RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TPRXLQ17RH7 258 aa2.89□□□□□ -1.95
VPS13C-209ENST00000560637 S4R3F8 94 aa2.89□□□□□ -1.95
VPS13C-209ENST00000560637 A8MUU9 505 aa2.88□□□□□ -1.95
VPS13C-209ENST00000560637 A8MUN3 132 aa2.88□□□□□ -1.95
VPS13C-209ENST00000560637 C20orf166-AS1Q96NR2 134 aa2.88□□□□□ -1.95
VPS13C-209ENST00000560637 HECTD4Q9Y4D8 3996 aa2.87□□□□□ -1.95
VPS13C-209ENST00000560637 CSAG1Q6PB30 78 aa2.87□□□□□ -1.95
VPS13C-209ENST00000560637 KRTAP3-1Q9BYR8 98 aa2.87□□□□□ -1.95
VPS13C-209ENST00000560637 KRTAP16-1A8MUX0 517 aa2.86□□□□□ -1.95
VPS13C-209ENST00000560637 ABCA13Q86UQ4 5058 aa2.85□□□□□ -1.95
VPS13C-209ENST00000560637 PMAIP1Q13794 54 aa2.85□□□□□ -1.95
VPS13C-209ENST00000560637 SPINT4Q6UDR6 99 aa2.84□□□□□ -1.95
VPS13C-209ENST00000560637 LRP2P98164 4655 aa2.84□□□□□ -1.95
VPS13C-209ENST00000560637 K7ERS5 55 aa2.84□□□□□ -1.96
VPS13C-209ENST00000560637 PCLOQ9Y6V0 5065 aa2.83□□□□□ -1.96
VPS13C-209ENST00000560637 HSPG2P98160 4391 aa2.83□□□□□ -1.96
VPS13C-209ENST00000560637 SPANXA2-OT1Q8N9U9 137 aa2.82□□□□□ -1.96
VPS13C-209ENST00000560637 H1FX-AS1Q4G0G2 97 aa2.81□□□□□ -1.96
VPS13C-209ENST00000560637 R4GN34 69 aa2.81□□□□□ -1.96
VPS13C-209ENST00000560637 PKD1P98161 4303 aa2.8□□□□□ -1.96
VPS13C-209ENST00000560637 ADM2Q7Z4H4 148 aa2.8□□□□□ -1.96
VPS13C-209ENST00000560637 HERC1Q15751 4861 aa2.8□□□□□ -1.96
VPS13C-209ENST00000560637 DMAC1Q96GE9 116 aa2.8□□□□□ -1.96
VPS13C-209ENST00000560637 M0QZ58 72 aa2.78□□□□□ -1.96
VPS13C-209ENST00000560637 LCA10Q71F78 164 aa2.78□□□□□ -1.96
VPS13C-209ENST00000560637 SPATA8Q6RVD6 105 aa2.78□□□□□ -1.97
VPS13C-209ENST00000560637 UQCR11O14957 56 aa2.77□□□□□ -1.97
VPS13C-209ENST00000560637 A0A1B0GU33 70 aa2.77□□□□□ -1.97
VPS13C-209ENST00000560637 CAMK2N1Q7Z7J9 78 aa2.76□□□□□ -1.97
VPS13C-209ENST00000560637 MIR22HGQ0VDD5 57 aa2.75□□□□□ -1.97
VPS13C-209ENST00000560637 RNF213Q63HN8 5207 aa2.74□□□□□ -1.97
VPS13C-209ENST00000560637 KRTAP10-10P60014 251 aa2.74□□□□□ -1.97
VPS13C-209ENST00000560637 LPAP08519 4548 aa2.73□□□□□ -1.97
VPS13C-209ENST00000560637 RPS28P62857 69 aaKnown RBP2.73□□□□□ -1.97
VPS13C-209ENST00000560637 PKHD1L1Q86WI1 4243 aa2.72□□□□□ -1.97
VPS13C-209ENST00000560637 A8MU10 97 aa2.71□□□□□ -1.98
VPS13C-209ENST00000560637 UBR4Q5T4S7 5183 aa2.71□□□□□ -1.98
VPS13C-209ENST00000560637 KRTAP4-1Q9BYQ7 146 aa2.69□□□□□ -1.98
VPS13C-209ENST00000560637 CRIPTQ9P021 101 aa2.69□□□□□ -1.98
VPS13C-209ENST00000560637 P0C880 135 aa2.69□□□□□ -1.98
VPS13C-209ENST00000560637 LINC01558Q9Y6Z2 57 aa2.68□□□□□ -1.98
VPS13C-209ENST00000560637 MUC2Q02817 5179 aa2.68□□□□□ -1.98
VPS13C-209ENST00000560637 Q5VV11 94 aa2.67□□□□□ -1.98
VPS13C-209ENST00000560637 Q1T7F1 81 aa2.65□□□□□ -1.98
VPS13C-209ENST00000560637 KRTAP9-8Q9BYQ0 159 aa2.65□□□□□ -1.98
VPS13C-209ENST00000560637 FSIP2Q5CZC0 6907 aa2.65□□□□□ -1.99
VPS13C-209ENST00000560637 KRTAP4-8Q9BYQ9 185 aa2.65□□□□□ -1.99
VPS13C-209ENST00000560637 PLAC4Q8WY50 150 aa2.64□□□□□ -1.99
VPS13C-209ENST00000560637 KRTAP5-3Q6L8H2 238 aa2.64□□□□□ -1.99
VPS13C-209ENST00000560637 LUZP6Q538Z0 58 aa2.61□□□□□ -1.99
VPS13C-209ENST00000560637 FAT4Q6V0I7 4981 aa2.61□□□□□ -1.99
VPS13C-209ENST00000560637 KTN1-AS1Q86SY8 53 aa2.6□□□□□ -1.99
VPS13C-209ENST00000560637 CDC42SE1Q9NRR8 79 aa2.6□□□□□ -1.99
VPS13C-209ENST00000560637 KRTAP15-1Q3LI76 137 aa2.58□□□□□ -2
VPS13C-209ENST00000560637 HMCN2Q8NDA2 5059 aa2.58□□□□□ -2
VPS13C-209ENST00000560637 TNXBP22105 4242 aa2.56□□□□□ -2
VPS13C-209ENST00000560637 KRTAP4-7Q9BYR0 210 aa2.56□□□□□ -2
VPS13C-209ENST00000560637 KRTAP4-8A0A0G2JLE6 195 aa2.55□□□□□ -2
VPS13C-209ENST00000560637 H0YAA0 97 aa2.54□□□□□ -2
VPS13C-209ENST00000560637 MT1HP80294 61 aa2.52□□□□□ -2.01
VPS13C-209ENST00000560637 KRTAP13-4Q3LI77 160 aa2.51□□□□□ -2.01
VPS13C-209ENST00000560637 KRTAP10-6P60371 365 aaPredicted RBP2.5□□□□□ -2.01
VPS13C-209ENST00000560637 MUC17Q685J3 4493 aa2.48□□□□□ -2.01
VPS13C-209ENST00000560637 ROMO1P60602 79 aa2.47□□□□□ -2.01
VPS13C-209ENST00000560637 KRTAP12-2P59991 146 aa2.47□□□□□ -2.01
VPS13C-209ENST00000560637 KRTAP9-2Q9BYQ4 174 aa2.47□□□□□ -2.01
VPS13C-209ENST00000560637 C10orf95Q9H7T3 257 aa2.47□□□□□ -2.01
VPS13C-209ENST00000560637 KRTAP9-6A0A140TA67 174 aa2.46□□□□□ -2.02
VPS13C-209ENST00000560637 NDUFAF8A1L188 74 aa2.46□□□□□ -2.02
VPS13C-209ENST00000560637 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-209ENST00000560637 A6NN06 94 aa2.44□□□□□ -2.02
VPS13C-209ENST00000560637 MT2AP02795 61 aa2.44□□□□□ -2.02
VPS13C-209ENST00000560637 TNP1P09430 55 aa2.44□□□□□ -2.02
VPS13C-209ENST00000560637 MT1FP04733 61 aa2.43□□□□□ -2.02
VPS13C-209ENST00000560637 KRTAP12-1P59990 96 aa2.42□□□□□ -2.02
VPS13C-209ENST00000560637 PRO2289Q9P1D8 64 aa2.41□□□□□ -2.02
VPS13C-209ENST00000560637 KRTAP4-2Q9BYR5 136 aa2.4□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP19-4Q3LI73 84 aa2.39□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP19-2Q3LHN2 52 aa2.37□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP4-9Q9BYQ8 210 aa2.37□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP9-4Q9BYQ2 154 aa2.36□□□□□ -2.03
VPS13C-209ENST00000560637 CRCT1Q9UGL9 99 aa2.36□□□□□ -2.03
VPS13C-209ENST00000560637 USH2AO75445 5202 aa2.36□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP4-12Q9BQ66 201 aa2.36□□□□□ -2.03
VPS13C-209ENST00000560637 LCE5AQ5TCM9 118 aa2.35□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP9-9Q9BYP9 154 aa2.35□□□□□ -2.03
VPS13C-209ENST00000560637 KRTAP19-1Q8IUB9 90 aa2.34□□□□□ -2.04
VPS13C-209ENST00000560637 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
VPS13C-209ENST00000560637 KRTAP25-1Q3LHN0 102 aa2.32□□□□□ -2.04
VPS13C-209ENST00000560637 LCE4AQ5TA78 99 aa2.31□□□□□ -2.04
VPS13C-209ENST00000560637 FLGP20930 4061 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-209ENST00000560637 KRTAP9-7A8MTY7 169 aa2.3□□□□□ -2.04
VPS13C-209ENST00000560637 SPRR2GQ9BYE4 73 aa2.26□□□□□ -2.05
VPS13C-209ENST00000560637 LCE1DQ5T752 114 aa2.26□□□□□ -2.05
VPS13C-209ENST00000560637 KRTAP10-12P60413 245 aa2.25□□□□□ -2.05
VPS13C-209ENST00000560637 KRTAP9-3Q9BYQ3 159 aa2.24□□□□□ -2.05
VPS13C-209ENST00000560637 LCE3BQ5TA77 95 aa2.24□□□□□ -2.05
VPS13C-209ENST00000560637 MT1BP07438 61 aa2.21□□□□□ -2.06
VPS13C-209ENST00000560637 LCE3AQ5TA76 89 aa2.21□□□□□ -2.06
VPS13C-209ENST00000560637 KRTAP8-1Q8IUC2 63 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms