RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PRO0628Q9UI54 55 aa13.48□□□□□ -0.25
CCDC88C-205ENST00000553403 A6NED7 52 aa13.43□□□□□ -0.26
CCDC88C-205ENST00000553403 SEC61BP60468 96 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-205ENST00000553403 LPAP08519 4548 aa13.35□□□□□ -0.27
CCDC88C-205ENST00000553403 SEC61GP60059 68 aa13.32□□□□□ -0.28
CCDC88C-205ENST00000553403 H1FX-AS1Q4G0G2 97 aa13.28□□□□□ -0.28
CCDC88C-205ENST00000553403 CDC42SE1Q9NRR8 79 aa13.28□□□□□ -0.28
CCDC88C-205ENST00000553403 RBM12B-AS1Q9P1G2 102 aa13.28□□□□□ -0.28
CCDC88C-205ENST00000553403 LCA10Q71F78 164 aa13.27□□□□□ -0.29
CCDC88C-205ENST00000553403 S4R3F8 94 aa13.26□□□□□ -0.29
CCDC88C-205ENST00000553403 SVIPQ8NHG7 77 aa13.25□□□□□ -0.29
CCDC88C-205ENST00000553403 KRTAP3-3Q9BYR6 98 aa13.22□□□□□ -0.29
CCDC88C-205ENST00000553403 A8MU10 97 aa13.2□□□□□ -0.3
CCDC88C-205ENST00000553403 RNF213Q63HN8 5207 aa13.18□□□□□ -0.3
CCDC88C-205ENST00000553403 UQCR11O14957 56 aa13.16□□□□□ -0.3
CCDC88C-205ENST00000553403 SPATA8Q6RVD6 105 aa13.09□□□□□ -0.31
CCDC88C-205ENST00000553403 MUC17Q685J3 4493 aa13.08□□□□□ -0.32
CCDC88C-205ENST00000553403 MIR22HGQ0VDD5 57 aa13.05□□□□□ -0.32
CCDC88C-205ENST00000553403 KRTAP4-1Q9BYQ7 146 aa13.05□□□□□ -0.32
CCDC88C-205ENST00000553403 A0A1B0GU33 70 aa12.98□□□□□ -0.33
CCDC88C-205ENST00000553403 CSAG1Q6PB30 78 aa12.92□□□□□ -0.34
CCDC88C-205ENST00000553403 KRTAP10-6P60371 365 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-205ENST00000553403 KRTAP3-2Q9BYR7 98 aa12.86□□□□□ -0.35
CCDC88C-205ENST00000553403 PMAIP1Q13794 54 aa12.83□□□□□ -0.35
CCDC88C-205ENST00000553403 H0YAA0 97 aa12.83□□□□□ -0.36
CCDC88C-205ENST00000553403 KRTAP19-2Q3LHN2 52 aa12.79□□□□□ -0.36
CCDC88C-205ENST00000553403 MUC2Q02817 5179 aa12.76□□□□□ -0.37
CCDC88C-205ENST00000553403 A6NN06 94 aa12.73□□□□□ -0.37
CCDC88C-205ENST00000553403 ADM2Q7Z4H4 148 aa12.72□□□□□ -0.37
CCDC88C-205ENST00000553403 P0C880 135 aa12.69□□□□□ -0.38
CCDC88C-205ENST00000553403 KRTAP13-4Q3LI77 160 aa12.57□□□□□ -0.4
CCDC88C-205ENST00000553403 FAT4Q6V0I7 4981 aa12.5□□□□□ -0.41
CCDC88C-205ENST00000553403 M0QZ58 72 aa12.44□□□□□ -0.42
CCDC88C-205ENST00000553403 KTN1-AS1Q86SY8 53 aa12.43□□□□□ -0.42
CCDC88C-205ENST00000553403 LCE2AQ5TA79 106 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-205ENST00000553403 K7ERS5 55 aa12.39□□□□□ -0.43
CCDC88C-205ENST00000553403 A0A0D9SG42 100 aa12.35□□□□□ -0.43
CCDC88C-205ENST00000553403 FLGP20930 4061 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-205ENST00000553403 LCE2CQ5TA81 110 aa12.32□□□□□ -0.44
CCDC88C-205ENST00000553403 R4GN34 69 aa12.22□□□□□ -0.45
CCDC88C-205ENST00000553403 KRTAP9-2Q9BYQ4 174 aa12.19□□□□□ -0.46
CCDC88C-205ENST00000553403 LORP23490 312 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-205ENST00000553403 KRTAP12-1P59990 96 aa12.13□□□□□ -0.47
CCDC88C-205ENST00000553403 KRTAP12-2P59991 146 aa12.1□□□□□ -0.47
CCDC88C-205ENST00000553403 MT1HP80294 61 aa12.04□□□□□ -0.48
CCDC88C-205ENST00000553403 SPINT4Q6UDR6 99 aa12.04□□□□□ -0.48
CCDC88C-205ENST00000553403 CRIPTQ9P021 101 aa12.01□□□□□ -0.49
CCDC88C-205ENST00000553403 LINC01554Q52M75 96 aa12□□□□□ -0.49
CCDC88C-205ENST00000553403 PRAC1Q96KF2 57 aa11.98□□□□□ -0.49
CCDC88C-205ENST00000553403 M0R2T5 61 aa11.95□□□□□ -0.5
CCDC88C-205ENST00000553403 ROMO1P60602 79 aa11.95□□□□□ -0.5
CCDC88C-205ENST00000553403 LCE2DQ5TA82 110 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-205ENST00000553403 KRTAP9-6A0A140TA67 174 aa11.79□□□□□ -0.52
CCDC88C-205ENST00000553403 MT2AP02795 61 aa11.67□□□□□ -0.54
CCDC88C-205ENST00000553403 KRTAP9-8Q9BYQ0 159 aa11.66□□□□□ -0.54
CCDC88C-205ENST00000553403 KRTAP25-1Q3LHN0 102 aa11.65□□□□□ -0.55
CCDC88C-205ENST00000553403 SPRR2GQ9BYE4 73 aa11.65□□□□□ -0.55
CCDC88C-205ENST00000553403 MT1FP04733 61 aa11.6□□□□□ -0.55
CCDC88C-205ENST00000553403 KRTAP10-10P60014 251 aa11.59□□□□□ -0.55
CCDC88C-205ENST00000553403 KRTAP19-1Q8IUB9 90 aa11.56□□□□□ -0.56
CCDC88C-205ENST00000553403 CRCT1Q9UGL9 99 aa11.53□□□□□ -0.56
CCDC88C-205ENST00000553403 CAMK2N1Q7Z7J9 78 aa11.49□□□□□ -0.57
CCDC88C-205ENST00000553403 C10orf95Q9H7T3 257 aa11.46□□□□□ -0.58
CCDC88C-205ENST00000553403 FSIP2Q5CZC0 6907 aa11.42□□□□□ -0.58
CCDC88C-205ENST00000553403 PLAC4Q8WY50 150 aa11.35□□□□□ -0.59
CCDC88C-205ENST00000553403 KRTAP19-8Q3LI54 63 aa11.29□□□□□ -0.6
CCDC88C-205ENST00000553403 KRTAP9-3Q9BYQ3 159 aa11.24□□□□□ -0.61
CCDC88C-205ENST00000553403 MT1BP07438 61 aa11.09□□□□□ -0.63
CCDC88C-205ENST00000553403 TNP1P09430 55 aa11.03□□□□□ -0.64
CCDC88C-205ENST00000553403 PP632Q6XCG6 107 aa10.95□□□□□ -0.66
CCDC88C-205ENST00000553403 USH2AO75445 5202 aa10.91□□□□□ -0.66
CCDC88C-205ENST00000553403 KRTAP23-1A1A580 65 aa10.85□□□□□ -0.67
CCDC88C-205ENST00000553403 LCE2BO14633 110 aa10.85□□□□□ -0.67
CCDC88C-205ENST00000553403 MT1XP80297 61 aa10.82□□□□□ -0.68
CCDC88C-205ENST00000553403 SSPOA2VEC9 5147 aa10.81□□□□□ -0.68
CCDC88C-205ENST00000553403 KRTAP10-5P60370 271 aa10.81□□□□□ -0.68
CCDC88C-205ENST00000553403 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.71□□□□□ -0.69
CCDC88C-205ENST00000553403 PRO2289Q9P1D8 64 aa10.66□□□□□ -0.7
CCDC88C-205ENST00000553403 KRTAP9-7A8MTY7 169 aa10.61□□□□□ -0.71
CCDC88C-205ENST00000553403 FCGBPQ9Y6R7 5405 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-205ENST00000553403 KRTAP19-6Q3LI70 58 aa10.5□□□□□ -0.73
CCDC88C-205ENST00000553403 LCE3AQ5TA76 89 aa10.48□□□□□ -0.73
CCDC88C-205ENST00000553403 KRTAP15-1Q3LI76 137 aa10.41□□□□□ -0.74
CCDC88C-205ENST00000553403 KRTAP10-7P60409 375 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-205ENST00000553403 KRTAP10-12P60413 245 aa10.38□□□□□ -0.75
CCDC88C-205ENST00000553403 KRTAP8-1Q8IUC2 63 aa10.31□□□□□ -0.76
CCDC88C-205ENST00000553403 MACF1Q9UPN3 7388 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-205ENST00000553403 SYNE2Q8WXH0 6885 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-205ENST00000553403 KRTAP12-3P60328 96 aa10.05□□□□□ -0.8
CCDC88C-205ENST00000553403 KRTAP6-3Q3LI67 103 aa10.02□□□□□ -0.8
CCDC88C-205ENST00000553403 KRTAP4-8A0A0G2JLE6 195 aa9.87□□□□□ -0.83
CCDC88C-205ENST00000553403 SPRR5A0A1B0GTR4 108 aa9.87□□□□□ -0.83
CCDC88C-205ENST00000553403 KRTAP4-8Q9BYQ9 185 aa9.87□□□□□ -0.83
CCDC88C-205ENST00000553403 KRTAP19-5Q3LI72 72 aa9.86□□□□□ -0.83
CCDC88C-205ENST00000553403 NDUFAF8A1L188 74 aa9.74□□□□□ -0.85
CCDC88C-205ENST00000553403 LUZP6Q538Z0 58 aa9.7□□□□□ -0.86
CCDC88C-205ENST00000553403 KRTAP19-7Q3SYF9 63 aa9.64□□□□□ -0.87
CCDC88C-205ENST00000553403 KMT2DO14686 5537 aa9.61□□□□□ -0.87
CCDC88C-205ENST00000553403 MUC12Q9UKN1 5478 aa9.52□□□□□ -0.89
CCDC88C-205ENST00000553403 KRTAP5-9P26371 169 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms