RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KRTAP3-2Q9BYR7 98 aa4.82□□□□□ -1.64
USP3-216ENST00000559873 NDUFC1O43677 76 aa4.81□□□□□ -1.64
USP3-216ENST00000559873 KRTAP9-8Q9BYQ0 159 aa4.8□□□□□ -1.64
USP3-216ENST00000559873 MT2AP02795 61 aa4.79□□□□□ -1.64
USP3-216ENST00000559873 SPANXA2-OT1Q8N9U9 137 aa4.79□□□□□ -1.64
USP3-216ENST00000559873 ACYP2P14621 99 aa4.77□□□□□ -1.65
USP3-216ENST00000559873 KRTAP10-10P60014 251 aa4.77□□□□□ -1.65
USP3-216ENST00000559873 KRTAP9-2Q9BYQ4 174 aa4.76□□□□□ -1.65
USP3-216ENST00000559873 MT1FP04733 61 aa4.74□□□□□ -1.65
USP3-216ENST00000559873 CHKB-CPT1BH3BT56 60 aa4.73□□□□□ -1.65
USP3-216ENST00000559873 SPTSSBQ8NFR3 76 aa4.73□□□□□ -1.65
USP3-216ENST00000559873 H0YAA0 97 aa4.69□□□□□ -1.66
USP3-216ENST00000559873 H7BZZ5 65 aa4.68□□□□□ -1.66
USP3-216ENST00000559873 CCDC179H3BU77 68 aa4.66□□□□□ -1.66
USP3-216ENST00000559873 KRTAP9-3Q9BYQ3 159 aa4.65□□□□□ -1.67
USP3-216ENST00000559873 CYSTM1Q9H1C7 97 aa4.65□□□□□ -1.67
USP3-216ENST00000559873 CRIPTQ9P021 101 aa4.64□□□□□ -1.67
USP3-216ENST00000559873 ATP5EP56381 51 aaPredicted RBP4.63□□□□□ -1.67
USP3-216ENST00000559873 COA5Q86WW8 74 aa4.63□□□□□ -1.67
USP3-216ENST00000559873 FSIP2Q5CZC0 6907 aa4.62□□□□□ -1.67
USP3-216ENST00000559873 ADM2Q7Z4H4 148 aa4.62□□□□□ -1.67
USP3-216ENST00000559873 LCE2BO14633 110 aa4.57□□□□□ -1.68
USP3-216ENST00000559873 TMEM258P61165 79 aa4.57□□□□□ -1.68
USP3-216ENST00000559873 SPRR2GQ9BYE4 73 aa4.55□□□□□ -1.68
USP3-216ENST00000559873 CRCT1Q9UGL9 99 aa4.55□□□□□ -1.68
USP3-216ENST00000559873 USH2AO75445 5202 aa4.55□□□□□ -1.68
USP3-216ENST00000559873 KRTAP9-6A0A140TA67 174 aa4.53□□□□□ -1.68
USP3-216ENST00000559873 KRTAP19-1Q8IUB9 90 aa4.53□□□□□ -1.68
USP3-216ENST00000559873 R4GN34 69 aa4.53□□□□□ -1.68
USP3-216ENST00000559873 P0C880 135 aa4.51□□□□□ -1.69
USP3-216ENST00000559873 SEC61GP60059 68 aa4.51□□□□□ -1.69
USP3-216ENST00000559873 Q5VV11 94 aa4.5□□□□□ -1.69
USP3-216ENST00000559873 M0QZ58 72 aa4.49□□□□□ -1.69
USP3-216ENST00000559873 SSPOA2VEC9 5147 aa4.49□□□□□ -1.69
USP3-216ENST00000559873 KRTAP19-8Q3LI54 63 aa4.48□□□□□ -1.69
USP3-216ENST00000559873 SERP1Q9Y6X1 66 aa4.48□□□□□ -1.69
USP3-216ENST00000559873 PCP4P48539 62 aa4.43□□□□□ -1.7
USP3-216ENST00000559873 A0A1B0GU69 56 aa4.41□□□□□ -1.7
USP3-216ENST00000559873 MT1BP07438 61 aa4.41□□□□□ -1.7
USP3-216ENST00000559873 KRTAP19-6Q3LI70 58 aa4.41□□□□□ -1.7
USP3-216ENST00000559873 LINC01554Q52M75 96 aa4.4□□□□□ -1.71
USP3-216ENST00000559873 PRR15LQ9BU68 103 aa4.4□□□□□ -1.71
USP3-216ENST00000559873 PLAC4Q8WY50 150 aa4.39□□□□□ -1.71
USP3-216ENST00000559873 A0A1B0GU33 70 aa4.35□□□□□ -1.71
USP3-216ENST00000559873 LOC100996750A0A140TA64 210 aa4.34□□□□□ -1.71
USP3-216ENST00000559873 A6NN06 94 aa4.34□□□□□ -1.71
USP3-216ENST00000559873 KRTAP4-6Q9BYQ5 205 aa4.34□□□□□ -1.71
USP3-216ENST00000559873 LINC01558Q9Y6Z2 57 aa4.33□□□□□ -1.72
USP3-216ENST00000559873 PRO2289Q9P1D8 64 aa4.32□□□□□ -1.72
USP3-216ENST00000559873 FCGBPQ9Y6R7 5405 aaPredicted RBP4.32□□□□□ -1.72
USP3-216ENST00000559873 MACF1Q9UPN3 7388 aaKnown RBP4.31□□□□□ -1.72
USP3-216ENST00000559873 V9GYY9 64 aa4.3□□□□□ -1.72
USP3-216ENST00000559873 KRTAP10-5P60370 271 aa4.29□□□□□ -1.72
USP3-216ENST00000559873 KRTAP13-4Q3LI77 160 aa4.29□□□□□ -1.72
USP3-216ENST00000559873 SMIM26A0A096LP01 95 aa4.27□□□□□ -1.73
USP3-216ENST00000559873 SPATA8Q6RVD6 105 aa4.27□□□□□ -1.73
USP3-216ENST00000559873 A0A0D9SG42 100 aa4.25□□□□□ -1.73
USP3-216ENST00000559873 RPS28P62857 69 aaKnown RBP4.23□□□□□ -1.73
USP3-216ENST00000559873 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.22□□□□□ -1.73
USP3-216ENST00000559873 UQCR11O14957 56 aa4.22□□□□□ -1.73
USP3-216ENST00000559873 Q1T7F1 81 aa4.22□□□□□ -1.73
USP3-216ENST00000559873 CAMK2N1Q7Z7J9 78 aa4.22□□□□□ -1.73
USP3-216ENST00000559873 MT1XP80297 61 aa4.21□□□□□ -1.74
USP3-216ENST00000559873 SYNE2Q8WXH0 6885 aaKnown RBP4.21□□□□□ -1.74
USP3-216ENST00000559873 SPINT4Q6UDR6 99 aa4.19□□□□□ -1.74
USP3-216ENST00000559873 PSPHP1O15172 72 aa4.17□□□□□ -1.74
USP3-216ENST00000559873 A8MU10 97 aa4.15□□□□□ -1.75
USP3-216ENST00000559873 KRTAP12-1P59990 96 aa4.14□□□□□ -1.75
USP3-216ENST00000559873 MIR22HGQ0VDD5 57 aa4.13□□□□□ -1.75
USP3-216ENST00000559873 KRTAP12-2P59991 146 aa4.11□□□□□ -1.75
USP3-216ENST00000559873 KRTAP9-7A8MTY7 169 aa4.1□□□□□ -1.75
USP3-216ENST00000559873 A6NED7 52 aa4.09□□□□□ -1.75
USP3-216ENST00000559873 K7ERS5 55 aa4.08□□□□□ -1.76
USP3-216ENST00000559873 KRTAP6-3Q3LI67 103 aa4.04□□□□□ -1.76
USP3-216ENST00000559873 KRTAP10-7P60409 375 aaPredicted RBP4.01□□□□□ -1.77
USP3-216ENST00000559873 KRTAP10-12P60413 245 aa4.01□□□□□ -1.77
USP3-216ENST00000559873 KRTAP8-1Q8IUC2 63 aa3.98□□□□□ -1.77
USP3-216ENST00000559873 KMT2DO14686 5537 aa3.96□□□□□ -1.78
USP3-216ENST00000559873 NEBP20929 6669 aa3.96□□□□□ -1.78
USP3-216ENST00000559873 TNP1P09430 55 aa3.95□□□□□ -1.78
USP3-216ENST00000559873 KRTAP5-9P26371 169 aa3.95□□□□□ -1.78
USP3-216ENST00000559873 CDC42SE1Q9NRR8 79 aa3.94□□□□□ -1.78
USP3-216ENST00000559873 C10orf95Q9H7T3 257 aa3.92□□□□□ -1.78
USP3-216ENST00000559873 KRTAP4-8A0A0G2JLE6 195 aa3.91□□□□□ -1.78
USP3-216ENST00000559873 SPRR2FQ96RM1 72 aa3.91□□□□□ -1.78
USP3-216ENST00000559873 KRTAP4-8Q9BYQ9 185 aa3.91□□□□□ -1.78
USP3-216ENST00000559873 MUC12Q9UKN1 5478 aa3.88□□□□□ -1.79
USP3-216ENST00000559873 KRTAP25-1Q3LHN0 102 aa3.85□□□□□ -1.79
USP3-216ENST00000559873 MDN1Q9NU22 5596 aa3.79□□□□□ -1.8
USP3-216ENST00000559873 SPRR2EP22531 72 aa3.79□□□□□ -1.8
USP3-216ENST00000559873 SPRR2BP35325 72 aa3.79□□□□□ -1.8
USP3-216ENST00000559873 SPRR2AP35326 72 aa3.79□□□□□ -1.8
USP3-216ENST00000559873 ROMO1P60602 79 aa3.79□□□□□ -1.8
USP3-216ENST00000559873 BRK1Q8WUW1 75 aa3.79□□□□□ -1.8
USP3-216ENST00000559873 LCE3AQ5TA76 89 aa3.78□□□□□ -1.8
USP3-216ENST00000559873 KRTAP19-7Q3SYF9 63 aa3.75□□□□□ -1.81
USP3-216ENST00000559873 LCE1AQ5T7P2 110 aa3.74□□□□□ -1.81
USP3-216ENST00000559873 MT1EP04732 61 aa3.73□□□□□ -1.81
USP3-216ENST00000559873 KRTAP19-5Q3LI72 72 aa3.73□□□□□ -1.81
USP3-216ENST00000559873 KRTAP23-1A1A580 65 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms