RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 MPLKIPQ8TAP9 179 aa3.76□□□□□ -1.81
SMG1-215ENST00000568239 PSPHP1O15172 72 aa3.75□□□□□ -1.81
SMG1-215ENST00000568239 LRP2P98164 4655 aa3.75□□□□□ -1.81
SMG1-215ENST00000568239 ACYP2P14621 99 aa3.74□□□□□ -1.81
SMG1-215ENST00000568239 TPRXLQ17RH7 258 aa3.74□□□□□ -1.81
SMG1-215ENST00000568239 CHKB-CPT1BH3BT56 60 aa3.73□□□□□ -1.81
SMG1-215ENST00000568239 DMAC1Q96GE9 116 aa3.73□□□□□ -1.81
SMG1-215ENST00000568239 PCLOQ9Y6V0 5065 aa3.69□□□□□ -1.82
SMG1-215ENST00000568239 LINC01554Q52M75 96 aa3.68□□□□□ -1.82
SMG1-215ENST00000568239 HERC1Q15751 4861 aa3.66□□□□□ -1.82
SMG1-215ENST00000568239 Q1T7F1 81 aa3.65□□□□□ -1.82
SMG1-215ENST00000568239 COX6B2Q6YFQ2 88 aa3.65□□□□□ -1.82
SMG1-215ENST00000568239 KRTAP3-1Q9BYR8 98 aa3.65□□□□□ -1.82
SMG1-215ENST00000568239 PRR15LQ9BU68 103 aa3.63□□□□□ -1.83
SMG1-215ENST00000568239 PRAC1Q96KF2 57 aa3.6□□□□□ -1.83
SMG1-215ENST00000568239 LINC01558Q9Y6Z2 57 aa3.6□□□□□ -1.83
SMG1-215ENST00000568239 A6NN06 94 aa3.59□□□□□ -1.83
SMG1-215ENST00000568239 SPTSSBQ8NFR3 76 aa3.59□□□□□ -1.84
SMG1-215ENST00000568239 A0A1B0GU69 56 aa3.58□□□□□ -1.84
SMG1-215ENST00000568239 Q5VV11 94 aa3.57□□□□□ -1.84
SMG1-215ENST00000568239 MUC2Q02817 5179 aa3.57□□□□□ -1.84
SMG1-215ENST00000568239 ADM2Q7Z4H4 148 aa3.56□□□□□ -1.84
SMG1-215ENST00000568239 HMCN2Q8NDA2 5059 aa3.55□□□□□ -1.84
SMG1-215ENST00000568239 H1FX-AS1Q4G0G2 97 aa3.55□□□□□ -1.84
SMG1-215ENST00000568239 KRTAP4-1Q9BYQ7 146 aa3.55□□□□□ -1.84
SMG1-215ENST00000568239 S4R3F8 94 aa3.55□□□□□ -1.84
SMG1-215ENST00000568239 A6NED7 52 aa3.54□□□□□ -1.84
SMG1-215ENST00000568239 MUC17Q685J3 4493 aa3.53□□□□□ -1.84
SMG1-215ENST00000568239 KRTAP23-1A1A580 65 aa3.51□□□□□ -1.85
SMG1-215ENST00000568239 A8MU10 97 aa3.48□□□□□ -1.85
SMG1-215ENST00000568239 CSAG1Q6PB30 78 aa3.47□□□□□ -1.85
SMG1-215ENST00000568239 UQCR11O14957 56 aa3.46□□□□□ -1.86
SMG1-215ENST00000568239 UBR4Q5T4S7 5183 aa3.45□□□□□ -1.86
SMG1-215ENST00000568239 LUZP6Q538Z0 58 aa3.45□□□□□ -1.86
SMG1-215ENST00000568239 LOC100996750A0A140TA64 210 aa3.44□□□□□ -1.86
SMG1-215ENST00000568239 A0A1B0GU33 70 aa3.44□□□□□ -1.86
SMG1-215ENST00000568239 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
SMG1-215ENST00000568239 MIR22HGQ0VDD5 57 aa3.43□□□□□ -1.86
SMG1-215ENST00000568239 CDC42SE1Q9NRR8 79 aa3.43□□□□□ -1.86
SMG1-215ENST00000568239 RNF213Q63HN8 5207 aa3.43□□□□□ -1.86
SMG1-215ENST00000568239 FAT4Q6V0I7 4981 aa3.42□□□□□ -1.86
SMG1-215ENST00000568239 KRTAP19-2Q3LHN2 52 aa3.41□□□□□ -1.86
SMG1-215ENST00000568239 P0C880 135 aa3.41□□□□□ -1.86
SMG1-215ENST00000568239 SPATA8Q6RVD6 105 aa3.41□□□□□ -1.86
SMG1-215ENST00000568239 KRTAP10-6P60371 365 aaPredicted RBP3.4□□□□□ -1.86
SMG1-215ENST00000568239 ROMO1P60602 79 aa3.39□□□□□ -1.87
SMG1-215ENST00000568239 H0YAA0 97 aa3.38□□□□□ -1.87
SMG1-215ENST00000568239 A0A0D9SG42 100 aa3.35□□□□□ -1.87
SMG1-215ENST00000568239 K7ERS5 55 aa3.35□□□□□ -1.87
SMG1-215ENST00000568239 FLGP20930 4061 aaPredicted RBP3.34□□□□□ -1.87
SMG1-215ENST00000568239 M0R2T5 61 aa3.34□□□□□ -1.87
SMG1-215ENST00000568239 KRTAP13-4Q3LI77 160 aa3.34□□□□□ -1.87
SMG1-215ENST00000568239 R4GN34 69 aa3.31□□□□□ -1.88
SMG1-215ENST00000568239 M0QZ58 72 aa3.3□□□□□ -1.88
SMG1-215ENST00000568239 CAMK2N1Q7Z7J9 78 aa3.29□□□□□ -1.88
SMG1-215ENST00000568239 MT1HP80294 61 aa3.28□□□□□ -1.88
SMG1-215ENST00000568239 SPINT4Q6UDR6 99 aa3.26□□□□□ -1.89
SMG1-215ENST00000568239 KRTAP12-2P59991 146 aa3.22□□□□□ -1.89
SMG1-215ENST00000568239 LCE4AQ5TA78 99 aa3.22□□□□□ -1.89
SMG1-215ENST00000568239 NDUFAF8A1L188 74 aa3.21□□□□□ -1.9
SMG1-215ENST00000568239 KRTAP12-1P59990 96 aa3.2□□□□□ -1.9
SMG1-215ENST00000568239 KRTAP10-10P60014 251 aa3.19□□□□□ -1.9
SMG1-215ENST00000568239 CRIPTQ9P021 101 aa3.18□□□□□ -1.9
SMG1-215ENST00000568239 MT2AP02795 61 aa3.16□□□□□ -1.9
SMG1-215ENST00000568239 MT1FP04733 61 aa3.16□□□□□ -1.9
SMG1-215ENST00000568239 KRTAP9-8Q9BYQ0 159 aa3.16□□□□□ -1.9
SMG1-215ENST00000568239 KRTAP15-1Q3LI76 137 aa3.15□□□□□ -1.91
SMG1-215ENST00000568239 KRTAP9-6A0A140TA67 174 aa3.11□□□□□ -1.91
SMG1-215ENST00000568239 KRTAP9-7A8MTY7 169 aa3.11□□□□□ -1.91
SMG1-215ENST00000568239 KRTAP19-1Q8IUB9 90 aa3.11□□□□□ -1.91
SMG1-215ENST00000568239 SPRR2GQ9BYE4 73 aa3.1□□□□□ -1.91
SMG1-215ENST00000568239 KRTAP25-1Q3LHN0 102 aa3.09□□□□□ -1.91
SMG1-215ENST00000568239 PLAC4Q8WY50 150 aa3.08□□□□□ -1.92
SMG1-215ENST00000568239 KRTAP9-3Q9BYQ3 159 aa3.03□□□□□ -1.92
SMG1-215ENST00000568239 C10orf95Q9H7T3 257 aa3.03□□□□□ -1.92
SMG1-215ENST00000568239 KRTAP9-9Q9BYP9 154 aa3.03□□□□□ -1.93
SMG1-215ENST00000568239 KRTAP9-4Q9BYQ2 154 aa3.03□□□□□ -1.93
SMG1-215ENST00000568239 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
SMG1-215ENST00000568239 KRTAP19-4Q3LI73 84 aa3□□□□□ -1.93
SMG1-215ENST00000568239 USH2AO75445 5202 aa2.98□□□□□ -1.93
SMG1-215ENST00000568239 MT1BP07438 61 aa2.98□□□□□ -1.93
SMG1-215ENST00000568239 TNP1P09430 55 aa2.94□□□□□ -1.94
SMG1-215ENST00000568239 FSIP2Q5CZC0 6907 aa2.93□□□□□ -1.94
SMG1-215ENST00000568239 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.92□□□□□ -1.94
SMG1-215ENST00000568239 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
SMG1-215ENST00000568239 KRTAP9-2Q9BYQ4 174 aa2.91□□□□□ -1.94
SMG1-215ENST00000568239 KRTAP10-5P60370 271 aa2.9□□□□□ -1.94
SMG1-215ENST00000568239 MT1XP80297 61 aa2.9□□□□□ -1.94
SMG1-215ENST00000568239 KRTAP5-3Q6L8H2 238 aa2.9□□□□□ -1.94
SMG1-215ENST00000568239 PRO2289Q9P1D8 64 aa2.9□□□□□ -1.95
SMG1-215ENST00000568239 KRTAP4-8Q9BYQ9 185 aa2.88□□□□□ -1.95
SMG1-215ENST00000568239 PP632Q6XCG6 107 aa2.85□□□□□ -1.95
SMG1-215ENST00000568239 LCE3BQ5TA77 95 aa2.85□□□□□ -1.95
SMG1-215ENST00000568239 KRTAP10-7P60409 375 aaPredicted RBP2.82□□□□□ -1.96
SMG1-215ENST00000568239 LCE3AQ5TA76 89 aa2.81□□□□□ -1.96
SMG1-215ENST00000568239 LCE5AQ5TCM9 118 aa2.81□□□□□ -1.96
SMG1-215ENST00000568239 SSPOA2VEC9 5147 aa2.8□□□□□ -1.96
SMG1-215ENST00000568239 KRTAP10-12P60413 245 aa2.79□□□□□ -1.96
SMG1-215ENST00000568239 KMT2DO14686 5537 aa2.78□□□□□ -1.96
SMG1-215ENST00000568239 KRTAP4-8A0A0G2JLE6 195 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms