2Q7Z4H4 148 aa9.94□□□□□ -0.82
CLN3-234ENST00000568472 SPRR2GQ9BYE4 73 aa9.94□□□□□ -0.82
CLN3-234ENST00000568472 SSPOA2VEC9 5147 aa9.86□□□□□ -0.83
CLN3-234ENST00000568472 H7BZZ5 65 aa9.85□□□□□ -0.83
CLN3-234ENST00000568472 KRTAP19-8Q3LI54 63 aa9.79□□□□□ -0.84
CLN3-234ENST00000568472 Q5VV11 94 aa9.78□□□□□ -0.84
CLN3-234ENST00000568472 CYSTM1Q9H1C7 97 aa9.78□□□□□ -0.84
CLN3-234ENST00000568472 KRTAP19-6Q3LI70 58 aa9.76□□□□□ -0.85
CLN3-234ENST00000568472 P0C880 135 aa9.74□□□□□ -0.85
CLN3-234ENST00000568472 COA5Q86WW8 74 aa9.74□□□□□ -0.85
CLN3-234ENST00000568472 KRTAP3-2Q9BYR7 98 aa9.74□□□□□ -0.85
CLN3-234ENST00000568472 CCDC179H3BU77 68 aa9.7□□□□□ -0.86
CLN3-234ENST00000568472 R4GN34 69 aa9.7□□□□□ -0.86
CLN3-234ENST00000568472 MT1BP07438 61 aa9.69□□□□□ -0.86
CLN3-234ENST00000568472 FCGBPQ9Y6R7 5405 aaPredicted RBP9.63□□□□□ -0.87
CLN3-234ENST00000568472 M0QZ58 72 aa9.6□□□□□ -0.87
CLN3-234ENST00000568472 ATP5EP56381 51 aaPredicted RBP9.58□□□□□ -0.88
CLN3-234ENST00000568472 SEC61GP60059 68 aa9.5□□□□□ -0.89
CLN3-234ENST00000568472 A6NN06 94 aa9.48□□□□□ -0.89
CLN3-234ENST00000568472 PLAC4Q8WY50 150 aa9.46□□□□□ -0.9
CLN3-234ENST00000568472 SERP1Q9Y6X1 66 aa9.46□□□□□ -0.9
CLN3-234ENST00000568472 TMEM258P61165 79 aa9.45□□□□□ -0.9
CLN3-234ENST00000568472 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.43□□□□□ -0.9
CLN3-234ENST00000568472 KRTAP10-5P60370 271 aa9.42□□□□□ -0.9
CLN3-234ENST00000568472 LINC01554Q52M75 96 aa9.42□□□□□ -0.9
CLN3-234ENST00000568472 PRO2289Q9P1D8 64 aa9.32□□□□□ -0.92
CLN3-234ENST00000568472 A0A1B0GU69 56 aa9.27□□□□□ -0.93
CLN3-234ENST00000568472 A0A1B0GU33 70 aa9.25□□□□□ -0.93
CLN3-234ENST00000568472 MACF1Q9UPN3 7388 aaKnown RBP9.24□□□□□ -0.93
CLN3-234ENST00000568472 KRTAP13-4Q3LI77 160 aa9.24□□□□□ -0.93
CLN3-234ENST00000568472 KRTAP9-7A8MTY7 169 aa9.2□□□□□ -0.94
CLN3-234ENST00000568472 MT1XP80297 61 aa9.19□□□□□ -0.94
CLN3-234ENST00000568472 PRR15LQ9BU68 103 aa9.16□□□□□ -0.94
CLN3-234ENST00000568472 LINC01558Q9Y6Z2 57 aa9.12□□□□□ -0.95
CLN3-234ENST00000568472 SPATA8Q6RVD6 105 aa9.09□□□□□ -0.95
CLN3-234ENST00000568472 SYNE2Q8WXH0 6885 aaKnown RBP9.03□□□□□ -0.96
CLN3-234ENST00000568472 A0A0D9SG42 100 aa9.03□□□□□ -0.96
CLN3-234ENST00000568472 SMIM26A0A096LP01 95 aa9.02□□□□□ -0.97
CLN3-234ENST00000568472 PCP4P48539 62 aa9.01□□□□□ -0.97
CLN3-234ENST00000568472 KRTAP6-3Q3LI67 103 aa9.01□□□□□ -0.97
CLN3-234ENST00000568472 CAMK2N1Q7Z7J9 78 aa8.98□□□□□ -0.97
CLN3-234ENST00000568472 KRTAP12-2P59991 146 aa8.96□□□□□ -0.98
CLN3-234ENST00000568472 V9GYY9 64 aa8.92□□□□□ -0.98
CLN3-234ENST00000568472 SPINT4Q6UDR6 99 aa8.91□□□□□ -0.98
CLN3-234ENST00000568472 KRTAP12-1P59990 96 aa8.88□□□□□ -0.99
CLN3-234ENST00000568472 UQCR11O14957 56 aa8.85□□□□□ -0.99
CLN3-234ENST00000568472 A8MU10 97 aa8.82□□□□□ -1
CLN3-234ENST00000568472 Q1T7F1 81 aa8.82□□□□□ -1
CLN3-234ENST00000568472 RPS28P62857 69 aaKnown RBP8.79□□□□□ -1
CLN3-234ENST00000568472 KRTAP10-12P60413 245 aa8.77□□□□□ -1.01
CLN3-234ENST00000568472 KRTAP5-9P26371 169 aa8.76□□□□□ -1.01
CLN3-234ENST00000568472 KRTAP10-7P60409 375 aaPredicted RBP8.76□□□□□ -1.01
CLN3-234ENST00000568472 KRTAP8-1Q8IUC2 63 aa8.7□□□□□ -1.02
CLN3-234ENST00000568472 KMT2DO14686 5537 aa8.7□□□□□ -1.02
CLN3-234ENST00000568472 PSPHP1O15172 72 aa8.68□□□□□ -1.02
CLN3-234ENST00000568472 MIR22HGQ0VDD5 57 aa8.65□□□□□ -1.02
CLN3-234ENST00000568472 KRTAP4-8A0A0G2JLE6 195 aa8.62□□□□□ -1.03
CLN3-234ENST00000568472 KRTAP4-8Q9BYQ9 185 aa8.62□□□□□ -1.03
CLN3-234ENST00000568472 MUC12Q9UKN1 5478 aa8.57□□□□□ -1.04
CLN3-234ENST00000568472 SPRR2FQ96RM1 72 aa8.57□□□□□ -1.04
CLN3-234ENST00000568472 K7ERS5 55 aa8.49□□□□□ -1.05
CLN3-234ENST00000568472 NEBP20929 6669 aa8.48□□□□□ -1.05
CLN3-234ENST00000568472 A6NED7 52 aa8.46□□□□□ -1.06
CLN3-234ENST00000568472 MDN1Q9NU22 5596 aa8.46□□□□□ -1.06
CLN3-234ENST00000568472 C10orf95Q9H7T3 257 aa8.44□□□□□ -1.06
CLN3-234ENST00000568472 TNP1P09430 55 aa8.41□□□□□ -1.06
CLN3-234ENST00000568472 SPRR2EP22531 72 aa8.35□□□□□ -1.07
CLN3-234ENST00000568472 SPRR2BP35325 72 aa8.35□□□□□ -1.07
CLN3-234ENST00000568472 SPRR2AP35326 72 aa8.35□□□□□ -1.07
CLN3-234ENST00000568472 LCE1AQ5T7P2 110 aa8.3□□□□□ -1.08
CLN3-234ENST00000568472 KRTAP19-7Q3SYF9 63 aa8.21□□□□□ -1.1
CLN3-234ENST00000568472 KRTAP25-1Q3LHN0 102 aa8.17□□□□□ -1.1
CLN3-234ENST00000568472 CDC42SE1Q9NRR8 79 aa8.17□□□□□ -1.1
CLN3-234ENST00000568472 MT1EP04732 61 aa8.13□□□□□ -1.11
CLN3-234ENST00000568472 LCE3AQ5TA76 89 aa8.13□□□□□ -1.11
CLN3-234ENST00000568472 KRTAP20-1Q3LI63 56 aa8.12□□□□□ -1.11
CLN3-234ENST00000568472 KRTAP19-5Q3LI72 72 aa8.11□□□□□ -1.11
CLN3-234ENST00000568472 SPRR2DP22532 72 aa8.07□□□□□ -1.12
CLN3-234ENST00000568472 KRTAP2-3P0C7H8 128 aa8.06□□□□□ -1.12
CLN3-234ENST00000568472 KRTAP2-4Q9BYR9 128 aa8.06□□□□□ -1.12
CLN3-234ENST00000568472 KRTAP19-3Q7Z4W3 81 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms