RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ANAPC13	Q9BS18	74 aa		5.95	□□□□□ -1.46
SHMT2-223	ENST00000556689	LOC101927531	A0A1B0GV80	90 aa		5.94	□□□□□ -1.46
SHMT2-223	ENST00000556689	SERP2	Q8N6R1	65 aa		5.94	□□□□□ -1.46
SHMT2-223	ENST00000556689	IGKV2D-30	A0A075B6S6	120 aa		5.93	□□□□□ -1.46
SHMT2-223	ENST00000556689	IGKV2-30	P06310	120 aa		5.93	□□□□□ -1.46
SHMT2-223	ENST00000556689		Q5W150	140 aa		5.93	□□□□□ -1.46
SHMT2-223	ENST00000556689	C1orf64	Q8NEQ6	169 aa		5.9	□□□□□ -1.46
SHMT2-223	ENST00000556689	LINC00208	Q96KT6	92 aa		5.9	□□□□□ -1.46
SHMT2-223	ENST00000556689	H1FX-AS1	Q4G0G2	97 aa		5.89	□□□□□ -1.47
SHMT2-223	ENST00000556689	KRTAP20-1	Q3LI63	56 aa		5.88	□□□□□ -1.47
SHMT2-223	ENST00000556689	COX7C	P15954	63 aa		5.86	□□□□□ -1.47
SHMT2-223	ENST00000556689		A6NN06	94 aa		5.85	□□□□□ -1.47
SHMT2-223	ENST00000556689	C20orf197	Q8N268	126 aa		5.84	□□□□□ -1.47
SHMT2-223	ENST00000556689	CYP4F30P	Q9H0H9	118 aa		5.83	□□□□□ -1.48
SHMT2-223	ENST00000556689	NDUFC1	O43677	76 aa		5.79	□□□□□ -1.48
SHMT2-223	ENST00000556689	KLKP1	Q107X0	134 aa		5.79	□□□□□ -1.48
SHMT2-223	ENST00000556689	SNURF	Q9Y675	71 aa		5.79	□□□□□ -1.48
SHMT2-223	ENST00000556689	MT1B	P07438	61 aa		5.75	□□□□□ -1.49
SHMT2-223	ENST00000556689		Q5VV11	94 aa		5.75	□□□□□ -1.49
SHMT2-223	ENST00000556689	MDN1	Q9NU22	5596 aa		5.74	□□□□□ -1.49
SHMT2-223	ENST00000556689	C4orf26	Q17RF5	130 aa		5.74	□□□□□ -1.49
SHMT2-223	ENST00000556689	KRTAP5-9	P26371	169 aa		5.73	□□□□□ -1.49
SHMT2-223	ENST00000556689		A8MUN3	132 aa		5.72	□□□□□ -1.49
SHMT2-223	ENST00000556689	KMT2D	O14686	5537 aa		5.71	□□□□□ -1.5
SHMT2-223	ENST00000556689	KRTAP10-5	P60370	271 aa		5.7	□□□□□ -1.5
SHMT2-223	ENST00000556689	CCDC179	H3BU77	68 aa		5.69	□□□□□ -1.5
SHMT2-223	ENST00000556689	PCP4	P48539	62 aa		5.69	□□□□□ -1.5
SHMT2-223	ENST00000556689	KRTAP19-8	Q3LI54	63 aa		5.69	□□□□□ -1.5
SHMT2-223	ENST00000556689	SPANXA2-OT1	Q8N9U9	137 aa		5.69	□□□□□ -1.5
SHMT2-223	ENST00000556689	SPRR2G	Q9BYE4	73 aa		5.68	□□□□□ -1.5
SHMT2-223	ENST00000556689	ATP5E	P56381	51 aa	Predicted RBP	5.66	□□□□□ -1.5
SHMT2-223	ENST00000556689	KRTAP2-3	P0C7H8	128 aa		5.65	□□□□□ -1.5
SHMT2-223	ENST00000556689	KRTAP2-4	Q9BYR9	128 aa		5.65	□□□□□ -1.5
SHMT2-223	ENST00000556689		H7BZZ5	65 aa		5.64	□□□□□ -1.51
SHMT2-223	ENST00000556689	DMAC1	Q96GE9	116 aa		5.64	□□□□□ -1.51
SHMT2-223	ENST00000556689	ACYP2	P14621	99 aa		5.63	□□□□□ -1.51
SHMT2-223	ENST00000556689	TMEM258	P61165	79 aa		5.63	□□□□□ -1.51
SHMT2-223	ENST00000556689		S4R3F8	94 aa		5.61	□□□□□ -1.51
SHMT2-223	ENST00000556689	CHKB-CPT1B	H3BT56	60 aa		5.6	□□□□□ -1.51
SHMT2-223	ENST00000556689	CSAG1	Q6PB30	78 aa		5.6	□□□□□ -1.51
SHMT2-223	ENST00000556689	CYSTM1	Q9H1C7	97 aa		5.59	□□□□□ -1.51
SHMT2-223	ENST00000556689	SPTSSB	Q8NFR3	76 aa		5.58	□□□□□ -1.52
SHMT2-223	ENST00000556689	KRTAP3-1	Q9BYR8	98 aa		5.55	□□□□□ -1.52
SHMT2-223	ENST00000556689	LCA10	Q71F78	164 aa		5.53	□□□□□ -1.52
SHMT2-223	ENST00000556689	COA5	Q86WW8	74 aa		5.5	□□□□□ -1.53
SHMT2-223	ENST00000556689	SPRR2E	P22531	72 aa		5.49	□□□□□ -1.53
SHMT2-223	ENST00000556689	SPRR2B	P35325	72 aa		5.49	□□□□□ -1.53
SHMT2-223	ENST00000556689	SPRR2A	P35326	72 aa		5.49	□□□□□ -1.53
SHMT2-223	ENST00000556689	SPRR2F	Q96RM1	72 aa		5.49	□□□□□ -1.53
SHMT2-223	ENST00000556689	KRTAP2-2	Q9BYT5	123 aa		5.46	□□□□□ -1.54
SHMT2-223	ENST00000556689	KRTAP2-1	Q9BYU5	128 aa		5.46	□□□□□ -1.54
SHMT2-223	ENST00000556689	CRIPT	Q9P021	101 aa		5.46	□□□□□ -1.54
SHMT2-223	ENST00000556689	KRTAP3-3	Q9BYR6	98 aa		5.42	□□□□□ -1.54
SHMT2-223	ENST00000556689	SERP1	Q9Y6X1	66 aa		5.42	□□□□□ -1.54
SHMT2-223	ENST00000556689	SEC61G	P60059	68 aa		5.38	□□□□□ -1.55
SHMT2-223	ENST00000556689	LCE1A	Q5T7P2	110 aa		5.37	□□□□□ -1.55
SHMT2-223	ENST00000556689	PRO2289	Q9P1D8	64 aa		5.37	□□□□□ -1.55
SHMT2-223	ENST00000556689	KRTAP8-1	Q8IUC2	63 aa		5.36	□□□□□ -1.55
SHMT2-223	ENST00000556689		H0YAA0	97 aa		5.33	□□□□□ -1.56
SHMT2-223	ENST00000556689	SPRR2D	P22532	72 aa		5.31	□□□□□ -1.56
SHMT2-223	ENST00000556689	PRR15L	Q9BU68	103 aa		5.31	□□□□□ -1.56
SHMT2-223	ENST00000556689	MT1X	P80297	61 aa		5.3	□□□□□ -1.56
SHMT2-223	ENST00000556689	ADM2	Q7Z4H4	148 aa		5.29	□□□□□ -1.56
SHMT2-223	ENST00000556689		V9GYY9	64 aa		5.29	□□□□□ -1.56
SHMT2-223	ENST00000556689	RPS28	P62857	69 aa	Known RBP	5.28	□□□□□ -1.56
SHMT2-223	ENST00000556689		A0A1B0GU69	56 aa		5.27	□□□□□ -1.57
SHMT2-223	ENST00000556689	SMIM26	A0A096LP01	95 aa		5.26	□□□□□ -1.57
SHMT2-223	ENST00000556689	PLAC4	Q8WY50	150 aa		5.26	□□□□□ -1.57
SHMT2-223	ENST00000556689	KRTAP12-2	P59991	146 aa		5.25	□□□□□ -1.57
SHMT2-223	ENST00000556689	KRTAP4-8	A0A0G2JLE6	195 aa		5.2	□□□□□ -1.58
SHMT2-223	ENST00000556689	LCE3B	Q5TA77	95 aa		5.2	□□□□□ -1.58
SHMT2-223	ENST00000556689	KRTAP4-8	Q9BYQ9	185 aa		5.2	□□□□□ -1.58
SHMT2-223	ENST00000556689	LINC01558	Q9Y6Z2	57 aa		5.2	□□□□□ -1.58
SHMT2-223	ENST00000556689		R4GN34	69 aa		5.19	□□□□□ -1.58
SHMT2-223	ENST00000556689		Q1T7F1	81 aa		5.16	□□□□□ -1.58
SHMT2-223	ENST00000556689		P0C880	135 aa		5.15	□□□□□ -1.59
SHMT2-223	ENST00000556689		A0A1B0GU33	70 aa		5.13	□□□□□ -1.59
SHMT2-223	ENST00000556689		M0QZ58	72 aa		5.13	□□□□□ -1.59
SHMT2-223	ENST00000556689	KRTAP3-2	Q9BYR7	98 aa		5.12	□□□□□ -1.59
SHMT2-223	ENST00000556689	PSPHP1	O15172	72 aa		5.09	□□□□□ -1.59
SHMT2-223	ENST00000556689	GPR98	Q8WXG9	6306 aa		5.08	□□□□□ -1.6
SHMT2-223	ENST00000556689	UQCR11	O14957	56 aa		5.07	□□□□□ -1.6
SHMT2-223	ENST00000556689	KRTAP10-7	P60409	375 aa	Predicted RBP	5.06	□□□□□ -1.6
SHMT2-223	ENST00000556689	LINC01554	Q52M75	96 aa		5.05	□□□□□ -1.6
SHMT2-223	ENST00000556689	KRTAP10-12	P60413	245 aa		5.04	□□□□□ -1.6
SHMT2-223	ENST00000556689	DST	Q03001	7570 aa	Known RBP	5.03	□□□□□ -1.6
SHMT2-223	ENST00000556689		A6NED7	52 aa		5.02	□□□□□ -1.61
SHMT2-223	ENST00000556689	SPATA8	Q6RVD6	105 aa		4.98	□□□□□ -1.61
SHMT2-223	ENST00000556689	MIR22HG	Q0VDD5	57 aa		4.97	□□□□□ -1.61
SHMT2-223	ENST00000556689		A0A0D9SG42	100 aa		4.96	□□□□□ -1.62
SHMT2-223	ENST00000556689	KRTAP13-4	Q3LI77	160 aa		4.94	□□□□□ -1.62
SHMT2-223	ENST00000556689		K7ERS5	55 aa		4.93	□□□□□ -1.62
SHMT2-223	ENST00000556689	KRTAP4-9	Q9BYQ8	210 aa		4.93	□□□□□ -1.62
SHMT2-223	ENST00000556689	SPINT4	Q6UDR6	99 aa		4.88	□□□□□ -1.63
SHMT2-223	ENST00000556689		A8MU10	97 aa		4.87	□□□□□ -1.63
SHMT2-223	ENST00000556689	CAMK2N1	Q7Z7J9	78 aa		4.87	□□□□□ -1.63
SHMT2-223	ENST00000556689	CDC42SE1	Q9NRR8	79 aa		4.85	□□□□□ -1.63
SHMT2-223	ENST00000556689	LCE5A	Q5TCM9	118 aa		4.82	□□□□□ -1.64
SHMT2-223	ENST00000556689	KRTAP12-1	P59990	96 aa		4.8	□□□□□ -1.64
SHMT2-223	ENST00000556689	BRK1	Q8WUW1	75 aa		4.8	□□□□□ -1.64

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