RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 A8MUN3 132 aa5.21□□□□□ -1.58
SMG1-208ENST00000563448 Q5VV11 94 aa5.21□□□□□ -1.58
SMG1-208ENST00000563448 CHKB-CPT1BH3BT56 60 aa5.19□□□□□ -1.58
SMG1-208ENST00000563448 KTN1-AS1Q86SY8 53 aa5.18□□□□□ -1.58
SMG1-208ENST00000563448 PRR15LQ9BU68 103 aa5.15□□□□□ -1.58
SMG1-208ENST00000563448 KRTAP3-1Q9BYR8 98 aa5.15□□□□□ -1.58
SMG1-208ENST00000563448 COX6B2Q6YFQ2 88 aa5.14□□□□□ -1.59
SMG1-208ENST00000563448 RNF213Q63HN8 5207 aa5.14□□□□□ -1.59
SMG1-208ENST00000563448 CDC42SE1Q9NRR8 79 aa5.14□□□□□ -1.59
SMG1-208ENST00000563448 COA5Q86WW8 74 aa5.13□□□□□ -1.59
SMG1-208ENST00000563448 RBM12B-AS1Q9P1G2 102 aa5.13□□□□□ -1.59
SMG1-208ENST00000563448 LINC01558Q9Y6Z2 57 aa5.13□□□□□ -1.59
SMG1-208ENST00000563448 A6NED7 52 aa5.12□□□□□ -1.59
SMG1-208ENST00000563448 DMAC1Q96GE9 116 aa5.12□□□□□ -1.59
SMG1-208ENST00000563448 KRTAP19-2Q3LHN2 52 aa5.11□□□□□ -1.59
SMG1-208ENST00000563448 MUC2Q02817 5179 aa5.11□□□□□ -1.59
SMG1-208ENST00000563448 A8MU10 97 aa5.09□□□□□ -1.6
SMG1-208ENST00000563448 A6NN06 94 aa5.07□□□□□ -1.6
SMG1-208ENST00000563448 LCA10Q71F78 164 aa5.07□□□□□ -1.6
SMG1-208ENST00000563448 SPTSSBQ8NFR3 76 aa5.07□□□□□ -1.6
SMG1-208ENST00000563448 ACYP2P14621 99 aa5.06□□□□□ -1.6
SMG1-208ENST00000563448 H1FX-AS1Q4G0G2 97 aa5.06□□□□□ -1.6
SMG1-208ENST00000563448 LCE2CQ5TA81 110 aa5.03□□□□□ -1.6
SMG1-208ENST00000563448 S4R3F8 94 aa4.99□□□□□ -1.61
SMG1-208ENST00000563448 FLGP20930 4061 aaPredicted RBP4.98□□□□□ -1.61
SMG1-208ENST00000563448 FAT4Q6V0I7 4981 aa4.96□□□□□ -1.62
SMG1-208ENST00000563448 MT1HP80294 61 aa4.93□□□□□ -1.62
SMG1-208ENST00000563448 CSAG1Q6PB30 78 aa4.88□□□□□ -1.63
SMG1-208ENST00000563448 SPATA8Q6RVD6 105 aa4.87□□□□□ -1.63
SMG1-208ENST00000563448 A0A1B0GU69 56 aa4.87□□□□□ -1.63
SMG1-208ENST00000563448 M0R2T5 61 aa4.85□□□□□ -1.63
SMG1-208ENST00000563448 UQCR11O14957 56 aa4.85□□□□□ -1.63
SMG1-208ENST00000563448 LCE2AQ5TA79 106 aaPredicted RBP4.83□□□□□ -1.64
SMG1-208ENST00000563448 LINC01554Q52M75 96 aa4.82□□□□□ -1.64
SMG1-208ENST00000563448 MIR22HGQ0VDD5 57 aa4.81□□□□□ -1.64
SMG1-208ENST00000563448 PRAC1Q96KF2 57 aa4.79□□□□□ -1.64
SMG1-208ENST00000563448 H0YAA0 97 aa4.77□□□□□ -1.65
SMG1-208ENST00000563448 KRTAP9-2Q9BYQ4 174 aa4.77□□□□□ -1.65
SMG1-208ENST00000563448 KRTAP10-6P60371 365 aaPredicted RBP4.77□□□□□ -1.65
SMG1-208ENST00000563448 ADM2Q7Z4H4 148 aa4.76□□□□□ -1.65
SMG1-208ENST00000563448 H3BS24 57 aa4.75□□□□□ -1.65
SMG1-208ENST00000563448 LORP23490 312 aaPredicted RBP4.74□□□□□ -1.65
SMG1-208ENST00000563448 KRTAP9-8Q9BYQ0 159 aa4.73□□□□□ -1.65
SMG1-208ENST00000563448 P0C880 135 aa4.73□□□□□ -1.65
SMG1-208ENST00000563448 MT2AP02795 61 aa4.71□□□□□ -1.66
SMG1-208ENST00000563448 MT1FP04733 61 aa4.68□□□□□ -1.66
SMG1-208ENST00000563448 KRTAP9-6A0A140TA67 174 aa4.65□□□□□ -1.67
SMG1-208ENST00000563448 KRTAP10-10P60014 251 aa4.65□□□□□ -1.67
SMG1-208ENST00000563448 A0A1B0GU33 70 aa4.63□□□□□ -1.67
SMG1-208ENST00000563448 KRTAP13-4Q3LI77 160 aa4.6□□□□□ -1.67
SMG1-208ENST00000563448 CRIPTQ9P021 101 aa4.6□□□□□ -1.67
SMG1-208ENST00000563448 R4GN34 69 aa4.58□□□□□ -1.68
SMG1-208ENST00000563448 M0QZ58 72 aa4.58□□□□□ -1.68
SMG1-208ENST00000563448 KRTAP9-3Q9BYQ3 159 aa4.57□□□□□ -1.68
SMG1-208ENST00000563448 K7ERS5 55 aa4.56□□□□□ -1.68
SMG1-208ENST00000563448 KRTAP25-1Q3LHN0 102 aa4.56□□□□□ -1.68
SMG1-208ENST00000563448 KRTAP19-1Q8IUB9 90 aa4.56□□□□□ -1.68
SMG1-208ENST00000563448 SPRR2GQ9BYE4 73 aa4.55□□□□□ -1.68
SMG1-208ENST00000563448 ROMO1P60602 79 aa4.51□□□□□ -1.69
SMG1-208ENST00000563448 A0A0D9SG42 100 aa4.49□□□□□ -1.69
SMG1-208ENST00000563448 LCE2BO14633 110 aa4.48□□□□□ -1.69
SMG1-208ENST00000563448 CRCT1Q9UGL9 99 aa4.48□□□□□ -1.69
SMG1-208ENST00000563448 FSIP2Q5CZC0 6907 aa4.45□□□□□ -1.7
SMG1-208ENST00000563448 KRTAP19-8Q3LI54 63 aa4.45□□□□□ -1.7
SMG1-208ENST00000563448 MT1BP07438 61 aa4.41□□□□□ -1.7
SMG1-208ENST00000563448 KRTAP12-1P59990 96 aa4.41□□□□□ -1.7
SMG1-208ENST00000563448 KRTAP12-2P59991 146 aa4.4□□□□□ -1.7
SMG1-208ENST00000563448 SPINT4Q6UDR6 99 aa4.39□□□□□ -1.71
SMG1-208ENST00000563448 PLAC4Q8WY50 150 aa4.36□□□□□ -1.71
SMG1-208ENST00000563448 USH2AO75445 5202 aa4.35□□□□□ -1.71
SMG1-208ENST00000563448 CAMK2N1Q7Z7J9 78 aa4.27□□□□□ -1.73
SMG1-208ENST00000563448 SSPOA2VEC9 5147 aa4.24□□□□□ -1.73
SMG1-208ENST00000563448 MT1XP80297 61 aa4.24□□□□□ -1.73
SMG1-208ENST00000563448 KRTAP10-5P60370 271 aa4.23□□□□□ -1.73
SMG1-208ENST00000563448 KRTAP19-6Q3LI70 58 aa4.21□□□□□ -1.74
SMG1-208ENST00000563448 KRTAP15-1Q3LI76 137 aa4.2□□□□□ -1.74
SMG1-208ENST00000563448 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.19□□□□□ -1.74
SMG1-208ENST00000563448 C10orf95Q9H7T3 257 aa4.19□□□□□ -1.74
SMG1-208ENST00000563448 KRTAP9-7A8MTY7 169 aa4.17□□□□□ -1.74
SMG1-208ENST00000563448 PRO2289Q9P1D8 64 aa4.17□□□□□ -1.74
SMG1-208ENST00000563448 NDUFAF8A1L188 74 aa4.16□□□□□ -1.74
SMG1-208ENST00000563448 FCGBPQ9Y6R7 5405 aaPredicted RBP4.1□□□□□ -1.75
SMG1-208ENST00000563448 KRTAP10-7P60409 375 aaPredicted RBP4.07□□□□□ -1.76
SMG1-208ENST00000563448 TNP1P09430 55 aa4.05□□□□□ -1.76
SMG1-208ENST00000563448 A0A0A0MQY5 61 aa4.04□□□□□ -1.76
SMG1-208ENST00000563448 KRTAP10-12P60413 245 aa4.02□□□□□ -1.77
SMG1-208ENST00000563448 MACF1Q9UPN3 7388 aaKnown RBP4.01□□□□□ -1.77
SMG1-208ENST00000563448 PP632Q6XCG6 107 aa3.95□□□□□ -1.78
SMG1-208ENST00000563448 KRTAP4-8A0A0G2JLE6 195 aa3.94□□□□□ -1.78
SMG1-208ENST00000563448 KRTAP4-8Q9BYQ9 185 aa3.94□□□□□ -1.78
SMG1-208ENST00000563448 SYNE2Q8WXH0 6885 aaKnown RBP3.93□□□□□ -1.78
SMG1-208ENST00000563448 LCE3AQ5TA76 89 aa3.93□□□□□ -1.78
SMG1-208ENST00000563448 LUZP6Q538Z0 58 aa3.92□□□□□ -1.78
SMG1-208ENST00000563448 KMT2DO14686 5537 aa3.91□□□□□ -1.78
SMG1-208ENST00000563448 KRTAP23-1A1A580 65 aa3.9□□□□□ -1.79
SMG1-208ENST00000563448 KRTAP6-3Q3LI67 103 aa3.85□□□□□ -1.79
SMG1-208ENST00000563448 LOC100996750A0A140TA64 210 aa3.85□□□□□ -1.79
SMG1-208ENST00000563448 KRTAP4-6Q9BYQ5 205 aa3.85□□□□□ -1.79
SMG1-208ENST00000563448 KRTAP8-1Q8IUC2 63 aa3.83□□□□□ -1.8
SMG1-208ENST00000563448 KRTAP19-5Q3LI72 72 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms