RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 CHKB-CPT1BH3BT56 60 aa6.88□□□□□ -1.31
CLK3-209ENST00000562670 S4R3F8 94 aa6.88□□□□□ -1.31
CLK3-209ENST00000562670 LCE2CQ5TA81 110 aa6.86□□□□□ -1.31
CLK3-209ENST00000562670 LCA10Q71F78 164 aa6.84□□□□□ -1.31
CLK3-209ENST00000562670 SPTSSBQ8NFR3 76 aa6.84□□□□□ -1.31
CLK3-209ENST00000562670 KRTAP3-3Q9BYR6 98 aa6.82□□□□□ -1.32
CLK3-209ENST00000562670 SMIM26A0A096LP01 95 aa6.75□□□□□ -1.33
CLK3-209ENST00000562670 CSAG1Q6PB30 78 aa6.75□□□□□ -1.33
CLK3-209ENST00000562670 FAT4Q6V0I7 4981 aa6.75□□□□□ -1.33
CLK3-209ENST00000562670 MT1HP80294 61 aa6.73□□□□□ -1.33
CLK3-209ENST00000562670 V9GYY9 64 aa6.69□□□□□ -1.34
CLK3-209ENST00000562670 H0YAA0 97 aa6.67□□□□□ -1.34
CLK3-209ENST00000562670 Q1T7F1 81 aa6.67□□□□□ -1.34
CLK3-209ENST00000562670 LINC01558Q9Y6Z2 57 aa6.67□□□□□ -1.34
CLK3-209ENST00000562670 M0R2T5 61 aa6.6□□□□□ -1.35
CLK3-209ENST00000562670 LCE2AQ5TA79 106 aaPredicted RBP6.59□□□□□ -1.35
CLK3-209ENST00000562670 SEC61GP60059 68 aa6.58□□□□□ -1.36
CLK3-209ENST00000562670 A0A1B0GU69 56 aa6.57□□□□□ -1.36
CLK3-209ENST00000562670 PRR15LQ9BU68 103 aa6.57□□□□□ -1.36
CLK3-209ENST00000562670 KRTAP3-2Q9BYR7 98 aa6.54□□□□□ -1.36
CLK3-209ENST00000562670 KRTAP10-6P60371 365 aaPredicted RBP6.52□□□□□ -1.37
CLK3-209ENST00000562670 ADM2Q7Z4H4 148 aa6.52□□□□□ -1.37
CLK3-209ENST00000562670 LORP23490 312 aaPredicted RBP6.49□□□□□ -1.37
CLK3-209ENST00000562670 P0C880 135 aa6.47□□□□□ -1.37
CLK3-209ENST00000562670 Q5VV11 94 aa6.47□□□□□ -1.37
CLK3-209ENST00000562670 PSPHP1O15172 72 aa6.46□□□□□ -1.38
CLK3-209ENST00000562670 KRTAP9-8Q9BYQ0 159 aa6.46□□□□□ -1.38
CLK3-209ENST00000562670 MT2AP02795 61 aa6.43□□□□□ -1.38
CLK3-209ENST00000562670 CRIPTQ9P021 101 aa6.42□□□□□ -1.38
CLK3-209ENST00000562670 A0A1B0GU33 70 aa6.41□□□□□ -1.38
CLK3-209ENST00000562670 MT1FP04733 61 aa6.38□□□□□ -1.39
CLK3-209ENST00000562670 M0QZ58 72 aa6.37□□□□□ -1.39
CLK3-209ENST00000562670 UQCR11O14957 56 aa6.37□□□□□ -1.39
CLK3-209ENST00000562670 KRTAP10-10P60014 251 aa6.34□□□□□ -1.39
CLK3-209ENST00000562670 R4GN34 69 aa6.33□□□□□ -1.4
CLK3-209ENST00000562670 A6NED7 52 aa6.3□□□□□ -1.4
CLK3-209ENST00000562670 KRTAP13-4Q3LI77 160 aa6.3□□□□□ -1.4
CLK3-209ENST00000562670 SPRR2GQ9BYE4 73 aa6.29□□□□□ -1.4
CLK3-209ENST00000562670 MIR22HGQ0VDD5 57 aa6.27□□□□□ -1.41
CLK3-209ENST00000562670 SPATA8Q6RVD6 105 aa6.26□□□□□ -1.41
CLK3-209ENST00000562670 KRTAP19-1Q8IUB9 90 aa6.24□□□□□ -1.41
CLK3-209ENST00000562670 KRTAP9-3Q9BYQ3 159 aa6.24□□□□□ -1.41
CLK3-209ENST00000562670 CDC42SE1Q9NRR8 79 aa6.23□□□□□ -1.41
CLK3-209ENST00000562670 A6NN06 94 aa6.19□□□□□ -1.42
CLK3-209ENST00000562670 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.42
CLK3-209ENST00000562670 A8MU10 97 aa6.14□□□□□ -1.43
CLK3-209ENST00000562670 A0A0D9SG42 100 aa6.12□□□□□ -1.43
CLK3-209ENST00000562670 LINC01554Q52M75 96 aa6.12□□□□□ -1.43
CLK3-209ENST00000562670 BRK1Q8WUW1 75 aa6.12□□□□□ -1.43
CLK3-209ENST00000562670 KRTAP12-1P59990 96 aa6.08□□□□□ -1.44
CLK3-209ENST00000562670 LCE2BO14633 110 aa6.06□□□□□ -1.44
CLK3-209ENST00000562670 LCE2DQ5TA82 110 aaPredicted RBP6.06□□□□□ -1.44
CLK3-209ENST00000562670 K7ERS5 55 aa6.04□□□□□ -1.44
CLK3-209ENST00000562670 MT1BP07438 61 aa6.03□□□□□ -1.44
CLK3-209ENST00000562670 KRTAP12-2P59991 146 aa6.03□□□□□ -1.44
CLK3-209ENST00000562670 SPINT4Q6UDR6 99 aa6□□□□□ -1.45
CLK3-209ENST00000562670 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
CLK3-209ENST00000562670 PRO0628Q9UI54 55 aa5.98□□□□□ -1.45
CLK3-209ENST00000562670 USH2AO75445 5202 aa5.93□□□□□ -1.46
CLK3-209ENST00000562670 CAMK2N1Q7Z7J9 78 aa5.89□□□□□ -1.47
CLK3-209ENST00000562670 KRTAP9-2Q9BYQ4 174 aa5.82□□□□□ -1.48
CLK3-209ENST00000562670 MT1XP80297 61 aa5.81□□□□□ -1.48
CLK3-209ENST00000562670 PRO2289Q9P1D8 64 aa5.8□□□□□ -1.48
CLK3-209ENST00000562670 KRTAP10-5P60370 271 aa5.79□□□□□ -1.48
CLK3-209ENST00000562670 PMAIP1Q13794 54 aa5.79□□□□□ -1.48
CLK3-209ENST00000562670 KRTAP19-6Q3LI70 58 aa5.78□□□□□ -1.48
CLK3-209ENST00000562670 SSPOA2VEC9 5147 aa5.76□□□□□ -1.49
CLK3-209ENST00000562670 ROMO1P60602 79 aa5.75□□□□□ -1.49
CLK3-209ENST00000562670 C10orf95Q9H7T3 257 aa5.74□□□□□ -1.49
CLK3-209ENST00000562670 FSIP2Q5CZC0 6907 aa5.65□□□□□ -1.51
CLK3-209ENST00000562670 KRTAP25-1Q3LHN0 102 aa5.64□□□□□ -1.51
CLK3-209ENST00000562670 TNP1P09430 55 aa5.62□□□□□ -1.51
CLK3-209ENST00000562670 CRCT1Q9UGL9 99 aa5.6□□□□□ -1.51
CLK3-209ENST00000562670 KTN1-AS1Q86SY8 53 aa5.56□□□□□ -1.52
CLK3-209ENST00000562670 FCGBPQ9Y6R7 5405 aaPredicted RBP5.55□□□□□ -1.52
CLK3-209ENST00000562670 KRTAP10-12P60413 245 aa5.54□□□□□ -1.52
CLK3-209ENST00000562670 KRTAP10-7P60409 375 aaPredicted RBP5.52□□□□□ -1.53
CLK3-209ENST00000562670 KRTAP23-1A1A580 65 aa5.5□□□□□ -1.53
CLK3-209ENST00000562670 PP632Q6XCG6 107 aa5.44□□□□□ -1.54
CLK3-209ENST00000562670 KRTAP9-6A0A140TA67 174 aa5.42□□□□□ -1.54
CLK3-209ENST00000562670 PRAC1Q96KF2 57 aa5.39□□□□□ -1.55
CLK3-209ENST00000562670 LCE3AQ5TA76 89 aa5.37□□□□□ -1.55
CLK3-209ENST00000562670 KRTAP8-1Q8IUC2 63 aa5.33□□□□□ -1.56
CLK3-209ENST00000562670 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
CLK3-209ENST00000562670 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
CLK3-209ENST00000562670 KMT2DO14686 5537 aa5.29□□□□□ -1.56
CLK3-209ENST00000562670 MACF1Q9UPN3 7388 aaKnown RBP5.26□□□□□ -1.57
CLK3-209ENST00000562670 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.2□□□□□ -1.58
CLK3-209ENST00000562670 KRTAP12-3P60328 96 aa5.19□□□□□ -1.58
CLK3-209ENST00000562670 KRTAP19-7Q3SYF9 63 aa5.19□□□□□ -1.58
CLK3-209ENST00000562670 KRTAP19-5Q3LI72 72 aa5.18□□□□□ -1.58
CLK3-209ENST00000562670 SVIPQ8NHG7 77 aa5.17□□□□□ -1.58
CLK3-209ENST00000562670 KRTAP5-9P26371 169 aa5.14□□□□□ -1.59
CLK3-209ENST00000562670 MT1EP04732 61 aa5.11□□□□□ -1.59
CLK3-209ENST00000562670 KRTAP6-3Q3LI67 103 aa5.08□□□□□ -1.6
CLK3-209ENST00000562670 SYNE2Q8WXH0 6885 aaKnown RBP5.06□□□□□ -1.6
CLK3-209ENST00000562670 KRTAP15-1Q3LI76 137 aa5.06□□□□□ -1.6
CLK3-209ENST00000562670 SPRR2FQ96RM1 72 aa5.06□□□□□ -1.6
CLK3-209ENST00000562670 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
CLK3-209ENST00000562670 MT1LQ93083 61 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms