RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 KRTAP9-6A0A140TA67 174 aa9.12□□□□□ -0.95
CLN3-225ENST00000566824 CSAG1Q6PB30 78 aa9.12□□□□□ -0.95
CLN3-225ENST00000566824 SMIM20Q8N5G0 67 aa9.12□□□□□ -0.95
CLN3-225ENST00000566824 CRCT1Q9UGL9 99 aa9.1□□□□□ -0.95
CLN3-225ENST00000566824 A8MUN3 132 aa9.06□□□□□ -0.96
CLN3-225ENST00000566824 SSPOA2VEC9 5147 aa9.02□□□□□ -0.97
CLN3-225ENST00000566824 SNURFQ9Y675 71 aa9.02□□□□□ -0.97
CLN3-225ENST00000566824 DMAC1Q96GE9 116 aa9□□□□□ -0.97
CLN3-225ENST00000566824 SERP2Q8N6R1 65 aa8.99□□□□□ -0.97
CLN3-225ENST00000566824 NDUFC1O43677 76 aa8.97□□□□□ -0.97
CLN3-225ENST00000566824 C20orf197Q8N268 126 aa8.94□□□□□ -0.98
CLN3-225ENST00000566824 KRTAP19-1Q8IUB9 90 aa8.91□□□□□ -0.98
CLN3-225ENST00000566824 COX7CP15954 63 aa8.81□□□□□ -1
CLN3-225ENST00000566824 H0YAA0 97 aa8.8□□□□□ -1
CLN3-225ENST00000566824 ACYP2P14621 99 aa8.8□□□□□ -1
CLN3-225ENST00000566824 ADM2Q7Z4H4 148 aa8.79□□□□□ -1
CLN3-225ENST00000566824 SPRR2GQ9BYE4 73 aa8.79□□□□□ -1
CLN3-225ENST00000566824 SPANXA2-OT1Q8N9U9 137 aa8.76□□□□□ -1.01
CLN3-225ENST00000566824 CYSTM1Q9H1C7 97 aa8.76□□□□□ -1.01
CLN3-225ENST00000566824 FCGBPQ9Y6R7 5405 aaPredicted RBP8.73□□□□□ -1.01
CLN3-225ENST00000566824 MT1BP07438 61 aa8.7□□□□□ -1.02
CLN3-225ENST00000566824 KRTAP19-8Q3LI54 63 aa8.69□□□□□ -1.02
CLN3-225ENST00000566824 P0C880 135 aa8.68□□□□□ -1.02
CLN3-225ENST00000566824 KRTAP19-6Q3LI70 58 aa8.68□□□□□ -1.02
CLN3-225ENST00000566824 KRTAP3-2Q9BYR7 98 aa8.68□□□□□ -1.02
CLN3-225ENST00000566824 ANAPC13Q9BS18 74 aa8.67□□□□□ -1.02
CLN3-225ENST00000566824 CRIPTQ9P021 101 aa8.67□□□□□ -1.02
CLN3-225ENST00000566824 CHKB-CPT1BH3BT56 60 aa8.63□□□□□ -1.03
CLN3-225ENST00000566824 H7BZZ5 65 aa8.63□□□□□ -1.03
CLN3-225ENST00000566824 Q5VV11 94 aa8.61□□□□□ -1.03
CLN3-225ENST00000566824 CCDC179H3BU77 68 aa8.57□□□□□ -1.04
CLN3-225ENST00000566824 SPTSSBQ8NFR3 76 aa8.56□□□□□ -1.04
CLN3-225ENST00000566824 COA5Q86WW8 74 aa8.54□□□□□ -1.04
CLN3-225ENST00000566824 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.48□□□□□ -1.05
CLN3-225ENST00000566824 R4GN34 69 aa8.48□□□□□ -1.05
CLN3-225ENST00000566824 M0QZ58 72 aa8.46□□□□□ -1.06
CLN3-225ENST00000566824 A6NN06 94 aa8.37□□□□□ -1.07
CLN3-225ENST00000566824 KRTAP10-5P60370 271 aa8.37□□□□□ -1.07
CLN3-225ENST00000566824 LINC01554Q52M75 96 aa8.34□□□□□ -1.07
CLN3-225ENST00000566824 MACF1Q9UPN3 7388 aaKnown RBP8.31□□□□□ -1.08
CLN3-225ENST00000566824 KRTAP13-4Q3LI77 160 aa8.29□□□□□ -1.08
CLN3-225ENST00000566824 PCP4P48539 62 aa8.26□□□□□ -1.09
CLN3-225ENST00000566824 PLAC4Q8WY50 150 aa8.26□□□□□ -1.09
CLN3-225ENST00000566824 KRTAP9-7A8MTY7 169 aa8.25□□□□□ -1.09
CLN3-225ENST00000566824 MT1XP80297 61 aa8.23□□□□□ -1.09
CLN3-225ENST00000566824 ATP5EP56381 51 aaPredicted RBP8.2□□□□□ -1.1
CLN3-225ENST00000566824 SYNE2Q8WXH0 6885 aaKnown RBP8.18□□□□□ -1.1
CLN3-225ENST00000566824 TMEM258P61165 79 aa8.16□□□□□ -1.1
CLN3-225ENST00000566824 SEC61GP60059 68 aa8.15□□□□□ -1.1
CLN3-225ENST00000566824 SERP1Q9Y6X1 66 aa8.15□□□□□ -1.1
CLN3-225ENST00000566824 PRO2289Q9P1D8 64 aa8.08□□□□□ -1.12
CLN3-225ENST00000566824 A0A1B0GU33 70 aa8.07□□□□□ -1.12
CLN3-225ENST00000566824 SPATA8Q6RVD6 105 aa8.07□□□□□ -1.12
CLN3-225ENST00000566824 A0A1B0GU69 56 aa8.05□□□□□ -1.12
CLN3-225ENST00000566824 A0A0D9SG42 100 aa8.01□□□□□ -1.13
CLN3-225ENST00000566824 KRTAP6-3Q3LI67 103 aa8.01□□□□□ -1.13
CLN3-225ENST00000566824 LINC01558Q9Y6Z2 57 aa7.95□□□□□ -1.14
CLN3-225ENST00000566824 KMT2DO14686 5537 aa7.93□□□□□ -1.14
CLN3-225ENST00000566824 KRTAP12-2P59991 146 aa7.89□□□□□ -1.15
CLN3-225ENST00000566824 KRTAP10-7P60409 375 aaPredicted RBP7.88□□□□□ -1.15
CLN3-225ENST00000566824 A8MU10 97 aa7.87□□□□□ -1.15
CLN3-225ENST00000566824 KRTAP12-1P59990 96 aa7.86□□□□□ -1.15
CLN3-225ENST00000566824 PRR15LQ9BU68 103 aa7.85□□□□□ -1.15
CLN3-225ENST00000566824 CAMK2N1Q7Z7J9 78 aa7.84□□□□□ -1.15
CLN3-225ENST00000566824 SPINT4Q6UDR6 99 aa7.83□□□□□ -1.16
CLN3-225ENST00000566824 KRTAP4-8A0A0G2JLE6 195 aa7.79□□□□□ -1.16
CLN3-225ENST00000566824 KRTAP5-9P26371 169 aa7.79□□□□□ -1.16
CLN3-225ENST00000566824 KRTAP4-8Q9BYQ9 185 aa7.79□□□□□ -1.16
CLN3-225ENST00000566824 SMIM26A0A096LP01 95 aa7.78□□□□□ -1.16
CLN3-225ENST00000566824 KRTAP10-12P60413 245 aa7.78□□□□□ -1.16
CLN3-225ENST00000566824 MUC12Q9UKN1 5478 aa7.76□□□□□ -1.17
CLN3-225ENST00000566824 KRTAP8-1Q8IUC2 63 aa7.71□□□□□ -1.18
CLN3-225ENST00000566824 NEBP20929 6669 aa7.67□□□□□ -1.18
CLN3-225ENST00000566824 Q1T7F1 81 aa7.64□□□□□ -1.19
CLN3-225ENST00000566824 SPRR2FQ96RM1 72 aa7.64□□□□□ -1.19
CLN3-225ENST00000566824 UQCR11O14957 56 aa7.63□□□□□ -1.19
CLN3-225ENST00000566824 PSPHP1O15172 72 aa7.63□□□□□ -1.19
CLN3-225ENST00000566824 MDN1Q9NU22 5596 aa7.62□□□□□ -1.19
CLN3-225ENST00000566824 V9GYY9 64 aa7.58□□□□□ -1.2
CLN3-225ENST00000566824 RPS28P62857 69 aaKnown RBP7.52□□□□□ -1.2
CLN3-225ENST00000566824 MIR22HGQ0VDD5 57 aa7.52□□□□□ -1.2
CLN3-225ENST00000566824 C10orf95Q9H7T3 257 aa7.52□□□□□ -1.21
CLN3-225ENST00000566824 SPRR2EP22531 72 aa7.45□□□□□ -1.22
CLN3-225ENST00000566824 SPRR2BP35325 72 aa7.45□□□□□ -1.22
CLN3-225ENST00000566824 SPRR2AP35326 72 aa7.45□□□□□ -1.22
CLN3-225ENST00000566824 LCE1AQ5T7P2 110 aa7.43□□□□□ -1.22
CLN3-225ENST00000566824 KRTAP19-7Q3SYF9 63 aa7.36□□□□□ -1.23
CLN3-225ENST00000566824 A6NED7 52 aa7.33□□□□□ -1.24
CLN3-225ENST00000566824 TNP1P09430 55 aa7.3□□□□□ -1.24
CLN3-225ENST00000566824 KRTAP19-5Q3LI72 72 aa7.27□□□□□ -1.25
CLN3-225ENST00000566824 LCE3AQ5TA76 89 aa7.27□□□□□ -1.25
CLN3-225ENST00000566824 MT1EP04732 61 aa7.26□□□□□ -1.25
CLN3-225ENST00000566824 KRTAP20-1Q3LI63 56 aa7.25□□□□□ -1.25
CLN3-225ENST00000566824 K7ERS5 55 aa7.22□□□□□ -1.25
CLN3-225ENST00000566824 SPRR2DP22532 72 aa7.19□□□□□ -1.26
CLN3-225ENST00000566824 KRTAP2-3P0C7H8 128 aa7.14□□□□□ -1.27
CLN3-225ENST00000566824 KRTAP2-4Q9BYR9 128 aa7.14□□□□□ -1.27
CLN3-225ENST00000566824 KRTAP19-3Q7Z4W3 81 aa7.09□□□□□ -1.27
CLN3-225ENST00000566824 LCE5AQ5TCM9 118 aa7.08□□□□□ -1.28
CLN3-225ENST00000566824 CDC42SE1Q9NRR8 79 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms