RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 KRTAP3-3Q9BYR6 98 aa6.86□□□□□ -1.31
VIPAS39-208ENST00000556412 KRTAP3-2Q9BYR7 98 aa6.86□□□□□ -1.31
VIPAS39-208ENST00000556412 FLGP20930 4061 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-208ENST00000556412 KRTAP10-6P60371 365 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-208ENST00000556412 SMIM26A0A096LP01 95 aa6.84□□□□□ -1.31
VIPAS39-208ENST00000556412 ATP5EP56381 51 aaPredicted RBP6.84□□□□□ -1.31
VIPAS39-208ENST00000556412 S4R3F8 94 aa6.82□□□□□ -1.32
VIPAS39-208ENST00000556412 LORP23490 312 aaPredicted RBP6.8□□□□□ -1.32
VIPAS39-208ENST00000556412 A8MUN3 132 aa6.78□□□□□ -1.32
VIPAS39-208ENST00000556412 LCA10Q71F78 164 aa6.77□□□□□ -1.33
VIPAS39-208ENST00000556412 DMAC1Q96GE9 116 aa6.73□□□□□ -1.33
VIPAS39-208ENST00000556412 CSAG1Q6PB30 78 aa6.71□□□□□ -1.34
VIPAS39-208ENST00000556412 KRTAP9-8Q9BYQ0 159 aa6.7□□□□□ -1.34
VIPAS39-208ENST00000556412 V9GYY9 64 aa6.7□□□□□ -1.34
VIPAS39-208ENST00000556412 SEC61GP60059 68 aa6.68□□□□□ -1.34
VIPAS39-208ENST00000556412 MT2AP02795 61 aa6.67□□□□□ -1.34
VIPAS39-208ENST00000556412 ACYP2P14621 99 aa6.65□□□□□ -1.34
VIPAS39-208ENST00000556412 SPANXA2-OT1Q8N9U9 137 aa6.65□□□□□ -1.34
VIPAS39-208ENST00000556412 KRTAP10-10P60014 251 aa6.64□□□□□ -1.35
VIPAS39-208ENST00000556412 BRK1Q8WUW1 75 aa6.64□□□□□ -1.35
VIPAS39-208ENST00000556412 MT1FP04733 61 aa6.62□□□□□ -1.35
VIPAS39-208ENST00000556412 CHKB-CPT1BH3BT56 60 aa6.59□□□□□ -1.35
VIPAS39-208ENST00000556412 KRTAP9-2Q9BYQ4 174 aa6.55□□□□□ -1.36
VIPAS39-208ENST00000556412 Q1T7F1 81 aa6.53□□□□□ -1.36
VIPAS39-208ENST00000556412 PMAIP1Q13794 54 aa6.52□□□□□ -1.37
VIPAS39-208ENST00000556412 SPTSSBQ8NFR3 76 aa6.5□□□□□ -1.37
VIPAS39-208ENST00000556412 COA5Q86WW8 74 aa6.49□□□□□ -1.37
VIPAS39-208ENST00000556412 KRTAP9-3Q9BYQ3 159 aa6.48□□□□□ -1.37
VIPAS39-208ENST00000556412 ADM2Q7Z4H4 148 aa6.47□□□□□ -1.37
VIPAS39-208ENST00000556412 H0YAA0 97 aa6.46□□□□□ -1.38
VIPAS39-208ENST00000556412 LCE2BO14633 110 aa6.38□□□□□ -1.39
VIPAS39-208ENST00000556412 P0C880 135 aa6.36□□□□□ -1.39
VIPAS39-208ENST00000556412 FSIP2Q5CZC0 6907 aa6.34□□□□□ -1.39
VIPAS39-208ENST00000556412 CRIPTQ9P021 101 aa6.34□□□□□ -1.4
VIPAS39-208ENST00000556412 KRTAP19-1Q8IUB9 90 aa6.33□□□□□ -1.4
VIPAS39-208ENST00000556412 KTN1-AS1Q86SY8 53 aa6.32□□□□□ -1.4
VIPAS39-208ENST00000556412 PSPHP1O15172 72 aa6.31□□□□□ -1.4
VIPAS39-208ENST00000556412 Q5VV11 94 aa6.31□□□□□ -1.4
VIPAS39-208ENST00000556412 SPRR2GQ9BYE4 73 aa6.29□□□□□ -1.4
VIPAS39-208ENST00000556412 R4GN34 69 aa6.28□□□□□ -1.4
VIPAS39-208ENST00000556412 USH2AO75445 5202 aa6.27□□□□□ -1.41
VIPAS39-208ENST00000556412 M0QZ58 72 aa6.25□□□□□ -1.41
VIPAS39-208ENST00000556412 CRCT1Q9UGL9 99 aa6.25□□□□□ -1.41
VIPAS39-208ENST00000556412 A6NN06 94 aa6.22□□□□□ -1.41
VIPAS39-208ENST00000556412 LINC01558Q9Y6Z2 57 aa6.21□□□□□ -1.42
VIPAS39-208ENST00000556412 KRTAP9-6A0A140TA67 174 aa6.2□□□□□ -1.42
VIPAS39-208ENST00000556412 KRTAP19-8Q3LI54 63 aa6.19□□□□□ -1.42
VIPAS39-208ENST00000556412 A8MU10 97 aa6.18□□□□□ -1.42
VIPAS39-208ENST00000556412 LINC01554Q52M75 96 aa6.18□□□□□ -1.42
VIPAS39-208ENST00000556412 PRR15LQ9BU68 103 aa6.18□□□□□ -1.42
VIPAS39-208ENST00000556412 CDC42SE1Q9NRR8 79 aa6.18□□□□□ -1.42
VIPAS39-208ENST00000556412 A0A1B0GU69 56 aa6.17□□□□□ -1.42
VIPAS39-208ENST00000556412 MT1BP07438 61 aa6.16□□□□□ -1.42
VIPAS39-208ENST00000556412 SSPOA2VEC9 5147 aa6.14□□□□□ -1.43
VIPAS39-208ENST00000556412 A6NED7 52 aa6.11□□□□□ -1.43
VIPAS39-208ENST00000556412 A0A1B0GU33 70 aa6.09□□□□□ -1.43
VIPAS39-208ENST00000556412 KRTAP13-4Q3LI77 160 aa6.09□□□□□ -1.44
VIPAS39-208ENST00000556412 KRTAP19-6Q3LI70 58 aa6.07□□□□□ -1.44
VIPAS39-208ENST00000556412 PLAC4Q8WY50 150 aa6.06□□□□□ -1.44
VIPAS39-208ENST00000556412 SPATA8Q6RVD6 105 aa6.04□□□□□ -1.44
VIPAS39-208ENST00000556412 A0A0D9SG42 100 aa6□□□□□ -1.45
VIPAS39-208ENST00000556412 FCGBPQ9Y6R7 5405 aaPredicted RBP5.95□□□□□ -1.46
VIPAS39-208ENST00000556412 KRTAP10-5P60370 271 aa5.93□□□□□ -1.46
VIPAS39-208ENST00000556412 PRO2289Q9P1D8 64 aa5.9□□□□□ -1.47
VIPAS39-208ENST00000556412 SPINT4Q6UDR6 99 aa5.89□□□□□ -1.47
VIPAS39-208ENST00000556412 UQCR11O14957 56 aa5.88□□□□□ -1.47
VIPAS39-208ENST00000556412 MT1XP80297 61 aa5.88□□□□□ -1.47
VIPAS39-208ENST00000556412 CAMK2N1Q7Z7J9 78 aa5.85□□□□□ -1.47
VIPAS39-208ENST00000556412 KRTAP12-1P59990 96 aa5.83□□□□□ -1.48
VIPAS39-208ENST00000556412 PRAC1Q96KF2 57 aa5.82□□□□□ -1.48
VIPAS39-208ENST00000556412 KRTAP12-2P59991 146 aa5.81□□□□□ -1.48
VIPAS39-208ENST00000556412 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.8□□□□□ -1.48
VIPAS39-208ENST00000556412 MIR22HGQ0VDD5 57 aa5.8□□□□□ -1.48
VIPAS39-208ENST00000556412 H3BS24 57 aa5.78□□□□□ -1.48
VIPAS39-208ENST00000556412 MACF1Q9UPN3 7388 aaKnown RBP5.73□□□□□ -1.49
VIPAS39-208ENST00000556412 KRTAP10-7P60409 375 aaPredicted RBP5.64□□□□□ -1.51
VIPAS39-208ENST00000556412 KRTAP9-7A8MTY7 169 aa5.62□□□□□ -1.51
VIPAS39-208ENST00000556412 K7ERS5 55 aa5.62□□□□□ -1.51
VIPAS39-208ENST00000556412 SYNE2Q8WXH0 6885 aaKnown RBP5.61□□□□□ -1.51
VIPAS39-208ENST00000556412 KRTAP10-12P60413 245 aa5.56□□□□□ -1.52
VIPAS39-208ENST00000556412 C10orf95Q9H7T3 257 aa5.53□□□□□ -1.52
VIPAS39-208ENST00000556412 KRTAP4-8A0A0G2JLE6 195 aa5.53□□□□□ -1.52
VIPAS39-208ENST00000556412 KRTAP4-8Q9BYQ9 185 aa5.53□□□□□ -1.52
VIPAS39-208ENST00000556412 KRTAP25-1Q3LHN0 102 aa5.52□□□□□ -1.53
VIPAS39-208ENST00000556412 KRTAP6-3Q3LI67 103 aa5.52□□□□□ -1.53
VIPAS39-208ENST00000556412 KRTAP8-1Q8IUC2 63 aa5.51□□□□□ -1.53
VIPAS39-208ENST00000556412 KMT2DO14686 5537 aa5.5□□□□□ -1.53
VIPAS39-208ENST00000556412 ROMO1P60602 79 aa5.49□□□□□ -1.53
VIPAS39-208ENST00000556412 TNP1P09430 55 aa5.46□□□□□ -1.54
VIPAS39-208ENST00000556412 KRTAP5-9P26371 169 aa5.41□□□□□ -1.54
VIPAS39-208ENST00000556412 SPRR2FQ96RM1 72 aa5.41□□□□□ -1.54
VIPAS39-208ENST00000556412 LCE3AQ5TA76 89 aa5.31□□□□□ -1.56
VIPAS39-208ENST00000556412 MUC12Q9UKN1 5478 aa5.28□□□□□ -1.56
VIPAS39-208ENST00000556412 SPRR2EP22531 72 aa5.24□□□□□ -1.57
VIPAS39-208ENST00000556412 SPRR2BP35325 72 aa5.24□□□□□ -1.57
VIPAS39-208ENST00000556412 SPRR2AP35326 72 aa5.24□□□□□ -1.57
VIPAS39-208ENST00000556412 KRTAP19-5Q3LI72 72 aa5.23□□□□□ -1.57
VIPAS39-208ENST00000556412 KRTAP19-7Q3SYF9 63 aa5.23□□□□□ -1.57
VIPAS39-208ENST00000556412 MDN1Q9NU22 5596 aa5.22□□□□□ -1.57
VIPAS39-208ENST00000556412 NEBP20929 6669 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms