RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 KRTAP3-3Q9BYR6 98 aa5.84□□□□□ -1.47
SHMT2-209ENST00000553949 CSAG1Q6PB30 78 aa5.83□□□□□ -1.48
SHMT2-209ENST00000553949 SPANXA2-OT1Q8N9U9 137 aa5.82□□□□□ -1.48
SHMT2-209ENST00000553949 NDUFC1O43677 76 aa5.81□□□□□ -1.48
SHMT2-209ENST00000553949 MT2AP02795 61 aa5.81□□□□□ -1.48
SHMT2-209ENST00000553949 CYSTM1Q9H1C7 97 aa5.8□□□□□ -1.48
SHMT2-209ENST00000553949 ACYP2P14621 99 aa5.79□□□□□ -1.48
SHMT2-209ENST00000553949 CCDC179H3BU77 68 aa5.78□□□□□ -1.48
SHMT2-209ENST00000553949 H7BZZ5 65 aa5.77□□□□□ -1.49
SHMT2-209ENST00000553949 MT1FP04733 61 aa5.77□□□□□ -1.49
SHMT2-209ENST00000553949 KRTAP10-10P60014 251 aa5.75□□□□□ -1.49
SHMT2-209ENST00000553949 LCE2DQ5TA82 110 aaPredicted RBP5.72□□□□□ -1.49
SHMT2-209ENST00000553949 CHKB-CPT1BH3BT56 60 aa5.69□□□□□ -1.5
SHMT2-209ENST00000553949 KRTAP9-3Q9BYQ3 159 aa5.66□□□□□ -1.5
SHMT2-209ENST00000553949 FSIP2Q5CZC0 6907 aa5.65□□□□□ -1.5
SHMT2-209ENST00000553949 H0YAA0 97 aa5.65□□□□□ -1.5
SHMT2-209ENST00000553949 SPTSSBQ8NFR3 76 aa5.65□□□□□ -1.5
SHMT2-209ENST00000553949 COA5Q86WW8 74 aa5.64□□□□□ -1.51
SHMT2-209ENST00000553949 ADM2Q7Z4H4 148 aa5.62□□□□□ -1.51
SHMT2-209ENST00000553949 ATP5EP56381 51 aaPredicted RBP5.59□□□□□ -1.51
SHMT2-209ENST00000553949 CRCT1Q9UGL9 99 aa5.59□□□□□ -1.51
SHMT2-209ENST00000553949 TMEM258P61165 79 aa5.58□□□□□ -1.52
SHMT2-209ENST00000553949 LCE2BO14633 110 aa5.56□□□□□ -1.52
SHMT2-209ENST00000553949 KRTAP3-2Q9BYR7 98 aa5.55□□□□□ -1.52
SHMT2-209ENST00000553949 CRIPTQ9P021 101 aa5.55□□□□□ -1.52
SHMT2-209ENST00000553949 USH2AO75445 5202 aa5.55□□□□□ -1.52
SHMT2-209ENST00000553949 P0C880 135 aa5.53□□□□□ -1.52
SHMT2-209ENST00000553949 KRTAP19-1Q8IUB9 90 aa5.53□□□□□ -1.52
SHMT2-209ENST00000553949 PCP4P48539 62 aa5.52□□□□□ -1.53
SHMT2-209ENST00000553949 SPRR2GQ9BYE4 73 aa5.52□□□□□ -1.53
SHMT2-209ENST00000553949 SSPOA2VEC9 5147 aa5.44□□□□□ -1.54
SHMT2-209ENST00000553949 R4GN34 69 aa5.44□□□□□ -1.54
SHMT2-209ENST00000553949 SEC61GP60059 68 aa5.42□□□□□ -1.54
SHMT2-209ENST00000553949 KRTAP19-8Q3LI54 63 aa5.42□□□□□ -1.54
SHMT2-209ENST00000553949 M0QZ58 72 aa5.41□□□□□ -1.54
SHMT2-209ENST00000553949 SERP1Q9Y6X1 66 aa5.4□□□□□ -1.54
SHMT2-209ENST00000553949 Q5VV11 94 aa5.39□□□□□ -1.55
SHMT2-209ENST00000553949 MT1BP07438 61 aa5.38□□□□□ -1.55
SHMT2-209ENST00000553949 A0A1B0GU69 56 aa5.35□□□□□ -1.55
SHMT2-209ENST00000553949 LINC01554Q52M75 96 aa5.32□□□□□ -1.56
SHMT2-209ENST00000553949 KRTAP19-6Q3LI70 58 aa5.31□□□□□ -1.56
SHMT2-209ENST00000553949 LINC01558Q9Y6Z2 57 aa5.31□□□□□ -1.56
SHMT2-209ENST00000553949 KRTAP13-4Q3LI77 160 aa5.3□□□□□ -1.56
SHMT2-209ENST00000553949 A0A1B0GU33 70 aa5.29□□□□□ -1.56
SHMT2-209ENST00000553949 PRR15LQ9BU68 103 aa5.29□□□□□ -1.56
SHMT2-209ENST00000553949 PLAC4Q8WY50 150 aa5.25□□□□□ -1.57
SHMT2-209ENST00000553949 FCGBPQ9Y6R7 5405 aaPredicted RBP5.24□□□□□ -1.57
SHMT2-209ENST00000553949 KRTAP9-7A8MTY7 169 aa5.23□□□□□ -1.57
SHMT2-209ENST00000553949 RPS28P62857 69 aaKnown RBP5.23□□□□□ -1.57
SHMT2-209ENST00000553949 SPATA8Q6RVD6 105 aa5.23□□□□□ -1.57
SHMT2-209ENST00000553949 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.22□□□□□ -1.57
SHMT2-209ENST00000553949 SMIM26A0A096LP01 95 aa5.21□□□□□ -1.58
SHMT2-209ENST00000553949 V9GYY9 64 aa5.21□□□□□ -1.58
SHMT2-209ENST00000553949 A6NN06 94 aa5.2□□□□□ -1.58
SHMT2-209ENST00000553949 Q1T7F1 81 aa5.2□□□□□ -1.58
SHMT2-209ENST00000553949 A0A0D9SG42 100 aa5.18□□□□□ -1.58
SHMT2-209ENST00000553949 KRTAP10-5P60370 271 aa5.18□□□□□ -1.58
SHMT2-209ENST00000553949 PSPHP1O15172 72 aa5.13□□□□□ -1.59
SHMT2-209ENST00000553949 MT1XP80297 61 aa5.13□□□□□ -1.59
SHMT2-209ENST00000553949 A8MU10 97 aa5.11□□□□□ -1.59
SHMT2-209ENST00000553949 UQCR11O14957 56 aa5.11□□□□□ -1.59
SHMT2-209ENST00000553949 PRO2289Q9P1D8 64 aa5.11□□□□□ -1.59
SHMT2-209ENST00000553949 KRTAP12-1P59990 96 aa5.08□□□□□ -1.6
SHMT2-209ENST00000553949 SPINT4Q6UDR6 99 aa5.08□□□□□ -1.6
SHMT2-209ENST00000553949 KRTAP12-2P59991 146 aa5.05□□□□□ -1.6
SHMT2-209ENST00000553949 CAMK2N1Q7Z7J9 78 aa5.05□□□□□ -1.6
SHMT2-209ENST00000553949 MACF1Q9UPN3 7388 aaKnown RBP5.04□□□□□ -1.6
SHMT2-209ENST00000553949 MIR22HGQ0VDD5 57 aa5.04□□□□□ -1.6
SHMT2-209ENST00000553949 SYNE2Q8WXH0 6885 aaKnown RBP5.03□□□□□ -1.6
SHMT2-209ENST00000553949 A6NED7 52 aa4.98□□□□□ -1.61
SHMT2-209ENST00000553949 KRTAP10-7P60409 375 aaPredicted RBP4.9□□□□□ -1.63
SHMT2-209ENST00000553949 K7ERS5 55 aa4.87□□□□□ -1.63
SHMT2-209ENST00000553949 KRTAP10-12P60413 245 aa4.87□□□□□ -1.63
SHMT2-209ENST00000553949 KMT2DO14686 5537 aa4.87□□□□□ -1.63
SHMT2-209ENST00000553949 C10orf95Q9H7T3 257 aa4.83□□□□□ -1.64
SHMT2-209ENST00000553949 CDC42SE1Q9NRR8 79 aa4.83□□□□□ -1.64
SHMT2-209ENST00000553949 KRTAP6-3Q3LI67 103 aa4.82□□□□□ -1.64
SHMT2-209ENST00000553949 KRTAP4-8A0A0G2JLE6 195 aa4.8□□□□□ -1.64
SHMT2-209ENST00000553949 KRTAP4-8Q9BYQ9 185 aa4.8□□□□□ -1.64
SHMT2-209ENST00000553949 KRTAP8-1Q8IUC2 63 aa4.77□□□□□ -1.65
SHMT2-209ENST00000553949 NEBP20929 6669 aa4.76□□□□□ -1.65
SHMT2-209ENST00000553949 TNP1P09430 55 aa4.75□□□□□ -1.65
SHMT2-209ENST00000553949 KRTAP5-9P26371 169 aa4.74□□□□□ -1.65
SHMT2-209ENST00000553949 MUC12Q9UKN1 5478 aa4.7□□□□□ -1.66
SHMT2-209ENST00000553949 SPRR2FQ96RM1 72 aa4.69□□□□□ -1.66
SHMT2-209ENST00000553949 BRK1Q8WUW1 75 aa4.66□□□□□ -1.66
SHMT2-209ENST00000553949 KRTAP25-1Q3LHN0 102 aa4.65□□□□□ -1.67
SHMT2-209ENST00000553949 ROMO1P60602 79 aa4.61□□□□□ -1.67
SHMT2-209ENST00000553949 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
SHMT2-209ENST00000553949 MDN1Q9NU22 5596 aa4.61□□□□□ -1.67
SHMT2-209ENST00000553949 KRTAP19-7Q3SYF9 63 aa4.58□□□□□ -1.68
SHMT2-209ENST00000553949 KRTAP20-1Q3LI63 56 aa4.55□□□□□ -1.68
SHMT2-209ENST00000553949 KRTAP19-5Q3LI72 72 aa4.55□□□□□ -1.68
SHMT2-209ENST00000553949 SPRR2EP22531 72 aa4.53□□□□□ -1.68
SHMT2-209ENST00000553949 SPRR2BP35325 72 aa4.53□□□□□ -1.68
SHMT2-209ENST00000553949 SPRR2AP35326 72 aa4.53□□□□□ -1.68
SHMT2-209ENST00000553949 MT1EP04732 61 aa4.52□□□□□ -1.69
SHMT2-209ENST00000553949 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
SHMT2-209ENST00000553949 KRTAP23-1A1A580 65 aa4.49□□□□□ -1.69
SHMT2-209ENST00000553949 KRTAP12-3P60328 96 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms