RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 C20orf197Q8N268 126 aa7.94□□□□□ -1.14
CLK3-210ENST00000563112 ATP5EP56381 51 aaPredicted RBP7.93□□□□□ -1.14
CLK3-210ENST00000563112 C5orf47Q569G3 176 aa7.89□□□□□ -1.15
CLK3-210ENST00000563112 TP53AIP1Q9HCN2 124 aa7.89□□□□□ -1.15
CLK3-210ENST00000563112 RPS28P62857 69 aaKnown RBP7.88□□□□□ -1.15
CLK3-210ENST00000563112 OCR1Q9BZK8 76 aa7.88□□□□□ -1.15
CLK3-210ENST00000563112 KRTAP19-6Q3LI70 58 aa7.86□□□□□ -1.15
CLK3-210ENST00000563112 MP68P56378 58 aa7.85□□□□□ -1.15
CLK3-210ENST00000563112 H3BPC8 53 aa7.84□□□□□ -1.15
CLK3-210ENST00000563112 C1orf64Q8NEQ6 169 aa7.83□□□□□ -1.16
CLK3-210ENST00000563112 S4R3F8 94 aa7.81□□□□□ -1.16
CLK3-210ENST00000563112 KRTAP3-1Q9BYR8 98 aa7.8□□□□□ -1.16
CLK3-210ENST00000563112 H7BZZ5 65 aa7.78□□□□□ -1.16
CLK3-210ENST00000563112 CSAG1Q6PB30 78 aa7.78□□□□□ -1.16
CLK3-210ENST00000563112 MACF1Q9UPN3 7388 aaKnown RBP7.78□□□□□ -1.16
CLK3-210ENST00000563112 SNURFQ9Y675 71 aa7.77□□□□□ -1.17
CLK3-210ENST00000563112 SYNE2Q8WXH0 6885 aaKnown RBP7.75□□□□□ -1.17
CLK3-210ENST00000563112 SERP1Q9Y6X1 66 aa7.75□□□□□ -1.17
CLK3-210ENST00000563112 LCA10Q71F78 164 aa7.73□□□□□ -1.17
CLK3-210ENST00000563112 CYP4F30PQ9H0H9 118 aa7.71□□□□□ -1.18
CLK3-210ENST00000563112 CYSTM1Q9H1C7 97 aa7.7□□□□□ -1.18
CLK3-210ENST00000563112 TRAV22A0A0B4J277 110 aa7.69□□□□□ -1.18
CLK3-210ENST00000563112 LOC101927531A0A1B0GV80 90 aa7.68□□□□□ -1.18
CLK3-210ENST00000563112 H0Y9P7 68 aa7.68□□□□□ -1.18
CLK3-210ENST00000563112 LINC00208Q96KT6 92 aa7.64□□□□□ -1.19
CLK3-210ENST00000563112 SPANXA2-OT1Q8N9U9 137 aa7.62□□□□□ -1.19
CLK3-210ENST00000563112 SMIM26A0A096LP01 95 aa7.61□□□□□ -1.19
CLK3-210ENST00000563112 Q5VV11 94 aa7.59□□□□□ -1.19
CLK3-210ENST00000563112 SPRR2GQ9BYE4 73 aa7.58□□□□□ -1.2
CLK3-210ENST00000563112 KRTAP3-3Q9BYR6 98 aa7.58□□□□□ -1.2
CLK3-210ENST00000563112 MT1BP07438 61 aa7.54□□□□□ -1.2
CLK3-210ENST00000563112 KRTAP19-8Q3LI54 63 aa7.54□□□□□ -1.2
CLK3-210ENST00000563112 A6NN06 94 aa7.53□□□□□ -1.2
CLK3-210ENST00000563112 KRTAP6-3Q3LI67 103 aa7.52□□□□□ -1.21
CLK3-210ENST00000563112 CRIPTQ9P021 101 aa7.51□□□□□ -1.21
CLK3-210ENST00000563112 V9GYY9 64 aa7.48□□□□□ -1.21
CLK3-210ENST00000563112 A8MUN3 132 aa7.46□□□□□ -1.22
CLK3-210ENST00000563112 H0YAA0 97 aa7.41□□□□□ -1.22
CLK3-210ENST00000563112 KRTAP10-5P60370 271 aa7.4□□□□□ -1.22
CLK3-210ENST00000563112 Q1T7F1 81 aa7.35□□□□□ -1.23
CLK3-210ENST00000563112 ACYP2P14621 99 aa7.33□□□□□ -1.24
CLK3-210ENST00000563112 ADM2Q7Z4H4 148 aa7.33□□□□□ -1.24
CLK3-210ENST00000563112 COA5Q86WW8 74 aa7.3□□□□□ -1.24
CLK3-210ENST00000563112 NEBP20929 6669 aa7.29□□□□□ -1.24
CLK3-210ENST00000563112 CHKB-CPT1BH3BT56 60 aa7.24□□□□□ -1.25
CLK3-210ENST00000563112 DMAC1Q96GE9 116 aa7.23□□□□□ -1.25
CLK3-210ENST00000563112 SVIPQ8NHG7 77 aa7.18□□□□□ -1.26
CLK3-210ENST00000563112 PLAC4Q8WY50 150 aa7.18□□□□□ -1.26
CLK3-210ENST00000563112 R4GN34 69 aa7.18□□□□□ -1.26
CLK3-210ENST00000563112 MUC12Q9UKN1 5478 aa7.17□□□□□ -1.26
CLK3-210ENST00000563112 PRO2289Q9P1D8 64 aa7.17□□□□□ -1.26
CLK3-210ENST00000563112 SPTSSBQ8NFR3 76 aa7.16□□□□□ -1.26
CLK3-210ENST00000563112 PRR15LQ9BU68 103 aa7.16□□□□□ -1.26
CLK3-210ENST00000563112 PRO0628Q9UI54 55 aa7.15□□□□□ -1.26
CLK3-210ENST00000563112 P0C880 135 aa7.13□□□□□ -1.27
CLK3-210ENST00000563112 KRTAP5-9P26371 169 aa7.13□□□□□ -1.27
CLK3-210ENST00000563112 LINC01558Q9Y6Z2 57 aa7.13□□□□□ -1.27
CLK3-210ENST00000563112 M0QZ58 72 aa7.11□□□□□ -1.27
CLK3-210ENST00000563112 PSPHP1O15172 72 aa7.1□□□□□ -1.27
CLK3-210ENST00000563112 BRK1Q8WUW1 75 aa7.1□□□□□ -1.27
CLK3-210ENST00000563112 KMT2DO14686 5537 aa7.07□□□□□ -1.28
CLK3-210ENST00000563112 MT1XP80297 61 aa7.06□□□□□ -1.28
CLK3-210ENST00000563112 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
CLK3-210ENST00000563112 LINC01554Q52M75 96 aa7.02□□□□□ -1.29
CLK3-210ENST00000563112 A6NED7 52 aa7.01□□□□□ -1.29
CLK3-210ENST00000563112 SEC61GP60059 68 aa7.01□□□□□ -1.29
CLK3-210ENST00000563112 MDN1Q9NU22 5596 aa7.01□□□□□ -1.29
CLK3-210ENST00000563112 A0A1B0GU69 56 aa6.99□□□□□ -1.29
CLK3-210ENST00000563112 KRTAP20-1Q3LI63 56 aa6.99□□□□□ -1.29
CLK3-210ENST00000563112 SPRR2FQ96RM1 72 aa6.94□□□□□ -1.3
CLK3-210ENST00000563112 KRTAP12-2P59991 146 aa6.93□□□□□ -1.3
CLK3-210ENST00000563112 CDC42SE1Q9NRR8 79 aa6.92□□□□□ -1.3
CLK3-210ENST00000563112 KRTAP8-1Q8IUC2 63 aa6.91□□□□□ -1.3
CLK3-210ENST00000563112 UQCR11O14957 56 aa6.87□□□□□ -1.31
CLK3-210ENST00000563112 SPRR2EP22531 72 aa6.85□□□□□ -1.31
CLK3-210ENST00000563112 SPRR2BP35325 72 aa6.85□□□□□ -1.31
CLK3-210ENST00000563112 SPRR2AP35326 72 aa6.85□□□□□ -1.31
CLK3-210ENST00000563112 KRTAP2-3P0C7H8 128 aa6.81□□□□□ -1.32
CLK3-210ENST00000563112 KRTAP2-4Q9BYR9 128 aa6.81□□□□□ -1.32
CLK3-210ENST00000563112 KRTAP4-8A0A0G2JLE6 195 aa6.77□□□□□ -1.33
CLK3-210ENST00000563112 KRTAP4-8Q9BYQ9 185 aa6.77□□□□□ -1.33
CLK3-210ENST00000563112 MIR22HGQ0VDD5 57 aa6.76□□□□□ -1.33
CLK3-210ENST00000563112 PMAIP1Q13794 54 aa6.76□□□□□ -1.33
CLK3-210ENST00000563112 SPATA8Q6RVD6 105 aa6.75□□□□□ -1.33
CLK3-210ENST00000563112 KRTAP10-7P60409 375 aaPredicted RBP6.73□□□□□ -1.33
CLK3-210ENST00000563112 KRTAP10-12P60413 245 aa6.72□□□□□ -1.33
CLK3-210ENST00000563112 LCE1AQ5T7P2 110 aa6.72□□□□□ -1.33
CLK3-210ENST00000563112 A0A1B0GU33 70 aa6.67□□□□□ -1.34
CLK3-210ENST00000563112 SPRR2DP22532 72 aa6.63□□□□□ -1.35
CLK3-210ENST00000563112 K7ERS5 55 aa6.62□□□□□ -1.35
CLK3-210ENST00000563112 KRTAP13-4Q3LI77 160 aa6.62□□□□□ -1.35
CLK3-210ENST00000563112 CAMK2N1Q7Z7J9 78 aa6.61□□□□□ -1.35
CLK3-210ENST00000563112 KTN1-AS1Q86SY8 53 aa6.58□□□□□ -1.36
CLK3-210ENST00000563112 KRTAP2-2Q9BYT5 123 aa6.58□□□□□ -1.36
CLK3-210ENST00000563112 KRTAP2-1Q9BYU5 128 aa6.58□□□□□ -1.36
CLK3-210ENST00000563112 A8MU10 97 aa6.55□□□□□ -1.36
CLK3-210ENST00000563112 A0A0D9SG42 100 aa6.48□□□□□ -1.37
CLK3-210ENST00000563112 LCE3BQ5TA77 95 aa6.44□□□□□ -1.38
CLK3-210ENST00000563112 SPINT4Q6UDR6 99 aa6.41□□□□□ -1.38
CLK3-210ENST00000563112 KRTAP12-1P59990 96 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms