RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 SEC61GP60059 68 aa4.28□□□□□ -1.72
SMAD3-212ENST00000559937 RPL37P61927 97 aaKnown RBP4.28□□□□□ -1.72
SMAD3-212ENST00000559937 COX6B2Q6YFQ2 88 aa4.28□□□□□ -1.72
SMAD3-212ENST00000559937 KRTAP3-1Q9BYR8 98 aa4.27□□□□□ -1.73
SMAD3-212ENST00000559937 FAT3Q8TDW7 4589 aa4.26□□□□□ -1.73
SMAD3-212ENST00000559937 MIR22HGQ0VDD5 57 aa4.25□□□□□ -1.73
SMAD3-212ENST00000559937 MT1HL1P0DM35 61 aa4.24□□□□□ -1.73
SMAD3-212ENST00000559937 XP32Q5T750 250 aa4.24□□□□□ -1.73
SMAD3-212ENST00000559937 KTN1-AS1Q86SY8 53 aa4.24□□□□□ -1.73
SMAD3-212ENST00000559937 J3QL48 77 aa4.23□□□□□ -1.73
SMAD3-212ENST00000559937 HMCN2Q8NDA2 5059 aa4.21□□□□□ -1.74
SMAD3-212ENST00000559937 TPRXLQ17RH7 258 aa4.18□□□□□ -1.74
SMAD3-212ENST00000559937 TNXBP22105 4242 aa4.16□□□□□ -1.74
SMAD3-212ENST00000559937 A0A1B0GU33 70 aa4.15□□□□□ -1.75
SMAD3-212ENST00000559937 H1FX-AS1Q4G0G2 97 aa4.15□□□□□ -1.75
SMAD3-212ENST00000559937 LRP2P98164 4655 aa4.13□□□□□ -1.75
SMAD3-212ENST00000559937 H0YAA0 97 aa4.12□□□□□ -1.75
SMAD3-212ENST00000559937 S4R3F8 94 aa4.12□□□□□ -1.75
SMAD3-212ENST00000559937 KRTAP3-3Q9BYR6 98 aa4.11□□□□□ -1.75
SMAD3-212ENST00000559937 RBM12B-AS1Q9P1G2 102 aa4.07□□□□□ -1.76
SMAD3-212ENST00000559937 KRTAP10-6P60371 365 aaPredicted RBP4.05□□□□□ -1.76
SMAD3-212ENST00000559937 K7ERS5 55 aa4.04□□□□□ -1.76
SMAD3-212ENST00000559937 KRTAP3-2Q9BYR7 98 aa4.04□□□□□ -1.76
SMAD3-212ENST00000559937 SEC61BP60468 96 aaKnown RBP4.02□□□□□ -1.77
SMAD3-212ENST00000559937 CSAG1Q6PB30 78 aa4□□□□□ -1.77
SMAD3-212ENST00000559937 LPAP08519 4548 aa3.98□□□□□ -1.77
SMAD3-212ENST00000559937 PRAC1Q96KF2 57 aa3.98□□□□□ -1.77
SMAD3-212ENST00000559937 RNF213Q63HN8 5207 aa3.97□□□□□ -1.77
SMAD3-212ENST00000559937 ADM2Q7Z4H4 148 aa3.97□□□□□ -1.77
SMAD3-212ENST00000559937 P0C880 135 aa3.96□□□□□ -1.78
SMAD3-212ENST00000559937 KRTAP13-4Q3LI77 160 aa3.95□□□□□ -1.78
SMAD3-212ENST00000559937 M0QZ58 72 aa3.93□□□□□ -1.78
SMAD3-212ENST00000559937 ROMO1P60602 79 aa3.9□□□□□ -1.79
SMAD3-212ENST00000559937 LINC01554Q52M75 96 aa3.9□□□□□ -1.79
SMAD3-212ENST00000559937 A0A0D9SG42 100 aa3.89□□□□□ -1.79
SMAD3-212ENST00000559937 KRTAP25-1Q3LHN0 102 aa3.88□□□□□ -1.79
SMAD3-212ENST00000559937 KRTAP4-1Q9BYQ7 146 aa3.87□□□□□ -1.79
SMAD3-212ENST00000559937 MUC2Q02817 5179 aa3.87□□□□□ -1.79
SMAD3-212ENST00000559937 KRTAP12-1P59990 96 aa3.85□□□□□ -1.79
SMAD3-212ENST00000559937 LCE2DQ5TA82 110 aaPredicted RBP3.85□□□□□ -1.79
SMAD3-212ENST00000559937 KRTAP19-2Q3LHN2 52 aa3.84□□□□□ -1.79
SMAD3-212ENST00000559937 KRTAP9-6A0A140TA67 174 aa3.82□□□□□ -1.8
SMAD3-212ENST00000559937 KRTAP12-2P59991 146 aa3.82□□□□□ -1.8
SMAD3-212ENST00000559937 FAT4Q6V0I7 4981 aa3.81□□□□□ -1.8
SMAD3-212ENST00000559937 R4GN34 69 aa3.8□□□□□ -1.8
SMAD3-212ENST00000559937 SPINT4Q6UDR6 99 aa3.79□□□□□ -1.8
SMAD3-212ENST00000559937 MUC17Q685J3 4493 aa3.77□□□□□ -1.81
SMAD3-212ENST00000559937 KRTAP9-2Q9BYQ4 174 aa3.75□□□□□ -1.81
SMAD3-212ENST00000559937 CRIPTQ9P021 101 aa3.73□□□□□ -1.81
SMAD3-212ENST00000559937 LCE2AQ5TA79 106 aaPredicted RBP3.72□□□□□ -1.81
SMAD3-212ENST00000559937 LORP23490 312 aaPredicted RBP3.71□□□□□ -1.82
SMAD3-212ENST00000559937 C10orf95Q9H7T3 257 aa3.65□□□□□ -1.83
SMAD3-212ENST00000559937 LCE2CQ5TA81 110 aa3.64□□□□□ -1.83
SMAD3-212ENST00000559937 FLGP20930 4061 aaPredicted RBP3.62□□□□□ -1.83
SMAD3-212ENST00000559937 FSIP2Q5CZC0 6907 aa3.62□□□□□ -1.83
SMAD3-212ENST00000559937 CAMK2N1Q7Z7J9 78 aa3.58□□□□□ -1.84
SMAD3-212ENST00000559937 PP632Q6XCG6 107 aa3.56□□□□□ -1.84
SMAD3-212ENST00000559937 SPRR2GQ9BYE4 73 aa3.55□□□□□ -1.84
SMAD3-212ENST00000559937 MT1HP80294 61 aa3.54□□□□□ -1.84
SMAD3-212ENST00000559937 KRTAP23-1A1A580 65 aa3.51□□□□□ -1.85
SMAD3-212ENST00000559937 M0R2T5 61 aa3.51□□□□□ -1.85
SMAD3-212ENST00000559937 KRTAP15-1Q3LI76 137 aa3.5□□□□□ -1.85
SMAD3-212ENST00000559937 KRTAP19-1Q8IUB9 90 aa3.5□□□□□ -1.85
SMAD3-212ENST00000559937 TNP1P09430 55 aa3.48□□□□□ -1.85
SMAD3-212ENST00000559937 PLAC4Q8WY50 150 aa3.48□□□□□ -1.85
SMAD3-212ENST00000559937 MT2AP02795 61 aa3.47□□□□□ -1.85
SMAD3-212ENST00000559937 CRCT1Q9UGL9 99 aa3.47□□□□□ -1.85
SMAD3-212ENST00000559937 KRTAP9-8Q9BYQ0 159 aa3.45□□□□□ -1.86
SMAD3-212ENST00000559937 MT1FP04733 61 aa3.44□□□□□ -1.86
SMAD3-212ENST00000559937 KRTAP10-10P60014 251 aa3.44□□□□□ -1.86
SMAD3-212ENST00000559937 KRTAP19-8Q3LI54 63 aa3.44□□□□□ -1.86
SMAD3-212ENST00000559937 KRTAP9-7A8MTY7 169 aa3.36□□□□□ -1.87
SMAD3-212ENST00000559937 LOC100996750A0A140TA64 210 aa3.34□□□□□ -1.87
SMAD3-212ENST00000559937 MT1BP07438 61 aa3.34□□□□□ -1.87
SMAD3-212ENST00000559937 KRTAP4-6Q9BYQ5 205 aa3.34□□□□□ -1.87
SMAD3-212ENST00000559937 H3BS24 57 aa3.33□□□□□ -1.88
SMAD3-212ENST00000559937 KRTAP9-3Q9BYQ3 159 aa3.32□□□□□ -1.88
SMAD3-212ENST00000559937 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
SMAD3-212ENST00000559937 MT1XP80297 61 aa3.28□□□□□ -1.88
SMAD3-212ENST00000559937 SSPOA2VEC9 5147 aa3.28□□□□□ -1.88
SMAD3-212ENST00000559937 KRTAP10-5P60370 271 aa3.27□□□□□ -1.89
SMAD3-212ENST00000559937 USH2AO75445 5202 aa3.26□□□□□ -1.89
SMAD3-212ENST00000559937 LCE3AQ5TA76 89 aa3.26□□□□□ -1.89
SMAD3-212ENST00000559937 SPRR5A0A1B0GTR4 108 aa3.25□□□□□ -1.89
SMAD3-212ENST00000559937 KRTAP8-1Q8IUC2 63 aa3.25□□□□□ -1.89
SMAD3-212ENST00000559937 LUZP6Q538Z0 58 aa3.24□□□□□ -1.89
SMAD3-212ENST00000559937 PRO2289Q9P1D8 64 aa3.24□□□□□ -1.89
SMAD3-212ENST00000559937 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
SMAD3-212ENST00000559937 LCE2BO14633 110 aa3.22□□□□□ -1.89
SMAD3-212ENST00000559937 KRTAP10-12P60413 245 aa3.2□□□□□ -1.9
SMAD3-212ENST00000559937 MACF1Q9UPN3 7388 aaKnown RBP3.19□□□□□ -1.9
SMAD3-212ENST00000559937 FCGBPQ9Y6R7 5405 aaPredicted RBP3.19□□□□□ -1.9
SMAD3-212ENST00000559937 SYNE2Q8WXH0 6885 aaKnown RBP3.18□□□□□ -1.9
SMAD3-212ENST00000559937 KRTAP10-7P60409 375 aaPredicted RBP3.14□□□□□ -1.91
SMAD3-212ENST00000559937 KRTAP12-3P60328 96 aa3.13□□□□□ -1.91
SMAD3-212ENST00000559937 KRTAP19-6Q3LI70 58 aa3.11□□□□□ -1.91
SMAD3-212ENST00000559937 NEBP20929 6669 aa3.09□□□□□ -1.91
SMAD3-212ENST00000559937 A0A0A0MQY5 61 aa3.02□□□□□ -1.93
SMAD3-212ENST00000559937 KRTAP19-5Q3LI72 72 aa3.01□□□□□ -1.93
SMAD3-212ENST00000559937 KRTAP19-4Q3LI73 84 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms