RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 KRTAP3-1Q9BYR8 98 aa2.65□□□□□ -1.98
LIMA1-214ENST00000552783 KRTAP4-7Q9BYR0 210 aa2.64□□□□□ -1.99
LIMA1-214ENST00000552783 SACSQ9NZJ4 4579 aa2.64□□□□□ -1.99
LIMA1-214ENST00000552783 KRTAP4-8A0A0G2JLE6 195 aa2.63□□□□□ -1.99
LIMA1-214ENST00000552783 KRTAP25-1Q3LHN0 102 aa2.63□□□□□ -1.99
LIMA1-214ENST00000552783 KMT2CQ8NEZ4 4911 aaKnown RBP2.62□□□□□ -1.99
LIMA1-214ENST00000552783 ROMO1P60602 79 aa2.61□□□□□ -1.99
LIMA1-214ENST00000552783 KRTAP4-12Q9BQ66 201 aa2.61□□□□□ -1.99
LIMA1-214ENST00000552783 MYCBP2O75592 4640 aa2.61□□□□□ -1.99
LIMA1-214ENST00000552783 HSPG2P98160 4391 aa2.61□□□□□ -1.99
LIMA1-214ENST00000552783 A0A1B0GU33 70 aa2.61□□□□□ -1.99
LIMA1-214ENST00000552783 RYR3Q15413 4870 aa2.6□□□□□ -1.99
LIMA1-214ENST00000552783 RYR2Q92736 4967 aa2.6□□□□□ -1.99
LIMA1-214ENST00000552783 P0C880 135 aa2.6□□□□□ -1.99
LIMA1-214ENST00000552783 PKHD1L1Q86WI1 4243 aa2.6□□□□□ -1.99
LIMA1-214ENST00000552783 KRTAP9-2Q9BYQ4 174 aa2.6□□□□□ -1.99
LIMA1-214ENST00000552783 HMCN1Q96RW7 5635 aa2.6□□□□□ -1.99
LIMA1-214ENST00000552783 DYNC1H1Q14204 4646 aaKnown RBP2.6□□□□□ -1.99
LIMA1-214ENST00000552783 H1FX-AS1Q4G0G2 97 aa2.59□□□□□ -1.99
LIMA1-214ENST00000552783 APOBP04114 4563 aaKnown RBP2.58□□□□□ -2
LIMA1-214ENST00000552783 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.58□□□□□ -2
LIMA1-214ENST00000552783 COX6B2Q6YFQ2 88 aa2.57□□□□□ -2
LIMA1-214ENST00000552783 KRTAP9-6A0A140TA67 174 aa2.57□□□□□ -2
LIMA1-214ENST00000552783 K7ERS5 55 aa2.57□□□□□ -2
LIMA1-214ENST00000552783 LRP1Q07954 4544 aaKnown RBP2.57□□□□□ -2
LIMA1-214ENST00000552783 A0A0D9SG42 100 aa2.56□□□□□ -2
LIMA1-214ENST00000552783 KRTAP13-4Q3LI77 160 aa2.56□□□□□ -2
LIMA1-214ENST00000552783 LPAP08519 4548 aa2.55□□□□□ -2
LIMA1-214ENST00000552783 TPRXLQ17RH7 258 aa2.54□□□□□ -2
LIMA1-214ENST00000552783 C10orf95Q9H7T3 257 aa2.54□□□□□ -2
LIMA1-214ENST00000552783 Q5VSD8 79 aa2.54□□□□□ -2
LIMA1-214ENST00000552783 KRTAP19-1Q8IUB9 90 aa2.54□□□□□ -2
LIMA1-214ENST00000552783 C20orf166-AS1Q96NR2 134 aa2.54□□□□□ -2
LIMA1-214ENST00000552783 KRTAP10-6P60371 365 aaPredicted RBP2.53□□□□□ -2
LIMA1-214ENST00000552783 FAT3Q8TDW7 4589 aa2.52□□□□□ -2.01
LIMA1-214ENST00000552783 TNXBP22105 4242 aa2.5□□□□□ -2.01
LIMA1-214ENST00000552783 EPPK1P58107 5090 aaKnown RBP2.5□□□□□ -2.01
LIMA1-214ENST00000552783 RPS29P62273 56 aaKnown RBP2.5□□□□□ -2.01
LIMA1-214ENST00000552783 BIRC6Q9NR09 4857 aa2.5□□□□□ -2.01
LIMA1-214ENST00000552783 KRTAP10-8P60410 259 aa2.49□□□□□ -2.01
LIMA1-214ENST00000552783 LCE3BQ5TA77 95 aa2.49□□□□□ -2.01
LIMA1-214ENST00000552783 RPL37P61927 97 aaKnown RBP2.48□□□□□ -2.01
LIMA1-214ENST00000552783 SPINT4Q6UDR6 99 aa2.48□□□□□ -2.01
LIMA1-214ENST00000552783 KRTAP9-9Q9BYP9 154 aa2.48□□□□□ -2.01
LIMA1-214ENST00000552783 KRTAP9-4Q9BYQ2 154 aa2.48□□□□□ -2.01
LIMA1-214ENST00000552783 A0A1B0GVY2 172 aa2.47□□□□□ -2.01
LIMA1-214ENST00000552783 KRTAP12-2P59991 146 aa2.47□□□□□ -2.01
LIMA1-214ENST00000552783 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
LIMA1-214ENST00000552783 S4R3F8 94 aa2.47□□□□□ -2.01
LIMA1-214ENST00000552783 KRTAP10-4P60372 401 aaPredicted RBP2.47□□□□□ -2.01
LIMA1-214ENST00000552783 NDUFAF8A1L188 74 aa2.46□□□□□ -2.02
LIMA1-214ENST00000552783 KRTAP19-4Q3LI73 84 aa2.46□□□□□ -2.02
LIMA1-214ENST00000552783 LRP2P98164 4655 aa2.46□□□□□ -2.02
LIMA1-214ENST00000552783 KRTAP15-1Q3LI76 137 aa2.46□□□□□ -2.02
LIMA1-214ENST00000552783 RYR1P21817 5038 aa2.43□□□□□ -2.02
LIMA1-214ENST00000552783 HERC2O95714 4834 aa2.43□□□□□ -2.02
LIMA1-214ENST00000552783 KRTAP12-1P59990 96 aa2.42□□□□□ -2.02
LIMA1-214ENST00000552783 KIAA1109Q2LD37 5005 aa2.41□□□□□ -2.02
LIMA1-214ENST00000552783 ABCA13Q86UQ4 5058 aa2.39□□□□□ -2.03
LIMA1-214ENST00000552783 LCE1DQ5T752 114 aa2.39□□□□□ -2.03
LIMA1-214ENST00000552783 SEC61BP60468 96 aaKnown RBP2.37□□□□□ -2.03
LIMA1-214ENST00000552783 R4GN34 69 aa2.37□□□□□ -2.03
LIMA1-214ENST00000552783 M0QZ58 72 aa2.37□□□□□ -2.03
LIMA1-214ENST00000552783 KRTAP4-9Q9BYQ8 210 aa2.35□□□□□ -2.03
LIMA1-214ENST00000552783 MT1HL1P0DM35 61 aa2.33□□□□□ -2.04
LIMA1-214ENST00000552783 PCLOQ9Y6V0 5065 aa2.33□□□□□ -2.04
LIMA1-214ENST00000552783 MUC2Q02817 5179 aa2.32□□□□□ -2.04
LIMA1-214ENST00000552783 CAMK2N1Q7Z7J9 78 aa2.31□□□□□ -2.04
LIMA1-214ENST00000552783 LUZP6Q538Z0 58 aa2.29□□□□□ -2.04
LIMA1-214ENST00000552783 MUC17Q685J3 4493 aa2.28□□□□□ -2.04
LIMA1-214ENST00000552783 KRTAP9-7A8MTY7 169 aa2.27□□□□□ -2.05
LIMA1-214ENST00000552783 PLAC4Q8WY50 150 aa2.27□□□□□ -2.05
LIMA1-214ENST00000552783 M0R2T5 61 aa2.25□□□□□ -2.05
LIMA1-214ENST00000552783 LCE4AQ5TA78 99 aa2.24□□□□□ -2.05
LIMA1-214ENST00000552783 LCE5AQ5TCM9 118 aa2.24□□□□□ -2.05
LIMA1-214ENST00000552783 KRTAP4-11Q9BYQ6 195 aa2.24□□□□□ -2.05
LIMA1-214ENST00000552783 KRTAP9-3Q9BYQ3 159 aa2.24□□□□□ -2.05
LIMA1-214ENST00000552783 HERC1Q15751 4861 aa2.23□□□□□ -2.05
LIMA1-214ENST00000552783 KRTAP23-1A1A580 65 aa2.22□□□□□ -2.05
LIMA1-214ENST00000552783 KRTAP4-1Q9BYQ7 146 aa2.21□□□□□ -2.06
LIMA1-214ENST00000552783 FAT4Q6V0I7 4981 aa2.19□□□□□ -2.06
LIMA1-214ENST00000552783 HMCN2Q8NDA2 5059 aa2.19□□□□□ -2.06
LIMA1-214ENST00000552783 FLGP20930 4061 aaPredicted RBP2.15□□□□□ -2.06
LIMA1-214ENST00000552783 KRTAP19-2Q3LHN2 52 aa2.15□□□□□ -2.06
LIMA1-214ENST00000552783 KRTAP5-9P26371 169 aa2.13□□□□□ -2.07
LIMA1-214ENST00000552783 TNP1P09430 55 aa2.12□□□□□ -2.07
LIMA1-214ENST00000552783 RNF213Q63HN8 5207 aa2.11□□□□□ -2.07
LIMA1-214ENST00000552783 PP632Q6XCG6 107 aa2.11□□□□□ -2.07
LIMA1-214ENST00000552783 KRTAP10-10P60014 251 aa2.1□□□□□ -2.07
LIMA1-214ENST00000552783 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.09□□□□□ -2.07
LIMA1-214ENST00000552783 SPRR5A0A1B0GTR4 108 aa2.08□□□□□ -2.08
LIMA1-214ENST00000552783 UBR4Q5T4S7 5183 aa2.08□□□□□ -2.08
LIMA1-214ENST00000552783 LCE3AQ5TA76 89 aa2.01□□□□□ -2.09
LIMA1-214ENST00000552783 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
LIMA1-214ENST00000552783 MT1HP80294 61 aa1.96□□□□□ -2.1
LIMA1-214ENST00000552783 SPRR2GQ9BYE4 73 aa1.96□□□□□ -2.1
LIMA1-214ENST00000552783 KMT2DO14686 5537 aa1.95□□□□□ -2.1
LIMA1-214ENST00000552783 MT1FP04733 61 aa1.95□□□□□ -2.1
LIMA1-214ENST00000552783 MT2AP02795 61 aa1.94□□□□□ -2.1
LIMA1-214ENST00000552783 USH2AO75445 5202 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms