RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 LPAP08519 4548 aa7.31□□□□□ -1.24
MSH2-206ENST00000543555 RPL37P61927 97 aaKnown RBP7.31□□□□□ -1.24
MSH2-206ENST00000543555 A6NN06 94 aa7.3□□□□□ -1.24
MSH2-206ENST00000543555 UQCR11O14957 56 aa7.3□□□□□ -1.24
MSH2-206ENST00000543555 COX6B2Q6YFQ2 88 aa7.3□□□□□ -1.24
MSH2-206ENST00000543555 SPATA8Q6RVD6 105 aa7.3□□□□□ -1.24
MSH2-206ENST00000543555 XP32Q5T750 250 aa7.29□□□□□ -1.24
MSH2-206ENST00000543555 SEC61GP60059 68 aa7.27□□□□□ -1.24
MSH2-206ENST00000543555 MIR22HGQ0VDD5 57 aa7.27□□□□□ -1.25
MSH2-206ENST00000543555 KTN1-AS1Q86SY8 53 aa7.21□□□□□ -1.25
MSH2-206ENST00000543555 LRP2P98164 4655 aa7.21□□□□□ -1.26
MSH2-206ENST00000543555 A0A1B0GU33 70 aa7.11□□□□□ -1.27
MSH2-206ENST00000543555 TPRXLQ17RH7 258 aa7.1□□□□□ -1.27
MSH2-206ENST00000543555 H0YAA0 97 aa7.09□□□□□ -1.27
MSH2-206ENST00000543555 H1FX-AS1Q4G0G2 97 aa7.09□□□□□ -1.27
MSH2-206ENST00000543555 KRTAP3-3Q9BYR6 98 aa7.09□□□□□ -1.28
MSH2-206ENST00000543555 MUC2Q02817 5179 aa7.07□□□□□ -1.28
MSH2-206ENST00000543555 S4R3F8 94 aa7.05□□□□□ -1.28
MSH2-206ENST00000543555 HMCN2Q8NDA2 5059 aa7.04□□□□□ -1.28
MSH2-206ENST00000543555 UBR4Q5T4S7 5183 aa6.99□□□□□ -1.29
MSH2-206ENST00000543555 KRTAP10-6P60371 365 aaPredicted RBP6.97□□□□□ -1.29
MSH2-206ENST00000543555 RNF213Q63HN8 5207 aa6.97□□□□□ -1.29
MSH2-206ENST00000543555 RBM12B-AS1Q9P1G2 102 aa6.95□□□□□ -1.3
MSH2-206ENST00000543555 ADM2Q7Z4H4 148 aa6.95□□□□□ -1.3
MSH2-206ENST00000543555 KRTAP3-2Q9BYR7 98 aa6.94□□□□□ -1.3
MSH2-206ENST00000543555 PRAC1Q96KF2 57 aa6.93□□□□□ -1.3
MSH2-206ENST00000543555 KRTAP13-4Q3LI77 160 aa6.86□□□□□ -1.31
MSH2-206ENST00000543555 P0C880 135 aa6.85□□□□□ -1.31
MSH2-206ENST00000543555 SEC61BP60468 96 aaKnown RBP6.83□□□□□ -1.32
MSH2-206ENST00000543555 K7ERS5 55 aa6.83□□□□□ -1.32
MSH2-206ENST00000543555 CSAG1Q6PB30 78 aa6.82□□□□□ -1.32
MSH2-206ENST00000543555 KRTAP4-1Q9BYQ7 146 aa6.78□□□□□ -1.32
MSH2-206ENST00000543555 A0A0D9SG42 100 aa6.77□□□□□ -1.33
MSH2-206ENST00000543555 MUC17Q685J3 4493 aa6.73□□□□□ -1.33
MSH2-206ENST00000543555 FAT4Q6V0I7 4981 aa6.73□□□□□ -1.33
MSH2-206ENST00000543555 M0QZ58 72 aa6.65□□□□□ -1.34
MSH2-206ENST00000543555 ROMO1P60602 79 aa6.64□□□□□ -1.35
MSH2-206ENST00000543555 LINC01554Q52M75 96 aa6.64□□□□□ -1.35
MSH2-206ENST00000543555 KRTAP12-2P59991 146 aa6.62□□□□□ -1.35
MSH2-206ENST00000543555 KRTAP25-1Q3LHN0 102 aa6.62□□□□□ -1.35
MSH2-206ENST00000543555 KRTAP12-1P59990 96 aa6.6□□□□□ -1.35
MSH2-206ENST00000543555 KRTAP19-2Q3LHN2 52 aa6.6□□□□□ -1.35
MSH2-206ENST00000543555 SPINT4Q6UDR6 99 aa6.57□□□□□ -1.36
MSH2-206ENST00000543555 CRIPTQ9P021 101 aa6.55□□□□□ -1.36
MSH2-206ENST00000543555 R4GN34 69 aa6.52□□□□□ -1.37
MSH2-206ENST00000543555 LORP23490 312 aaPredicted RBP6.47□□□□□ -1.37
MSH2-206ENST00000543555 LCE2CQ5TA81 110 aa6.37□□□□□ -1.39
MSH2-206ENST00000543555 C10orf95Q9H7T3 257 aa6.37□□□□□ -1.39
MSH2-206ENST00000543555 FLGP20930 4061 aaPredicted RBP6.37□□□□□ -1.39
MSH2-206ENST00000543555 M0R2T5 61 aa6.31□□□□□ -1.4
MSH2-206ENST00000543555 MT1HP80294 61 aa6.26□□□□□ -1.41
MSH2-206ENST00000543555 CAMK2N1Q7Z7J9 78 aa6.17□□□□□ -1.42
MSH2-206ENST00000543555 LCE2AQ5TA79 106 aaPredicted RBP6.05□□□□□ -1.44
MSH2-206ENST00000543555 SPRR2GQ9BYE4 73 aa6.05□□□□□ -1.44
MSH2-206ENST00000543555 FSIP2Q5CZC0 6907 aa6.02□□□□□ -1.45
MSH2-206ENST00000543555 KRTAP19-1Q8IUB9 90 aa6.02□□□□□ -1.45
MSH2-206ENST00000543555 KRTAP9-8Q9BYQ0 159 aa6□□□□□ -1.45
MSH2-206ENST00000543555 KRTAP10-10P60014 251 aa5.99□□□□□ -1.45
MSH2-206ENST00000543555 MT1FP04733 61 aa5.99□□□□□ -1.45
MSH2-206ENST00000543555 KRTAP15-1Q3LI76 137 aa5.99□□□□□ -1.45
MSH2-206ENST00000543555 MT2AP02795 61 aa5.98□□□□□ -1.45
MSH2-206ENST00000543555 PP632Q6XCG6 107 aa5.96□□□□□ -1.45
MSH2-206ENST00000543555 USH2AO75445 5202 aa5.95□□□□□ -1.46
MSH2-206ENST00000543555 PLAC4Q8WY50 150 aa5.94□□□□□ -1.46
MSH2-206ENST00000543555 TNP1P09430 55 aa5.92□□□□□ -1.46
MSH2-206ENST00000543555 KRTAP23-1A1A580 65 aa5.83□□□□□ -1.48
MSH2-206ENST00000543555 KRTAP19-8Q3LI54 63 aa5.82□□□□□ -1.48
MSH2-206ENST00000543555 KRTAP9-3Q9BYQ3 159 aa5.77□□□□□ -1.49
MSH2-206ENST00000543555 H3BS24 57 aa5.75□□□□□ -1.49
MSH2-206ENST00000543555 NDUFAF8A1L188 74 aa5.74□□□□□ -1.49
MSH2-206ENST00000543555 MT1BP07438 61 aa5.74□□□□□ -1.49
MSH2-206ENST00000543555 LCE2BO14633 110 aa5.72□□□□□ -1.49
MSH2-206ENST00000543555 KRTAP10-5P60370 271 aa5.65□□□□□ -1.5
MSH2-206ENST00000543555 MT1XP80297 61 aa5.65□□□□□ -1.51
MSH2-206ENST00000543555 LCE3AQ5TA76 89 aa5.63□□□□□ -1.51
MSH2-206ENST00000543555 SSPOA2VEC9 5147 aa5.61□□□□□ -1.51
MSH2-206ENST00000543555 KRTAP8-1Q8IUC2 63 aa5.51□□□□□ -1.53
MSH2-206ENST00000543555 LUZP6Q538Z0 58 aa5.5□□□□□ -1.53
MSH2-206ENST00000543555 KRTAP9-2Q9BYQ4 174 aa5.5□□□□□ -1.53
MSH2-206ENST00000543555 SPRR5A0A1B0GTR4 108 aa5.49□□□□□ -1.53
MSH2-206ENST00000543555 KRTAP10-12P60413 245 aa5.48□□□□□ -1.53
MSH2-206ENST00000543555 PRO2289Q9P1D8 64 aa5.48□□□□□ -1.53
MSH2-206ENST00000543555 KRTAP10-7P60409 375 aaPredicted RBP5.46□□□□□ -1.53
MSH2-206ENST00000543555 KMT2DO14686 5537 aa5.45□□□□□ -1.54
MSH2-206ENST00000543555 LCE2DQ5TA82 110 aaPredicted RBP5.42□□□□□ -1.54
MSH2-206ENST00000543555 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
MSH2-206ENST00000543555 FCGBPQ9Y6R7 5405 aaPredicted RBP5.37□□□□□ -1.55
MSH2-206ENST00000543555 CRCT1Q9UGL9 99 aa5.25□□□□□ -1.57
MSH2-206ENST00000543555 MACF1Q9UPN3 7388 aaKnown RBP5.24□□□□□ -1.57
MSH2-206ENST00000543555 KRTAP19-6Q3LI70 58 aa5.23□□□□□ -1.57
MSH2-206ENST00000543555 SYNE2Q8WXH0 6885 aaKnown RBP5.21□□□□□ -1.58
MSH2-206ENST00000543555 KRTAP19-5Q3LI72 72 aa5.21□□□□□ -1.58
MSH2-206ENST00000543555 KRTAP4-8A0A0G2JLE6 195 aa5.17□□□□□ -1.58
MSH2-206ENST00000543555 KRTAP4-8Q9BYQ9 185 aa5.17□□□□□ -1.58
MSH2-206ENST00000543555 A0A0A0MQY5 61 aa5.08□□□□□ -1.6
MSH2-206ENST00000543555 KRTAP9-6A0A140TA67 174 aa5.07□□□□□ -1.6
MSH2-206ENST00000543555 LCE3CQ5T5A8 94 aa5.05□□□□□ -1.6
MSH2-206ENST00000543555 KRTAP19-7Q3SYF9 63 aa5.04□□□□□ -1.6
MSH2-206ENST00000543555 MUC12Q9UKN1 5478 aa5.02□□□□□ -1.61
MSH2-206ENST00000543555 MT1EP04732 61 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms