RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 LCA10Q71F78 164 aa5.98□□□□□ -1.45
HERC1-205ENST00000559886 SERP1Q9Y6X1 66 aa5.98□□□□□ -1.45
HERC1-205ENST00000559886 FAT4Q6V0I7 4981 aa5.98□□□□□ -1.45
HERC1-205ENST00000559886 CHKB-CPT1BH3BT56 60 aa5.97□□□□□ -1.45
HERC1-205ENST00000559886 KRTAP3-3Q9BYR6 98 aa5.95□□□□□ -1.46
HERC1-205ENST00000559886 MT1HP80294 61 aa5.91□□□□□ -1.46
HERC1-205ENST00000559886 RPS28P62857 69 aaKnown RBP5.9□□□□□ -1.46
HERC1-205ENST00000559886 SPTSSBQ8NFR3 76 aa5.89□□□□□ -1.47
HERC1-205ENST00000559886 CSAG1Q6PB30 78 aa5.88□□□□□ -1.47
HERC1-205ENST00000559886 M0R2T5 61 aa5.83□□□□□ -1.48
HERC1-205ENST00000559886 LCE2AQ5TA79 106 aaPredicted RBP5.8□□□□□ -1.48
HERC1-205ENST00000559886 SMIM26A0A096LP01 95 aa5.79□□□□□ -1.48
HERC1-205ENST00000559886 SVIPQ8NHG7 77 aa5.76□□□□□ -1.49
HERC1-205ENST00000559886 H0YAA0 97 aa5.75□□□□□ -1.49
HERC1-205ENST00000559886 LINC01558Q9Y6Z2 57 aa5.74□□□□□ -1.49
HERC1-205ENST00000559886 Q1T7F1 81 aa5.72□□□□□ -1.49
HERC1-205ENST00000559886 KRTAP10-6P60371 365 aaPredicted RBP5.72□□□□□ -1.49
HERC1-205ENST00000559886 V9GYY9 64 aa5.71□□□□□ -1.49
HERC1-205ENST00000559886 ADM2Q7Z4H4 148 aa5.71□□□□□ -1.5
HERC1-205ENST00000559886 KRTAP3-2Q9BYR7 98 aa5.7□□□□□ -1.5
HERC1-205ENST00000559886 LORP23490 312 aaPredicted RBP5.69□□□□□ -1.5
HERC1-205ENST00000559886 SEC61GP60059 68 aa5.69□□□□□ -1.5
HERC1-205ENST00000559886 A0A1B0GU69 56 aa5.69□□□□□ -1.5
HERC1-205ENST00000559886 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
HERC1-205ENST00000559886 P0C880 135 aa5.66□□□□□ -1.5
HERC1-205ENST00000559886 PRR15LQ9BU68 103 aa5.65□□□□□ -1.5
HERC1-205ENST00000559886 MT2AP02795 61 aa5.65□□□□□ -1.51
HERC1-205ENST00000559886 LCE2DQ5TA82 110 aaPredicted RBP5.65□□□□□ -1.51
HERC1-205ENST00000559886 PSPHP1O15172 72 aa5.62□□□□□ -1.51
HERC1-205ENST00000559886 MT1FP04733 61 aa5.6□□□□□ -1.51
HERC1-205ENST00000559886 KRTAP10-10P60014 251 aa5.59□□□□□ -1.51
HERC1-205ENST00000559886 Q5VV11 94 aa5.57□□□□□ -1.52
HERC1-205ENST00000559886 A0A1B0GU33 70 aa5.56□□□□□ -1.52
HERC1-205ENST00000559886 CRIPTQ9P021 101 aa5.55□□□□□ -1.52
HERC1-205ENST00000559886 R4GN34 69 aa5.52□□□□□ -1.53
HERC1-205ENST00000559886 M0QZ58 72 aa5.51□□□□□ -1.53
HERC1-205ENST00000559886 KRTAP13-4Q3LI77 160 aa5.5□□□□□ -1.53
HERC1-205ENST00000559886 UQCR11O14957 56 aa5.49□□□□□ -1.53
HERC1-205ENST00000559886 KRTAP9-3Q9BYQ3 159 aa5.49□□□□□ -1.53
HERC1-205ENST00000559886 SPATA8Q6RVD6 105 aa5.47□□□□□ -1.53
HERC1-205ENST00000559886 SPRR2GQ9BYE4 73 aa5.47□□□□□ -1.53
HERC1-205ENST00000559886 KRTAP19-1Q8IUB9 90 aa5.47□□□□□ -1.53
HERC1-205ENST00000559886 A6NED7 52 aa5.45□□□□□ -1.54
HERC1-205ENST00000559886 MIR22HGQ0VDD5 57 aa5.41□□□□□ -1.54
HERC1-205ENST00000559886 LINC01554Q52M75 96 aa5.39□□□□□ -1.55
HERC1-205ENST00000559886 A8MU10 97 aa5.37□□□□□ -1.55
HERC1-205ENST00000559886 A0A0D9SG42 100 aa5.37□□□□□ -1.55
HERC1-205ENST00000559886 LCE2BO14633 110 aa5.35□□□□□ -1.55
HERC1-205ENST00000559886 KRTAP19-8Q3LI54 63 aa5.35□□□□□ -1.55
HERC1-205ENST00000559886 CDC42SE1Q9NRR8 79 aa5.34□□□□□ -1.56
HERC1-205ENST00000559886 A6NN06 94 aa5.32□□□□□ -1.56
HERC1-205ENST00000559886 MT1BP07438 61 aa5.29□□□□□ -1.56
HERC1-205ENST00000559886 KRTAP12-1P59990 96 aa5.29□□□□□ -1.56
HERC1-205ENST00000559886 BRK1Q8WUW1 75 aa5.28□□□□□ -1.56
HERC1-205ENST00000559886 KRTAP12-2P59991 146 aa5.26□□□□□ -1.57
HERC1-205ENST00000559886 SPINT4Q6UDR6 99 aa5.25□□□□□ -1.57
HERC1-205ENST00000559886 PLAC4Q8WY50 150 aa5.24□□□□□ -1.57
HERC1-205ENST00000559886 USH2AO75445 5202 aa5.24□□□□□ -1.57
HERC1-205ENST00000559886 K7ERS5 55 aa5.19□□□□□ -1.58
HERC1-205ENST00000559886 KRTAP9-2Q9BYQ4 174 aa5.17□□□□□ -1.58
HERC1-205ENST00000559886 CAMK2N1Q7Z7J9 78 aa5.14□□□□□ -1.59
HERC1-205ENST00000559886 FSIP2Q5CZC0 6907 aa5.1□□□□□ -1.59
HERC1-205ENST00000559886 PRO0628Q9UI54 55 aa5.09□□□□□ -1.59
HERC1-205ENST00000559886 SSPOA2VEC9 5147 aa5.08□□□□□ -1.6
HERC1-205ENST00000559886 MT1XP80297 61 aa5.08□□□□□ -1.6
HERC1-205ENST00000559886 KRTAP10-5P60370 271 aa5.07□□□□□ -1.6
HERC1-205ENST00000559886 KRTAP19-6Q3LI70 58 aa5.06□□□□□ -1.6
HERC1-205ENST00000559886 PRO2289Q9P1D8 64 aa5.04□□□□□ -1.6
HERC1-205ENST00000559886 C10orf95Q9H7T3 257 aa5.01□□□□□ -1.61
HERC1-205ENST00000559886 PMAIP1Q13794 54 aa4.99□□□□□ -1.61
HERC1-205ENST00000559886 CRCT1Q9UGL9 99 aa4.97□□□□□ -1.61
HERC1-205ENST00000559886 ROMO1P60602 79 aa4.96□□□□□ -1.62
HERC1-205ENST00000559886 FCGBPQ9Y6R7 5405 aaPredicted RBP4.92□□□□□ -1.62
HERC1-205ENST00000559886 TNP1P09430 55 aa4.88□□□□□ -1.63
HERC1-205ENST00000559886 KRTAP10-7P60409 375 aaPredicted RBP4.86□□□□□ -1.63
HERC1-205ENST00000559886 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
HERC1-205ENST00000559886 KRTAP9-6A0A140TA67 174 aa4.82□□□□□ -1.64
HERC1-205ENST00000559886 KRTAP10-12P60413 245 aa4.82□□□□□ -1.64
HERC1-205ENST00000559886 KTN1-AS1Q86SY8 53 aa4.73□□□□□ -1.65
HERC1-205ENST00000559886 KMT2DO14686 5537 aa4.73□□□□□ -1.65
HERC1-205ENST00000559886 KRTAP4-8A0A0G2JLE6 195 aa4.71□□□□□ -1.66
HERC1-205ENST00000559886 KRTAP4-8Q9BYQ9 185 aa4.71□□□□□ -1.66
HERC1-205ENST00000559886 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
HERC1-205ENST00000559886 LCE3AQ5TA76 89 aa4.7□□□□□ -1.66
HERC1-205ENST00000559886 MACF1Q9UPN3 7388 aaKnown RBP4.69□□□□□ -1.66
HERC1-205ENST00000559886 PRAC1Q96KF2 57 aa4.68□□□□□ -1.66
HERC1-205ENST00000559886 PP632Q6XCG6 107 aa4.66□□□□□ -1.66
HERC1-205ENST00000559886 KRTAP8-1Q8IUC2 63 aa4.61□□□□□ -1.67
HERC1-205ENST00000559886 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.61□□□□□ -1.67
HERC1-205ENST00000559886 KRTAP19-5Q3LI72 72 aa4.55□□□□□ -1.68
HERC1-205ENST00000559886 SYNE2Q8WXH0 6885 aaKnown RBP4.54□□□□□ -1.68
HERC1-205ENST00000559886 KRTAP19-7Q3SYF9 63 aa4.54□□□□□ -1.68
HERC1-205ENST00000559886 H3BS24 57 aa4.53□□□□□ -1.68
HERC1-205ENST00000559886 KRTAP12-3P60328 96 aa4.52□□□□□ -1.69
HERC1-205ENST00000559886 KRTAP5-9P26371 169 aa4.49□□□□□ -1.69
HERC1-205ENST00000559886 SPRR2FQ96RM1 72 aa4.47□□□□□ -1.69
HERC1-205ENST00000559886 KRTAP6-3Q3LI67 103 aa4.47□□□□□ -1.69
HERC1-205ENST00000559886 MT1EP04732 61 aa4.46□□□□□ -1.7
HERC1-205ENST00000559886 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
HERC1-205ENST00000559886 KRTAP9-7A8MTY7 169 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms