RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 IGHV6-1A0A0B4J1U7 121 aa3.4□□□□□ -1.87
VPS39-209ENST00000568029 MMP24-AS1A0A0U1RRL7 71 aa3.4□□□□□ -1.87
VPS39-209ENST00000568029 H0Y9P7 68 aa3.4□□□□□ -1.87
VPS39-209ENST00000568029 Q5XG85 94 aa3.39□□□□□ -1.87
VPS39-209ENST00000568029 ZCCHC13Q8WW36 166 aaKnown RBP3.39□□□□□ -1.87
VPS39-209ENST00000568029 LINC00208Q96KT6 92 aa3.39□□□□□ -1.87
VPS39-209ENST00000568029 CRCT1Q9UGL9 99 aa3.39□□□□□ -1.87
VPS39-209ENST00000568029 C8orf87E5RJ46 101 aa3.38□□□□□ -1.87
VPS39-209ENST00000568029 KRTAP1-4P0C5Y4 121 aa3.38□□□□□ -1.87
VPS39-209ENST00000568029 LCE3CQ5T5A8 94 aa3.38□□□□□ -1.87
VPS39-209ENST00000568029 SPINK6Q6UWN8 80 aa3.38□□□□□ -1.87
VPS39-209ENST00000568029 MRPL34Q9BQ48 92 aaKnown RBP3.38□□□□□ -1.87
VPS39-209ENST00000568029 LIMD2Q9BT23 127 aa3.38□□□□□ -1.87
VPS39-209ENST00000568029 TRAV22A0A0B4J277 110 aa3.37□□□□□ -1.87
VPS39-209ENST00000568029 NDUFS5O43920 106 aa3.37□□□□□ -1.87
VPS39-209ENST00000568029 KRTAP13-2Q52LG2 175 aa3.37□□□□□ -1.87
VPS39-209ENST00000568029 C1orf64Q8NEQ6 169 aa3.37□□□□□ -1.87
VPS39-209ENST00000568029 SMIM26A0A096LP01 95 aa3.36□□□□□ -1.87
VPS39-209ENST00000568029 SPINK1P00995 79 aa3.35□□□□□ -1.87
VPS39-209ENST00000568029 SPAG11AQ6PDA7 123 aa3.35□□□□□ -1.87
VPS39-209ENST00000568029 A8MU10 97 aa3.34□□□□□ -1.87
VPS39-209ENST00000568029 LINC00313P59037 77 aa3.34□□□□□ -1.87
VPS39-209ENST00000568029 C1orf195Q5TG92 126 aa3.34□□□□□ -1.87
VPS39-209ENST00000568029 SPANXA2-OT1Q8N9U9 137 aa3.34□□□□□ -1.87
VPS39-209ENST00000568029 CYP4F30PQ9H0H9 118 aa3.34□□□□□ -1.87
VPS39-209ENST00000568029 MUC17Q685J3 4493 aa3.33□□□□□ -1.88
VPS39-209ENST00000568029 RPS29P62273 56 aaKnown RBP3.32□□□□□ -1.88
VPS39-209ENST00000568029 LINC00304Q8N9R0 145 aa3.32□□□□□ -1.88
VPS39-209ENST00000568029 LOC101927531A0A1B0GV80 90 aa3.31□□□□□ -1.88
VPS39-209ENST00000568029 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
VPS39-209ENST00000568029 PCOTHQ58A44 107 aa3.28□□□□□ -1.88
VPS39-209ENST00000568029 C4orf26Q17RF5 130 aa3.27□□□□□ -1.89
VPS39-209ENST00000568029 V9GYY9 64 aa3.27□□□□□ -1.89
VPS39-209ENST00000568029 KRTAP10-8P60410 259 aa3.26□□□□□ -1.89
VPS39-209ENST00000568029 Q5W150 140 aa3.26□□□□□ -1.89
VPS39-209ENST00000568029 FP248Q71RG6 208 aaPredicted RBP3.26□□□□□ -1.89
VPS39-209ENST00000568029 Q1T7F1 81 aa3.25□□□□□ -1.89
VPS39-209ENST00000568029 KRTAP13-3Q3SY46 172 aa3.25□□□□□ -1.89
VPS39-209ENST00000568029 COA5Q86WW8 74 aa3.24□□□□□ -1.89
VPS39-209ENST00000568029 ACYP2P14621 99 aa3.23□□□□□ -1.89
VPS39-209ENST00000568029 RETNLBQ9BQ08 111 aa3.22□□□□□ -1.89
VPS39-209ENST00000568029 HRES1P13985 223 aa3.21□□□□□ -1.9
VPS39-209ENST00000568029 KRTAP5-4Q6L8H1 288 aa3.21□□□□□ -1.9
VPS39-209ENST00000568029 SYNE2Q8WXH0 6885 aaKnown RBP3.2□□□□□ -1.9
VPS39-209ENST00000568029 A8MUU9 505 aa3.19□□□□□ -1.9
VPS39-209ENST00000568029 CHKB-CPT1BH3BT56 60 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 KRTAP5-9P26371 169 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 C7orf65Q6ZTY9 151 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 DMAC1Q96GE9 116 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 C20orf166-AS1Q96NR2 134 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 SSPOA2VEC9 5147 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 USH2AO75445 5202 aa3.18□□□□□ -1.9
VPS39-209ENST00000568029 C9orf92A6NGG3 77 aa3.17□□□□□ -1.9
VPS39-209ENST00000568029 KRTAP9-6A8MVA2 160 aa3.16□□□□□ -1.9
VPS39-209ENST00000568029 PSPHP1O15172 72 aa3.16□□□□□ -1.9
VPS39-209ENST00000568029 PRR15LQ9BU68 103 aa3.16□□□□□ -1.9
VPS39-209ENST00000568029 A8MUN3 132 aa3.15□□□□□ -1.91
VPS39-209ENST00000568029 PRO0628Q9UI54 55 aa3.15□□□□□ -1.91
VPS39-209ENST00000568029 LINC01558Q9Y6Z2 57 aa3.15□□□□□ -1.91
VPS39-209ENST00000568029 MACF1Q9UPN3 7388 aaKnown RBP3.14□□□□□ -1.91
VPS39-209ENST00000568029 BRK1Q8WUW1 75 aa3.14□□□□□ -1.91
VPS39-209ENST00000568029 Q5VV11 94 aa3.12□□□□□ -1.91
VPS39-209ENST00000568029 ATP11AUNQ6ZP68 121 aa3.12□□□□□ -1.91
VPS39-209ENST00000568029 SPTSSBQ8NFR3 76 aa3.12□□□□□ -1.91
VPS39-209ENST00000568029 KRTAP4-1Q9BYQ7 146 aa3.11□□□□□ -1.91
VPS39-209ENST00000568029 A6NED7 52 aa3.1□□□□□ -1.91
VPS39-209ENST00000568029 SPINK7P58062 85 aa3.1□□□□□ -1.91
VPS39-209ENST00000568029 FCGBPQ9Y6R7 5405 aaPredicted RBP3.09□□□□□ -1.91
VPS39-209ENST00000568029 LCE3EQ5T5B0 92 aa3.08□□□□□ -1.92
VPS39-209ENST00000568029 A0A1B0GU69 56 aa3.07□□□□□ -1.92
VPS39-209ENST00000568029 SEC61GP60059 68 aa3.07□□□□□ -1.92
VPS39-209ENST00000568029 RPL37P61927 97 aaKnown RBP3.07□□□□□ -1.92
VPS39-209ENST00000568029 COX6B2Q6YFQ2 88 aa3.06□□□□□ -1.92
VPS39-209ENST00000568029 CDC42SE1Q9NRR8 79 aa3.05□□□□□ -1.92
VPS39-209ENST00000568029 KRTAP12-2P59991 146 aa3.04□□□□□ -1.92
VPS39-209ENST00000568029 MT1HP80294 61 aa3.03□□□□□ -1.92
VPS39-209ENST00000568029 KRTAP19-2Q3LHN2 52 aa3.03□□□□□ -1.92
VPS39-209ENST00000568029 TPRXLQ17RH7 258 aa3.02□□□□□ -1.93
VPS39-209ENST00000568029 LCA10Q71F78 164 aa3.02□□□□□ -1.93
VPS39-209ENST00000568029 FLGP20930 4061 aaPredicted RBP3.02□□□□□ -1.93
VPS39-209ENST00000568029 UQCR11O14957 56 aa3.01□□□□□ -1.93
VPS39-209ENST00000568029 CAMK2N1Q7Z7J9 78 aa3.01□□□□□ -1.93
VPS39-209ENST00000568029 NEBP20929 6669 aa3.01□□□□□ -1.93
VPS39-209ENST00000568029 PMAIP1Q13794 54 aa3□□□□□ -1.93
VPS39-209ENST00000568029 SPATA8Q6RVD6 105 aa2.99□□□□□ -1.93
VPS39-209ENST00000568029 MIR22HGQ0VDD5 57 aa2.98□□□□□ -1.93
VPS39-209ENST00000568029 H1FX-AS1Q4G0G2 97 aa2.96□□□□□ -1.94
VPS39-209ENST00000568029 RBM12B-AS1Q9P1G2 102 aa2.96□□□□□ -1.94
VPS39-209ENST00000568029 S4R3F8 94 aa2.95□□□□□ -1.94
VPS39-209ENST00000568029 A0A1B0GU33 70 aa2.94□□□□□ -1.94
VPS39-209ENST00000568029 A6NN06 94 aa2.92□□□□□ -1.94
VPS39-209ENST00000568029 OBSCNQ5VST9 7968 aa2.91□□□□□ -1.94
VPS39-209ENST00000568029 CSAG1Q6PB30 78 aa2.9□□□□□ -1.95
VPS39-209ENST00000568029 MUC12Q9UKN1 5478 aa2.89□□□□□ -1.95
VPS39-209ENST00000568029 KTN1-AS1Q86SY8 53 aa2.89□□□□□ -1.95
VPS39-209ENST00000568029 K7ERS5 55 aa2.88□□□□□ -1.95
VPS39-209ENST00000568029 H0YAA0 97 aa2.86□□□□□ -1.95
VPS39-209ENST00000568029 M0R2T5 61 aa2.86□□□□□ -1.95
VPS39-209ENST00000568029 ADM2Q7Z4H4 148 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms