RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 FAM236CP0DP71 79 aa5.87□□□□□ -1.47
YBX3-213ENST00000542641 MP68P56378 58 aa5.87□□□□□ -1.47
YBX3-213ENST00000542641 C5orf47Q569G3 176 aa5.87□□□□□ -1.47
YBX3-213ENST00000542641 LOC101927531A0A1B0GV80 90 aa5.86□□□□□ -1.47
YBX3-213ENST00000542641 SMIM20Q8N5G0 67 aa5.86□□□□□ -1.47
YBX3-213ENST00000542641 CYP4F30PQ9H0H9 118 aa5.86□□□□□ -1.47
YBX3-213ENST00000542641 C1orf64Q8NEQ6 169 aa5.85□□□□□ -1.47
YBX3-213ENST00000542641 LINC00208Q96KT6 92 aa5.85□□□□□ -1.47
YBX3-213ENST00000542641 TRAV7A0A075B6U4 112 aa5.84□□□□□ -1.47
YBX3-213ENST00000542641 C4orf26Q17RF5 130 aa5.82□□□□□ -1.48
YBX3-213ENST00000542641 H3BPC8 53 aa5.8□□□□□ -1.48
YBX3-213ENST00000542641 MT1HP80294 61 aa5.79□□□□□ -1.48
YBX3-213ENST00000542641 KRTAP15-1Q3LI76 137 aa5.78□□□□□ -1.48
YBX3-213ENST00000542641 FLGP20930 4061 aaPredicted RBP5.78□□□□□ -1.48
YBX3-213ENST00000542641 SERP2Q8N6R1 65 aa5.77□□□□□ -1.49
YBX3-213ENST00000542641 M0R2T5 61 aa5.75□□□□□ -1.49
YBX3-213ENST00000542641 KLKP1Q107X0 134 aa5.75□□□□□ -1.49
YBX3-213ENST00000542641 H1FX-AS1Q4G0G2 97 aa5.74□□□□□ -1.49
YBX3-213ENST00000542641 C20orf197Q8N268 126 aa5.7□□□□□ -1.5
YBX3-213ENST00000542641 SNURFQ9Y675 71 aa5.7□□□□□ -1.5
YBX3-213ENST00000542641 COX7CP15954 63 aa5.68□□□□□ -1.5
YBX3-213ENST00000542641 ANAPC13Q9BS18 74 aa5.67□□□□□ -1.5
YBX3-213ENST00000542641 A8MUN3 132 aa5.64□□□□□ -1.51
YBX3-213ENST00000542641 KRTAP10-6P60371 365 aaPredicted RBP5.63□□□□□ -1.51
YBX3-213ENST00000542641 S4R3F8 94 aa5.63□□□□□ -1.51
YBX3-213ENST00000542641 PCP4P48539 62 aa5.61□□□□□ -1.51
YBX3-213ENST00000542641 LCA10Q71F78 164 aa5.59□□□□□ -1.51
YBX3-213ENST00000542641 DMAC1Q96GE9 116 aa5.59□□□□□ -1.51
YBX3-213ENST00000542641 NDUFC1O43677 76 aa5.56□□□□□ -1.52
YBX3-213ENST00000542641 CSAG1Q6PB30 78 aa5.55□□□□□ -1.52
YBX3-213ENST00000542641 SPANXA2-OT1Q8N9U9 137 aa5.55□□□□□ -1.52
YBX3-213ENST00000542641 CCDC179H3BU77 68 aa5.54□□□□□ -1.52
YBX3-213ENST00000542641 ACYP2P14621 99 aa5.54□□□□□ -1.52
YBX3-213ENST00000542641 KRTAP9-8Q9BYQ0 159 aa5.53□□□□□ -1.52
YBX3-213ENST00000542641 CYSTM1Q9H1C7 97 aa5.53□□□□□ -1.52
YBX3-213ENST00000542641 H7BZZ5 65 aa5.51□□□□□ -1.53
YBX3-213ENST00000542641 MT2AP02795 61 aa5.48□□□□□ -1.53
YBX3-213ENST00000542641 KRTAP10-10P60014 251 aa5.45□□□□□ -1.54
YBX3-213ENST00000542641 CHKB-CPT1BH3BT56 60 aa5.44□□□□□ -1.54
YBX3-213ENST00000542641 MT1FP04733 61 aa5.44□□□□□ -1.54
YBX3-213ENST00000542641 SPTSSBQ8NFR3 76 aa5.41□□□□□ -1.54
YBX3-213ENST00000542641 COA5Q86WW8 74 aa5.38□□□□□ -1.55
YBX3-213ENST00000542641 H0YAA0 97 aa5.37□□□□□ -1.55
YBX3-213ENST00000542641 ATP5EP56381 51 aaPredicted RBP5.36□□□□□ -1.55
YBX3-213ENST00000542641 TMEM258P61165 79 aa5.34□□□□□ -1.55
YBX3-213ENST00000542641 ADM2Q7Z4H4 148 aa5.34□□□□□ -1.55
YBX3-213ENST00000542641 A0A0A0MQY5 61 aa5.28□□□□□ -1.56
YBX3-213ENST00000542641 CRIPTQ9P021 101 aa5.27□□□□□ -1.57
YBX3-213ENST00000542641 P0C880 135 aa5.25□□□□□ -1.57
YBX3-213ENST00000542641 SPRR2GQ9BYE4 73 aa5.21□□□□□ -1.58
YBX3-213ENST00000542641 SEC61GP60059 68 aa5.19□□□□□ -1.58
YBX3-213ENST00000542641 USH2AO75445 5202 aa5.19□□□□□ -1.58
YBX3-213ENST00000542641 SERP1Q9Y6X1 66 aa5.18□□□□□ -1.58
YBX3-213ENST00000542641 R4GN34 69 aa5.18□□□□□ -1.58
YBX3-213ENST00000542641 M0QZ58 72 aa5.15□□□□□ -1.59
YBX3-213ENST00000542641 FSIP2Q5CZC0 6907 aa5.14□□□□□ -1.59
YBX3-213ENST00000542641 A0A1B0GU69 56 aa5.12□□□□□ -1.59
YBX3-213ENST00000542641 KRTAP19-8Q3LI54 63 aa5.12□□□□□ -1.59
YBX3-213ENST00000542641 Q5VV11 94 aa5.12□□□□□ -1.59
YBX3-213ENST00000542641 CRCT1Q9UGL9 99 aa5.12□□□□□ -1.59
YBX3-213ENST00000542641 KRTAP5-3Q6L8H2 238 aa5.09□□□□□ -1.59
YBX3-213ENST00000542641 LINC01554Q52M75 96 aa5.08□□□□□ -1.6
YBX3-213ENST00000542641 MT1BP07438 61 aa5.07□□□□□ -1.6
YBX3-213ENST00000542641 LINC01558Q9Y6Z2 57 aa5.07□□□□□ -1.6
YBX3-213ENST00000542641 A0A1B0GU33 70 aa5.06□□□□□ -1.6
YBX3-213ENST00000542641 PRR15LQ9BU68 103 aa5.06□□□□□ -1.6
YBX3-213ENST00000542641 SSPOA2VEC9 5147 aa5.06□□□□□ -1.6
YBX3-213ENST00000542641 KRTAP13-4Q3LI77 160 aa5.03□□□□□ -1.6
YBX3-213ENST00000542641 RPS28P62857 69 aaKnown RBP5.02□□□□□ -1.61
YBX3-213ENST00000542641 PLAC4Q8WY50 150 aa5.01□□□□□ -1.61
YBX3-213ENST00000542641 SMIM26A0A096LP01 95 aa5□□□□□ -1.61
YBX3-213ENST00000542641 KRTAP19-6Q3LI70 58 aa5□□□□□ -1.61
YBX3-213ENST00000542641 SPATA8Q6RVD6 105 aa5□□□□□ -1.61
YBX3-213ENST00000542641 V9GYY9 64 aa5□□□□□ -1.61
YBX3-213ENST00000542641 Q1T7F1 81 aa4.97□□□□□ -1.61
YBX3-213ENST00000542641 A0A0D9SG42 100 aa4.94□□□□□ -1.62
YBX3-213ENST00000542641 A6NN06 94 aa4.94□□□□□ -1.62
YBX3-213ENST00000542641 LCE1AQ5T7P2 110 aa4.94□□□□□ -1.62
YBX3-213ENST00000542641 PSPHP1O15172 72 aa4.92□□□□□ -1.62
YBX3-213ENST00000542641 FCGBPQ9Y6R7 5405 aaPredicted RBP4.91□□□□□ -1.62
YBX3-213ENST00000542641 UQCR11O14957 56 aa4.9□□□□□ -1.63
YBX3-213ENST00000542641 KRTAP10-5P60370 271 aa4.89□□□□□ -1.63
YBX3-213ENST00000542641 A8MU10 97 aa4.87□□□□□ -1.63
YBX3-213ENST00000542641 SPINT4Q6UDR6 99 aa4.86□□□□□ -1.63
YBX3-213ENST00000542641 PRO2289Q9P1D8 64 aa4.86□□□□□ -1.63
YBX3-213ENST00000542641 MT1XP80297 61 aa4.85□□□□□ -1.63
YBX3-213ENST00000542641 KRTAP12-1P59990 96 aa4.83□□□□□ -1.64
YBX3-213ENST00000542641 MIR22HGQ0VDD5 57 aa4.82□□□□□ -1.64
YBX3-213ENST00000542641 CAMK2N1Q7Z7J9 78 aa4.82□□□□□ -1.64
YBX3-213ENST00000542641 KRTAP12-2P59991 146 aa4.8□□□□□ -1.64
YBX3-213ENST00000542641 A6NED7 52 aa4.78□□□□□ -1.64
YBX3-213ENST00000542641 MACF1Q9UPN3 7388 aaKnown RBP4.69□□□□□ -1.66
YBX3-213ENST00000542641 K7ERS5 55 aa4.68□□□□□ -1.66
YBX3-213ENST00000542641 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
YBX3-213ENST00000542641 CDC42SE1Q9NRR8 79 aa4.62□□□□□ -1.67
YBX3-213ENST00000542641 KRTAP10-12P60413 245 aa4.6□□□□□ -1.67
YBX3-213ENST00000542641 C10orf95Q9H7T3 257 aa4.59□□□□□ -1.67
YBX3-213ENST00000542641 KRTAP2-2Q9BYT5 123 aa4.58□□□□□ -1.68
YBX3-213ENST00000542641 KMT2DO14686 5537 aa4.57□□□□□ -1.68
YBX3-213ENST00000542641 SYNE2Q8WXH0 6885 aaKnown RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms