RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 DMBT1Q9UGM3 2413 aaPredicted RBP5.32□□□□□ -1.56
TMEM260-211ENST00000556648 RPL37P61927 97 aaKnown RBP5.31□□□□□ -1.56
TMEM260-211ENST00000556648 A0A1B0GU69 56 aa5.3□□□□□ -1.56
TMEM260-211ENST00000556648 ATP11AUNQ6ZP68 121 aa5.29□□□□□ -1.56
TMEM260-211ENST00000556648 CDC42SE1Q9NRR8 79 aa5.28□□□□□ -1.56
TMEM260-211ENST00000556648 KRTAP4-8Q9BYQ9 185 aa5.27□□□□□ -1.57
TMEM260-211ENST00000556648 H3BS24 57 aa5.26□□□□□ -1.57
TMEM260-211ENST00000556648 SPTSSBQ8NFR3 76 aa5.26□□□□□ -1.57
TMEM260-211ENST00000556648 COX6B2Q6YFQ2 88 aa5.25□□□□□ -1.57
TMEM260-211ENST00000556648 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.19□□□□□ -1.58
TMEM260-211ENST00000556648 PMAIP1Q13794 54 aa5.19□□□□□ -1.58
TMEM260-211ENST00000556648 ABCA13Q86UQ4 5058 aa5.18□□□□□ -1.58
TMEM260-211ENST00000556648 KRTAP9-2Q9BYQ4 174 aa5.17□□□□□ -1.58
TMEM260-211ENST00000556648 A6NN06 94 aa5.16□□□□□ -1.58
TMEM260-211ENST00000556648 MIR22HGQ0VDD5 57 aa5.16□□□□□ -1.58
TMEM260-211ENST00000556648 TPRXLQ17RH7 258 aa5.16□□□□□ -1.58
TMEM260-211ENST00000556648 SPATA8Q6RVD6 105 aa5.16□□□□□ -1.58
TMEM260-211ENST00000556648 UQCR11O14957 56 aa5.16□□□□□ -1.58
TMEM260-211ENST00000556648 KRTAP9-6A0A140TA67 174 aa5.15□□□□□ -1.58
TMEM260-211ENST00000556648 SEC61GP60059 68 aa5.14□□□□□ -1.59
TMEM260-211ENST00000556648 LPAP08519 4548 aa5.13□□□□□ -1.59
TMEM260-211ENST00000556648 LRP2P98164 4655 aa5.11□□□□□ -1.59
TMEM260-211ENST00000556648 H0YAA0 97 aa5.1□□□□□ -1.59
TMEM260-211ENST00000556648 S4R3F8 94 aa5.1□□□□□ -1.59
TMEM260-211ENST00000556648 H1FX-AS1Q4G0G2 97 aa5.08□□□□□ -1.6
TMEM260-211ENST00000556648 A0A1B0GU33 70 aa5.07□□□□□ -1.6
TMEM260-211ENST00000556648 BIRC6Q9NR09 4857 aa5.06□□□□□ -1.6
TMEM260-211ENST00000556648 HERC2O95714 4834 aa5.05□□□□□ -1.6
TMEM260-211ENST00000556648 KTN1-AS1Q86SY8 53 aa5.04□□□□□ -1.6
TMEM260-211ENST00000556648 KRTAP10-6P60371 365 aaPredicted RBP5.04□□□□□ -1.6
TMEM260-211ENST00000556648 LCE3BQ5TA77 95 aa5.01□□□□□ -1.61
TMEM260-211ENST00000556648 KRTAP4-1Q9BYQ7 146 aa5.01□□□□□ -1.61
TMEM260-211ENST00000556648 RBM12B-AS1Q9P1G2 102 aa4.99□□□□□ -1.61
TMEM260-211ENST00000556648 P0C880 135 aa4.98□□□□□ -1.61
TMEM260-211ENST00000556648 KRTAP13-4Q3LI77 160 aa4.98□□□□□ -1.61
TMEM260-211ENST00000556648 ADM2Q7Z4H4 148 aa4.97□□□□□ -1.61
TMEM260-211ENST00000556648 SEC61BP60468 96 aaKnown RBP4.96□□□□□ -1.62
TMEM260-211ENST00000556648 KRTAP4-8A0A0G2JLE6 195 aa4.96□□□□□ -1.62
TMEM260-211ENST00000556648 PRAC1Q96KF2 57 aa4.95□□□□□ -1.62
TMEM260-211ENST00000556648 MUC17Q685J3 4493 aa4.92□□□□□ -1.62
TMEM260-211ENST00000556648 A0A0D9SG42 100 aa4.9□□□□□ -1.63
TMEM260-211ENST00000556648 CSAG1Q6PB30 78 aa4.9□□□□□ -1.63
TMEM260-211ENST00000556648 KRTAP9-9Q9BYP9 154 aa4.9□□□□□ -1.63
TMEM260-211ENST00000556648 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
TMEM260-211ENST00000556648 PCLOQ9Y6V0 5065 aa4.88□□□□□ -1.63
TMEM260-211ENST00000556648 KRTAP19-2Q3LHN2 52 aa4.87□□□□□ -1.63
TMEM260-211ENST00000556648 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
TMEM260-211ENST00000556648 KRTAP4-12Q9BQ66 201 aa4.82□□□□□ -1.64
TMEM260-211ENST00000556648 K7ERS5 55 aa4.79□□□□□ -1.64
TMEM260-211ENST00000556648 KRTAP12-2P59991 146 aa4.79□□□□□ -1.64
TMEM260-211ENST00000556648 HERC1Q15751 4861 aa4.78□□□□□ -1.64
TMEM260-211ENST00000556648 HMCN2Q8NDA2 5059 aa4.77□□□□□ -1.65
TMEM260-211ENST00000556648 KRTAP12-1P59990 96 aa4.75□□□□□ -1.65
TMEM260-211ENST00000556648 M0QZ58 72 aa4.73□□□□□ -1.65
TMEM260-211ENST00000556648 SPINT4Q6UDR6 99 aa4.73□□□□□ -1.65
TMEM260-211ENST00000556648 CRIPTQ9P021 101 aa4.73□□□□□ -1.65
TMEM260-211ENST00000556648 MUC2Q02817 5179 aa4.72□□□□□ -1.65
TMEM260-211ENST00000556648 ROMO1P60602 79 aa4.71□□□□□ -1.66
TMEM260-211ENST00000556648 LINC01554Q52M75 96 aa4.7□□□□□ -1.66
TMEM260-211ENST00000556648 FLGP20930 4061 aaPredicted RBP4.68□□□□□ -1.66
TMEM260-211ENST00000556648 R4GN34 69 aa4.68□□□□□ -1.66
TMEM260-211ENST00000556648 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
TMEM260-211ENST00000556648 LCE1DQ5T752 114 aa4.67□□□□□ -1.66
TMEM260-211ENST00000556648 KRTAP4-2Q9BYR5 136 aa4.62□□□□□ -1.67
TMEM260-211ENST00000556648 C10orf95Q9H7T3 257 aa4.6□□□□□ -1.67
TMEM260-211ENST00000556648 KRTAP4-9Q9BYQ8 210 aa4.6□□□□□ -1.67
TMEM260-211ENST00000556648 RNF213Q63HN8 5207 aa4.58□□□□□ -1.68
TMEM260-211ENST00000556648 UBR4Q5T4S7 5183 aa4.56□□□□□ -1.68
TMEM260-211ENST00000556648 KRTAP19-4Q3LI73 84 aa4.55□□□□□ -1.68
TMEM260-211ENST00000556648 KRTAP19-1Q8IUB9 90 aa4.55□□□□□ -1.68
TMEM260-211ENST00000556648 KRTAP9-8Q9BYQ0 159 aa4.53□□□□□ -1.68
TMEM260-211ENST00000556648 MT1HP80294 61 aa4.53□□□□□ -1.68
TMEM260-211ENST00000556648 KRTAP5-3Q6L8H2 238 aa4.51□□□□□ -1.69
TMEM260-211ENST00000556648 FAT4Q6V0I7 4981 aa4.51□□□□□ -1.69
TMEM260-211ENST00000556648 M0R2T5 61 aa4.48□□□□□ -1.69
TMEM260-211ENST00000556648 CAMK2N1Q7Z7J9 78 aa4.43□□□□□ -1.7
TMEM260-211ENST00000556648 MT2AP02795 61 aa4.42□□□□□ -1.7
TMEM260-211ENST00000556648 MT1FP04733 61 aa4.42□□□□□ -1.7
TMEM260-211ENST00000556648 SPRR2GQ9BYE4 73 aa4.39□□□□□ -1.71
TMEM260-211ENST00000556648 KRTAP23-1A1A580 65 aa4.37□□□□□ -1.71
TMEM260-211ENST00000556648 KRTAP10-10P60014 251 aa4.37□□□□□ -1.71
TMEM260-211ENST00000556648 KRTAP4-11Q9BYQ6 195 aa4.34□□□□□ -1.71
TMEM260-211ENST00000556648 PLAC4Q8WY50 150 aa4.28□□□□□ -1.72
TMEM260-211ENST00000556648 KRTAP19-8Q3LI54 63 aa4.24□□□□□ -1.73
TMEM260-211ENST00000556648 MT1BP07438 61 aa4.23□□□□□ -1.73
TMEM260-211ENST00000556648 KRTAP15-1Q3LI76 137 aa4.23□□□□□ -1.73
TMEM260-211ENST00000556648 TNP1P09430 55 aa4.22□□□□□ -1.73
TMEM260-211ENST00000556648 KRTAP9-3Q9BYQ3 159 aa4.22□□□□□ -1.73
TMEM260-211ENST00000556648 LCE4AQ5TA78 99 aa4.2□□□□□ -1.74
TMEM260-211ENST00000556648 PP632Q6XCG6 107 aa4.19□□□□□ -1.74
TMEM260-211ENST00000556648 KRTAP9-7A8MTY7 169 aa4.18□□□□□ -1.74
TMEM260-211ENST00000556648 KRTAP10-5P60370 271 aa4.15□□□□□ -1.75
TMEM260-211ENST00000556648 MT1XP80297 61 aa4.15□□□□□ -1.75
TMEM260-211ENST00000556648 LCE3AQ5TA76 89 aa4.1□□□□□ -1.75
TMEM260-211ENST00000556648 NDUFAF8A1L188 74 aa4.04□□□□□ -1.76
TMEM260-211ENST00000556648 KRTAP10-7P60409 375 aaPredicted RBP4.03□□□□□ -1.76
TMEM260-211ENST00000556648 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
TMEM260-211ENST00000556648 KRTAP10-12P60413 245 aa3.98□□□□□ -1.77
TMEM260-211ENST00000556648 KRTAP8-1Q8IUC2 63 aa3.95□□□□□ -1.78
TMEM260-211ENST00000556648 PRO2289Q9P1D8 64 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 167.1 ms