RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 SNURFQ9Y675 71 aa10.26□□□□□ -0.77
NEK3-202ENST00000550841 COX7CP15954 63 aa10.23□□□□□ -0.77
NEK3-202ENST00000550841 DMAC1Q96GE9 116 aa10.2□□□□□ -0.78
NEK3-202ENST00000550841 MT2AP02795 61 aa10.19□□□□□ -0.78
NEK3-202ENST00000550841 NDUFC1O43677 76 aa10.18□□□□□ -0.78
NEK3-202ENST00000550841 KRTAP10-10P60014 251 aa10.15□□□□□ -0.78
NEK3-202ENST00000550841 KRTAP3-3Q9BYR6 98 aa10.15□□□□□ -0.78
NEK3-202ENST00000550841 ANAPC13Q9BS18 74 aa10.14□□□□□ -0.79
NEK3-202ENST00000550841 ACYP2P14621 99 aa10.12□□□□□ -0.79
NEK3-202ENST00000550841 SPANXA2-OT1Q8N9U9 137 aa10.11□□□□□ -0.79
NEK3-202ENST00000550841 MT1FP04733 61 aa10.1□□□□□ -0.79
NEK3-202ENST00000550841 KRTAP9-1A8MXZ3 250 aaPredicted RBP10□□□□□ -0.81
NEK3-202ENST00000550841 KRTAP9-7A8MTY7 169 aa9.99□□□□□ -0.81
NEK3-202ENST00000550841 KRTAP9-3Q9BYQ3 159 aa9.96□□□□□ -0.82
NEK3-202ENST00000550841 SPTSSBQ8NFR3 76 aa9.94□□□□□ -0.82
NEK3-202ENST00000550841 H0YAA0 97 aa9.93□□□□□ -0.82
NEK3-202ENST00000550841 CHKB-CPT1BH3BT56 60 aa9.93□□□□□ -0.82
NEK3-202ENST00000550841 H7BZZ5 65 aa9.92□□□□□ -0.82
NEK3-202ENST00000550841 USH2AO75445 5202 aa9.9□□□□□ -0.82
NEK3-202ENST00000550841 CCDC179H3BU77 68 aa9.87□□□□□ -0.83
NEK3-202ENST00000550841 CYSTM1Q9H1C7 97 aa9.87□□□□□ -0.83
NEK3-202ENST00000550841 SSPOA2VEC9 5147 aa9.85□□□□□ -0.83
NEK3-202ENST00000550841 ADM2Q7Z4H4 148 aa9.81□□□□□ -0.84
NEK3-202ENST00000550841 CRIPTQ9P021 101 aa9.79□□□□□ -0.84
NEK3-202ENST00000550841 LCE2BO14633 110 aa9.77□□□□□ -0.85
NEK3-202ENST00000550841 COA5Q86WW8 74 aa9.76□□□□□ -0.85
NEK3-202ENST00000550841 KRTAP19-1Q8IUB9 90 aa9.76□□□□□ -0.85
NEK3-202ENST00000550841 FCGBPQ9Y6R7 5405 aaPredicted RBP9.72□□□□□ -0.85
NEK3-202ENST00000550841 ATP5EP56381 51 aaPredicted RBP9.68□□□□□ -0.86
NEK3-202ENST00000550841 SPRR2GQ9BYE4 73 aa9.68□□□□□ -0.86
NEK3-202ENST00000550841 P0C880 135 aa9.61□□□□□ -0.87
NEK3-202ENST00000550841 KRTAP3-2Q9BYR7 98 aa9.61□□□□□ -0.87
NEK3-202ENST00000550841 TMEM258P61165 79 aa9.59□□□□□ -0.87
NEK3-202ENST00000550841 R4GN34 69 aa9.55□□□□□ -0.88
NEK3-202ENST00000550841 KRTAP19-8Q3LI54 63 aa9.53□□□□□ -0.88
NEK3-202ENST00000550841 Q5VV11 94 aa9.52□□□□□ -0.89
NEK3-202ENST00000550841 SEC61GP60059 68 aa9.5□□□□□ -0.89
NEK3-202ENST00000550841 KRTAP19-6Q3LI70 58 aa9.49□□□□□ -0.89
NEK3-202ENST00000550841 M0QZ58 72 aa9.47□□□□□ -0.89
NEK3-202ENST00000550841 SERP1Q9Y6X1 66 aa9.46□□□□□ -0.9
NEK3-202ENST00000550841 MT1BP07438 61 aa9.41□□□□□ -0.9
NEK3-202ENST00000550841 MACF1Q9UPN3 7388 aaKnown RBP9.41□□□□□ -0.9
NEK3-202ENST00000550841 SYNE2Q8WXH0 6885 aaKnown RBP9.34□□□□□ -0.91
NEK3-202ENST00000550841 PCP4P48539 62 aa9.34□□□□□ -0.91
NEK3-202ENST00000550841 LINC01554Q52M75 96 aa9.3□□□□□ -0.92
NEK3-202ENST00000550841 A0A1B0GU69 56 aa9.29□□□□□ -0.92
NEK3-202ENST00000550841 PLAC4Q8WY50 150 aa9.29□□□□□ -0.92
NEK3-202ENST00000550841 KRTAP6-3Q3LI67 103 aa9.26□□□□□ -0.93
NEK3-202ENST00000550841 A0A1B0GU33 70 aa9.23□□□□□ -0.93
NEK3-202ENST00000550841 PRR15LQ9BU68 103 aa9.21□□□□□ -0.94
NEK3-202ENST00000550841 LINC01558Q9Y6Z2 57 aa9.19□□□□□ -0.94
NEK3-202ENST00000550841 A6NN06 94 aa9.18□□□□□ -0.94
NEK3-202ENST00000550841 KRTAP13-4Q3LI77 160 aa9.15□□□□□ -0.94
NEK3-202ENST00000550841 KRTAP10-5P60370 271 aa9.13□□□□□ -0.95
NEK3-202ENST00000550841 PRO2289Q9P1D8 64 aa9.08□□□□□ -0.96
NEK3-202ENST00000550841 SPATA8Q6RVD6 105 aa9.06□□□□□ -0.96
NEK3-202ENST00000550841 V9GYY9 64 aa9.04□□□□□ -0.96
NEK3-202ENST00000550841 SMIM26A0A096LP01 95 aa9□□□□□ -0.97
NEK3-202ENST00000550841 A0A0D9SG42 100 aa8.99□□□□□ -0.97
NEK3-202ENST00000550841 RPS28P62857 69 aaKnown RBP8.99□□□□□ -0.97
NEK3-202ENST00000550841 MT1XP80297 61 aa8.95□□□□□ -0.98
NEK3-202ENST00000550841 Q1T7F1 81 aa8.94□□□□□ -0.98
NEK3-202ENST00000550841 UQCR11O14957 56 aa8.89□□□□□ -0.99
NEK3-202ENST00000550841 CAMK2N1Q7Z7J9 78 aa8.87□□□□□ -0.99
NEK3-202ENST00000550841 SPINT4Q6UDR6 99 aa8.86□□□□□ -0.99
NEK3-202ENST00000550841 A8MU10 97 aa8.81□□□□□ -1
NEK3-202ENST00000550841 KRTAP12-1P59990 96 aa8.81□□□□□ -1
NEK3-202ENST00000550841 NEBP20929 6669 aa8.81□□□□□ -1
NEK3-202ENST00000550841 PSPHP1O15172 72 aa8.8□□□□□ -1
NEK3-202ENST00000550841 MUC12Q9UKN1 5478 aa8.78□□□□□ -1
NEK3-202ENST00000550841 KRTAP12-2P59991 146 aa8.74□□□□□ -1.01
NEK3-202ENST00000550841 KRTAP20-1Q3LI63 56 aa8.74□□□□□ -1.01
NEK3-202ENST00000550841 MIR22HGQ0VDD5 57 aa8.72□□□□□ -1.01
NEK3-202ENST00000550841 KRTAP5-9P26371 169 aa8.66□□□□□ -1.02
NEK3-202ENST00000550841 A6NED7 52 aa8.58□□□□□ -1.04
NEK3-202ENST00000550841 KRTAP10-7P60409 375 aaPredicted RBP8.55□□□□□ -1.04
NEK3-202ENST00000550841 KRTAP10-12P60413 245 aa8.54□□□□□ -1.04
NEK3-202ENST00000550841 K7ERS5 55 aa8.53□□□□□ -1.04
NEK3-202ENST00000550841 KMT2DO14686 5537 aa8.51□□□□□ -1.05
NEK3-202ENST00000550841 MDN1Q9NU22 5596 aa8.48□□□□□ -1.05
NEK3-202ENST00000550841 KRTAP2-3P0C7H8 128 aa8.44□□□□□ -1.06
NEK3-202ENST00000550841 KRTAP2-4Q9BYR9 128 aa8.44□□□□□ -1.06
NEK3-202ENST00000550841 KRTAP8-1Q8IUC2 63 aa8.43□□□□□ -1.06
NEK3-202ENST00000550841 KRTAP4-8A0A0G2JLE6 195 aa8.38□□□□□ -1.07
NEK3-202ENST00000550841 SPRR2FQ96RM1 72 aa8.38□□□□□ -1.07
NEK3-202ENST00000550841 KRTAP4-8Q9BYQ9 185 aa8.38□□□□□ -1.07
NEK3-202ENST00000550841 C10orf95Q9H7T3 257 aa8.37□□□□□ -1.07
NEK3-202ENST00000550841 TNP1P09430 55 aa8.33□□□□□ -1.08
NEK3-202ENST00000550841 SPRR2EP22531 72 aa8.33□□□□□ -1.08
NEK3-202ENST00000550841 SPRR2BP35325 72 aa8.33□□□□□ -1.08
NEK3-202ENST00000550841 SPRR2AP35326 72 aa8.33□□□□□ -1.08
NEK3-202ENST00000550841 CDC42SE1Q9NRR8 79 aa8.3□□□□□ -1.08
NEK3-202ENST00000550841 KRTAP2-2Q9BYT5 123 aa8.16□□□□□ -1.1
NEK3-202ENST00000550841 KRTAP2-1Q9BYU5 128 aa8.16□□□□□ -1.1
NEK3-202ENST00000550841 LCE1AQ5T7P2 110 aa8.15□□□□□ -1.1
NEK3-202ENST00000550841 KRTAP25-1Q3LHN0 102 aa8.12□□□□□ -1.11
NEK3-202ENST00000550841 SPRR2DP22532 72 aa8.07□□□□□ -1.12
NEK3-202ENST00000550841 LCE3AQ5TA76 89 aa8.02□□□□□ -1.13
NEK3-202ENST00000550841 KRTAP19-7Q3SYF9 63 aa7.99□□□□□ -1.13
NEK3-202ENST00000550841 ROMO1P60602 79 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 1576.5 ms