RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 KRTAP9-8Q9BYQ0 159 aa8.98□□□□□ -0.97
RAB40C-207ENST00000563109 NDUFC1O43677 76 aa8.96□□□□□ -0.98
RAB40C-207ENST00000563109 SPANXA2-OT1Q8N9U9 137 aa8.96□□□□□ -0.98
RAB40C-207ENST00000563109 MT2AP02795 61 aa8.93□□□□□ -0.98
RAB40C-207ENST00000563109 ACYP2P14621 99 aa8.93□□□□□ -0.98
RAB40C-207ENST00000563109 KRTAP3-3Q9BYR6 98 aa8.92□□□□□ -0.98
RAB40C-207ENST00000563109 KRTAP10-10P60014 251 aa8.88□□□□□ -0.99
RAB40C-207ENST00000563109 MT1FP04733 61 aa8.87□□□□□ -0.99
RAB40C-207ENST00000563109 CYSTM1Q9H1C7 97 aa8.87□□□□□ -0.99
RAB40C-207ENST00000563109 H7BZZ5 65 aa8.83□□□□□ -1
RAB40C-207ENST00000563109 LCE2DQ5TA82 110 aaPredicted RBP8.83□□□□□ -1
RAB40C-207ENST00000563109 CHKB-CPT1BH3BT56 60 aa8.82□□□□□ -1
RAB40C-207ENST00000563109 KRTAP9-2Q9BYQ4 174 aa8.8□□□□□ -1
RAB40C-207ENST00000563109 SPTSSBQ8NFR3 76 aa8.78□□□□□ -1
RAB40C-207ENST00000563109 H0YAA0 97 aa8.72□□□□□ -1.01
RAB40C-207ENST00000563109 TMEM258P61165 79 aa8.69□□□□□ -1.02
RAB40C-207ENST00000563109 COA5Q86WW8 74 aa8.68□□□□□ -1.02
RAB40C-207ENST00000563109 KRTAP9-3Q9BYQ3 159 aa8.68□□□□□ -1.02
RAB40C-207ENST00000563109 ADM2Q7Z4H4 148 aa8.65□□□□□ -1.02
RAB40C-207ENST00000563109 ATP5EP56381 51 aaPredicted RBP8.64□□□□□ -1.03
RAB40C-207ENST00000563109 CRIPTQ9P021 101 aa8.57□□□□□ -1.04
RAB40C-207ENST00000563109 LCE2BO14633 110 aa8.53□□□□□ -1.04
RAB40C-207ENST00000563109 RPS28P62857 69 aaKnown RBP8.49□□□□□ -1.05
RAB40C-207ENST00000563109 P0C880 135 aa8.48□□□□□ -1.05
RAB40C-207ENST00000563109 KRTAP19-1Q8IUB9 90 aa8.48□□□□□ -1.05
RAB40C-207ENST00000563109 SPRR2GQ9BYE4 73 aa8.47□□□□□ -1.05
RAB40C-207ENST00000563109 KRTAP3-2Q9BYR7 98 aa8.46□□□□□ -1.06
RAB40C-207ENST00000563109 SERP1Q9Y6X1 66 aa8.45□□□□□ -1.06
RAB40C-207ENST00000563109 USH2AO75445 5202 aa8.45□□□□□ -1.06
RAB40C-207ENST00000563109 R4GN34 69 aa8.42□□□□□ -1.06
RAB40C-207ENST00000563109 FSIP2Q5CZC0 6907 aa8.4□□□□□ -1.06
RAB40C-207ENST00000563109 SEC61GP60059 68 aa8.4□□□□□ -1.06
RAB40C-207ENST00000563109 CRCT1Q9UGL9 99 aa8.4□□□□□ -1.06
RAB40C-207ENST00000563109 M0QZ58 72 aa8.36□□□□□ -1.07
RAB40C-207ENST00000563109 Q5VV11 94 aa8.36□□□□□ -1.07
RAB40C-207ENST00000563109 KRTAP9-6A0A140TA67 174 aa8.35□□□□□ -1.07
RAB40C-207ENST00000563109 KRTAP19-8Q3LI54 63 aa8.34□□□□□ -1.07
RAB40C-207ENST00000563109 A0A1B0GU69 56 aa8.25□□□□□ -1.09
RAB40C-207ENST00000563109 MT1BP07438 61 aa8.25□□□□□ -1.09
RAB40C-207ENST00000563109 SMIM26A0A096LP01 95 aa8.24□□□□□ -1.09
RAB40C-207ENST00000563109 SSPOA2VEC9 5147 aa8.23□□□□□ -1.09
RAB40C-207ENST00000563109 LINC01554Q52M75 96 aa8.22□□□□□ -1.09
RAB40C-207ENST00000563109 KRTAP19-6Q3LI70 58 aa8.18□□□□□ -1.1
RAB40C-207ENST00000563109 PRR15LQ9BU68 103 aa8.18□□□□□ -1.1
RAB40C-207ENST00000563109 A0A1B0GU33 70 aa8.16□□□□□ -1.1
RAB40C-207ENST00000563109 LINC01558Q9Y6Z2 57 aa8.15□□□□□ -1.1
RAB40C-207ENST00000563109 PLAC4Q8WY50 150 aa8.14□□□□□ -1.11
RAB40C-207ENST00000563109 KRTAP13-4Q3LI77 160 aa8.11□□□□□ -1.11
RAB40C-207ENST00000563109 Q1T7F1 81 aa8.08□□□□□ -1.12
RAB40C-207ENST00000563109 A6NN06 94 aa8.04□□□□□ -1.12
RAB40C-207ENST00000563109 V9GYY9 64 aa8.04□□□□□ -1.12
RAB40C-207ENST00000563109 SPATA8Q6RVD6 105 aa8.03□□□□□ -1.12
RAB40C-207ENST00000563109 FCGBPQ9Y6R7 5405 aaPredicted RBP8□□□□□ -1.13
RAB40C-207ENST00000563109 KRTAP10-5P60370 271 aa7.99□□□□□ -1.13
RAB40C-207ENST00000563109 A0A0D9SG42 100 aa7.98□□□□□ -1.13
RAB40C-207ENST00000563109 PRO2289Q9P1D8 64 aa7.96□□□□□ -1.14
RAB40C-207ENST00000563109 UQCR11O14957 56 aa7.89□□□□□ -1.15
RAB40C-207ENST00000563109 PSPHP1O15172 72 aa7.88□□□□□ -1.15
RAB40C-207ENST00000563109 MT1XP80297 61 aa7.86□□□□□ -1.15
RAB40C-207ENST00000563109 SPINT4Q6UDR6 99 aa7.84□□□□□ -1.15
RAB40C-207ENST00000563109 A8MU10 97 aa7.83□□□□□ -1.16
RAB40C-207ENST00000563109 CAMK2N1Q7Z7J9 78 aa7.83□□□□□ -1.16
RAB40C-207ENST00000563109 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.8□□□□□ -1.16
RAB40C-207ENST00000563109 KRTAP12-1P59990 96 aa7.79□□□□□ -1.16
RAB40C-207ENST00000563109 MIR22HGQ0VDD5 57 aa7.75□□□□□ -1.17
RAB40C-207ENST00000563109 KRTAP12-2P59991 146 aa7.74□□□□□ -1.17
RAB40C-207ENST00000563109 MACF1Q9UPN3 7388 aaKnown RBP7.67□□□□□ -1.18
RAB40C-207ENST00000563109 A6NED7 52 aa7.67□□□□□ -1.18
RAB40C-207ENST00000563109 K7ERS5 55 aa7.57□□□□□ -1.2
RAB40C-207ENST00000563109 BRK1Q8WUW1 75 aa7.57□□□□□ -1.2
RAB40C-207ENST00000563109 KRTAP9-7A8MTY7 169 aa7.56□□□□□ -1.2
RAB40C-207ENST00000563109 SYNE2Q8WXH0 6885 aaKnown RBP7.54□□□□□ -1.2
RAB40C-207ENST00000563109 CDC42SE1Q9NRR8 79 aa7.53□□□□□ -1.2
RAB40C-207ENST00000563109 KRTAP10-7P60409 375 aaPredicted RBP7.51□□□□□ -1.21
RAB40C-207ENST00000563109 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
RAB40C-207ENST00000563109 KRTAP6-3Q3LI67 103 aa7.46□□□□□ -1.22
RAB40C-207ENST00000563109 PRO0628Q9UI54 55 aa7.46□□□□□ -1.22
RAB40C-207ENST00000563109 KRTAP8-1Q8IUC2 63 aa7.39□□□□□ -1.23
RAB40C-207ENST00000563109 C10orf95Q9H7T3 257 aa7.39□□□□□ -1.23
RAB40C-207ENST00000563109 KMT2DO14686 5537 aa7.37□□□□□ -1.23
RAB40C-207ENST00000563109 KRTAP4-8A0A0G2JLE6 195 aa7.34□□□□□ -1.23
RAB40C-207ENST00000563109 TNP1P09430 55 aa7.34□□□□□ -1.23
RAB40C-207ENST00000563109 KRTAP4-8Q9BYQ9 185 aa7.34□□□□□ -1.23
RAB40C-207ENST00000563109 KRTAP5-9P26371 169 aa7.3□□□□□ -1.24
RAB40C-207ENST00000563109 SPRR2FQ96RM1 72 aa7.25□□□□□ -1.25
RAB40C-207ENST00000563109 PMAIP1Q13794 54 aa7.18□□□□□ -1.26
RAB40C-207ENST00000563109 KRTAP25-1Q3LHN0 102 aa7.17□□□□□ -1.26
RAB40C-207ENST00000563109 MUC12Q9UKN1 5478 aa7.11□□□□□ -1.27
RAB40C-207ENST00000563109 ROMO1P60602 79 aa7.1□□□□□ -1.27
RAB40C-207ENST00000563109 LCE3AQ5TA76 89 aa7.09□□□□□ -1.27
RAB40C-207ENST00000563109 NEBP20929 6669 aa7.05□□□□□ -1.28
RAB40C-207ENST00000563109 SPRR2EP22531 72 aa7.03□□□□□ -1.28
RAB40C-207ENST00000563109 SPRR2BP35325 72 aa7.03□□□□□ -1.28
RAB40C-207ENST00000563109 SPRR2AP35326 72 aa7.03□□□□□ -1.28
RAB40C-207ENST00000563109 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
RAB40C-207ENST00000563109 MDN1Q9NU22 5596 aa7.01□□□□□ -1.29
RAB40C-207ENST00000563109 KRTAP19-5Q3LI72 72 aa6.99□□□□□ -1.29
RAB40C-207ENST00000563109 SVIPQ8NHG7 77 aa6.96□□□□□ -1.3
RAB40C-207ENST00000563109 MT1EP04732 61 aa6.95□□□□□ -1.3
RAB40C-207ENST00000563109 LCE1AQ5T7P2 110 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms