RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	LINC00313	P59037	77 aa		3.6	□□□□□ -1.83
SF3B3-209	ENST00000567635	C7orf65	Q6ZTY9	151 aa		3.6	□□□□□ -1.83
SF3B3-209	ENST00000567635		A8MUN3	132 aa		3.59	□□□□□ -1.83
SF3B3-209	ENST00000567635	CHKB-CPT1B	H3BT56	60 aa		3.59	□□□□□ -1.83
SF3B3-209	ENST00000567635	DSCR10	P59022	87 aa		3.59	□□□□□ -1.83
SF3B3-209	ENST00000567635	LCA10	Q71F78	164 aa		3.59	□□□□□ -1.83
SF3B3-209	ENST00000567635	ZCCHC13	Q8WW36	166 aa	Known RBP	3.59	□□□□□ -1.83
SF3B3-209	ENST00000567635	KRTAP10-6	P60371	365 aa	Predicted RBP	3.58	□□□□□ -1.84
SF3B3-209	ENST00000567635		Q5VV11	94 aa		3.58	□□□□□ -1.84
SF3B3-209	ENST00000567635		A6NN06	94 aa		3.57	□□□□□ -1.84
SF3B3-209	ENST00000567635	HCG22	E2RYF7	251 aa		3.57	□□□□□ -1.84
SF3B3-209	ENST00000567635	DEFB116	Q30KQ4	102 aa		3.57	□□□□□ -1.84
SF3B3-209	ENST00000567635	SPTSSB	Q8NFR3	76 aa		3.57	□□□□□ -1.84
SF3B3-209	ENST00000567635	KRTAP4-9	Q9BYQ8	210 aa		3.57	□□□□□ -1.84
SF3B3-209	ENST00000567635	LINC00472	Q9H8W2	130 aa		3.57	□□□□□ -1.84
SF3B3-209	ENST00000567635	MP68	P56378	58 aa		3.56	□□□□□ -1.84
SF3B3-209	ENST00000567635	SPANXA2-OT1	Q8N9U9	137 aa		3.56	□□□□□ -1.84
SF3B3-209	ENST00000567635		A6NED7	52 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635	KRTAP16-1	A8MUX0	517 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635	C8orf87	E5RJ46	101 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635		H3BPC8	53 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635	NOTCH2NL	Q7Z3S9	236 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635	PRR15L	Q9BU68	103 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635	CDC42SE1	Q9NRR8	79 aa		3.55	□□□□□ -1.84
SF3B3-209	ENST00000567635	IGHV6-1	A0A0B4J1U7	121 aa		3.54	□□□□□ -1.84
SF3B3-209	ENST00000567635	LOC101927531	A0A1B0GV80	90 aa		3.54	□□□□□ -1.84
SF3B3-209	ENST00000567635		Q8N9P0	234 aa	Predicted RBP	3.54	□□□□□ -1.84
SF3B3-209	ENST00000567635	LINC00208	Q96KT6	92 aa		3.54	□□□□□ -1.84
SF3B3-209	ENST00000567635	LCE5A	Q5TCM9	118 aa		3.53	□□□□□ -1.84
SF3B3-209	ENST00000567635		Q8N9L7	120 aa		3.53	□□□□□ -1.84
SF3B3-209	ENST00000567635	KRTAP9-3	Q9BYQ3	159 aa		3.53	□□□□□ -1.84
SF3B3-209	ENST00000567635	KRTAP3-1	Q9BYR8	98 aa		3.53	□□□□□ -1.84
SF3B3-209	ENST00000567635	FLG	P20930	4061 aa	Predicted RBP	3.53	□□□□□ -1.84
SF3B3-209	ENST00000567635		A0A1B0GVX0	72 aa		3.52	□□□□□ -1.85
SF3B3-209	ENST00000567635		A8MWP4	228 aa		3.51	□□□□□ -1.85
SF3B3-209	ENST00000567635	CASC2	Q6XLA1	102 aa		3.5	□□□□□ -1.85
SF3B3-209	ENST00000567635		K7EQZ3	153 aa		3.49	□□□□□ -1.85
SF3B3-209	ENST00000567635		A8MU10	97 aa		3.47	□□□□□ -1.85
SF3B3-209	ENST00000567635	HRES1	P13985	223 aa		3.47	□□□□□ -1.85
SF3B3-209	ENST00000567635	LINC01558	Q9Y6Z2	57 aa		3.47	□□□□□ -1.85
SF3B3-209	ENST00000567635		A0A0A0MQY5	61 aa		3.46	□□□□□ -1.86
SF3B3-209	ENST00000567635	KRTAP9-8	Q9BYQ0	159 aa		3.46	□□□□□ -1.86
SF3B3-209	ENST00000567635	KRTAP4-11	Q9BYQ6	195 aa		3.46	□□□□□ -1.86
SF3B3-209	ENST00000567635	C8orf17	Q9NRJ1	99 aa		3.46	□□□□□ -1.86
SF3B3-209	ENST00000567635		H0Y9P7	68 aa		3.45	□□□□□ -1.86
SF3B3-209	ENST00000567635	LINC01554	Q52M75	96 aa		3.45	□□□□□ -1.86
SF3B3-209	ENST00000567635	COA5	Q86WW8	74 aa		3.45	□□□□□ -1.86
SF3B3-209	ENST00000567635	MMP24-AS1	A0A0U1RRL7	71 aa		3.44	□□□□□ -1.86
SF3B3-209	ENST00000567635	KRTAP23-1	A1A580	65 aa		3.44	□□□□□ -1.86
SF3B3-209	ENST00000567635	SPINK7	P58062	85 aa		3.44	□□□□□ -1.86
SF3B3-209	ENST00000567635	WFDC13	Q8IUB5	93 aa		3.44	□□□□□ -1.86
SF3B3-209	ENST00000567635	KRTAP4-2	Q9BYR5	136 aa		3.44	□□□□□ -1.86
SF3B3-209	ENST00000567635	MRPL34	Q9BQ48	92 aa	Known RBP	3.41	□□□□□ -1.86
SF3B3-209	ENST00000567635	MT2A	P02795	61 aa		3.4	□□□□□ -1.87
SF3B3-209	ENST00000567635	TP53AIP1	Q9HCN2	124 aa		3.4	□□□□□ -1.87
SF3B3-209	ENST00000567635	KRTAP10-10	P60014	251 aa		3.39	□□□□□ -1.87
SF3B3-209	ENST00000567635	MT1F	P04733	61 aa		3.37	□□□□□ -1.87
SF3B3-209	ENST00000567635	PRAC1	Q96KF2	57 aa		3.35	□□□□□ -1.87
SF3B3-209	ENST00000567635		Q5W150	140 aa		3.34	□□□□□ -1.87
SF3B3-209	ENST00000567635	IGKV2D-30	A0A075B6S6	120 aa		3.33	□□□□□ -1.88
SF3B3-209	ENST00000567635	IGKV2-30	P06310	120 aa		3.33	□□□□□ -1.88
SF3B3-209	ENST00000567635	H1FX-AS1	Q4G0G2	97 aa		3.33	□□□□□ -1.88
SF3B3-209	ENST00000567635	SYNE2	Q8WXH0	6885 aa	Known RBP	3.33	□□□□□ -1.88
SF3B3-209	ENST00000567635	SPATA8	Q6RVD6	105 aa		3.31	□□□□□ -1.88
SF3B3-209	ENST00000567635	ACYP2	P14621	99 aa		3.28	□□□□□ -1.88
SF3B3-209	ENST00000567635	ADM2	Q7Z4H4	148 aa		3.28	□□□□□ -1.88
SF3B3-209	ENST00000567635	MACF1	Q9UPN3	7388 aa	Known RBP	3.28	□□□□□ -1.88
SF3B3-209	ENST00000567635		A0A1B0GU69	56 aa		3.27	□□□□□ -1.89
SF3B3-209	ENST00000567635	UQCR11	O14957	56 aa		3.27	□□□□□ -1.89
SF3B3-209	ENST00000567635	MIR22HG	Q0VDD5	57 aa		3.27	□□□□□ -1.89
SF3B3-209	ENST00000567635	SSPO	A2VEC9	5147 aa		3.27	□□□□□ -1.89
SF3B3-209	ENST00000567635	USH2A	O75445	5202 aa		3.26	□□□□□ -1.89
SF3B3-209	ENST00000567635	CSAG1	Q6PB30	78 aa		3.26	□□□□□ -1.89
SF3B3-209	ENST00000567635	KRTAP19-6	Q3LI70	58 aa		3.22	□□□□□ -1.89
SF3B3-209	ENST00000567635	ROMO1	P60602	79 aa		3.21	□□□□□ -1.9
SF3B3-209	ENST00000567635	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.21	□□□□□ -1.9
SF3B3-209	ENST00000567635	KRTAP15-1	Q3LI76	137 aa		3.2	□□□□□ -1.9
SF3B3-209	ENST00000567635	DMAC1	Q96GE9	116 aa		3.2	□□□□□ -1.9
SF3B3-209	ENST00000567635		S4R3F8	94 aa		3.2	□□□□□ -1.9
SF3B3-209	ENST00000567635	KRTAP25-1	Q3LHN0	102 aa		3.18	□□□□□ -1.9
SF3B3-209	ENST00000567635	NEB	P20929	6669 aa		3.17	□□□□□ -1.9
SF3B3-209	ENST00000567635	SPRR2G	Q9BYE4	73 aa		3.11	□□□□□ -1.91
SF3B3-209	ENST00000567635		K7ERS5	55 aa		3.1	□□□□□ -1.91
SF3B3-209	ENST00000567635	KRTAP19-8	Q3LI54	63 aa		3.1	□□□□□ -1.91
SF3B3-209	ENST00000567635	MT1B	P07438	61 aa		3.09	□□□□□ -1.91
SF3B3-209	ENST00000567635	KRTAP6-3	Q3LI67	103 aa		3.08	□□□□□ -1.92
SF3B3-209	ENST00000567635	CRIPT	Q9P021	101 aa		3.08	□□□□□ -1.92
SF3B3-209	ENST00000567635		P0C880	135 aa		3.05	□□□□□ -1.92
SF3B3-209	ENST00000567635		H0YAA0	97 aa		3.04	□□□□□ -1.92
SF3B3-209	ENST00000567635	KRTAP10-5	P60370	271 aa		3.03	□□□□□ -1.92
SF3B3-209	ENST00000567635	SPINT4	Q6UDR6	99 aa		3.03	□□□□□ -1.92
SF3B3-209	ENST00000567635	KRTAP20-1	Q3LI63	56 aa		3.02	□□□□□ -1.93
SF3B3-209	ENST00000567635		A0A1B0GU33	70 aa		3	□□□□□ -1.93
SF3B3-209	ENST00000567635	LUZP6	Q538Z0	58 aa		3	□□□□□ -1.93
SF3B3-209	ENST00000567635	MUC12	Q9UKN1	5478 aa		2.98	□□□□□ -1.93
SF3B3-209	ENST00000567635	NDUFAF8	A1L188	74 aa		2.97	□□□□□ -1.93
SF3B3-209	ENST00000567635	KRTAP5-3	Q6L8H2	238 aa		2.94	□□□□□ -1.94
SF3B3-209	ENST00000567635	PLAC4	Q8WY50	150 aa		2.94	□□□□□ -1.94
SF3B3-209	ENST00000567635		R4GN34	69 aa		2.94	□□□□□ -1.94
SF3B3-209	ENST00000567635	PRO2289	Q9P1D8	64 aa		2.93	□□□□□ -1.94

Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms