RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 SPTSSBQ8NFR3 76 aa3.7□□□□□ -1.82
VPS53-205ENST00000541903 SMIM26A0A096LP01 95 aa3.69□□□□□ -1.82
VPS53-205ENST00000541903 S4R3F8 94 aa3.69□□□□□ -1.82
VPS53-205ENST00000541903 LCA10Q71F78 164 aa3.66□□□□□ -1.82
VPS53-205ENST00000541903 V9GYY9 64 aa3.64□□□□□ -1.83
VPS53-205ENST00000541903 KRTAP19-2Q3LHN2 52 aa3.63□□□□□ -1.83
VPS53-205ENST00000541903 CSAG1Q6PB30 78 aa3.62□□□□□ -1.83
VPS53-205ENST00000541903 Q1T7F1 81 aa3.61□□□□□ -1.83
VPS53-205ENST00000541903 KRTAP3-3Q9BYR6 98 aa3.61□□□□□ -1.83
VPS53-205ENST00000541903 MUC2Q02817 5179 aa3.6□□□□□ -1.83
VPS53-205ENST00000541903 LINC01558Q9Y6Z2 57 aa3.6□□□□□ -1.83
VPS53-205ENST00000541903 SEC61GP60059 68 aa3.59□□□□□ -1.83
VPS53-205ENST00000541903 PRR15LQ9BU68 103 aa3.59□□□□□ -1.83
VPS53-205ENST00000541903 A0A1B0GU69 56 aa3.58□□□□□ -1.84
VPS53-205ENST00000541903 LCE2CQ5TA81 110 aa3.58□□□□□ -1.84
VPS53-205ENST00000541903 PSPHP1O15172 72 aa3.56□□□□□ -1.84
VPS53-205ENST00000541903 FAT4Q6V0I7 4981 aa3.55□□□□□ -1.84
VPS53-205ENST00000541903 M0R2T5 61 aa3.54□□□□□ -1.84
VPS53-205ENST00000541903 MT1HP80294 61 aa3.54□□□□□ -1.84
VPS53-205ENST00000541903 FSIP2Q5CZC0 6907 aa3.54□□□□□ -1.84
VPS53-205ENST00000541903 Q5VV11 94 aa3.52□□□□□ -1.85
VPS53-205ENST00000541903 H0YAA0 97 aa3.51□□□□□ -1.85
VPS53-205ENST00000541903 ADM2Q7Z4H4 148 aa3.51□□□□□ -1.85
VPS53-205ENST00000541903 KRTAP3-2Q9BYR7 98 aa3.48□□□□□ -1.85
VPS53-205ENST00000541903 A0A1B0GU33 70 aa3.47□□□□□ -1.85
VPS53-205ENST00000541903 A6NED7 52 aa3.47□□□□□ -1.85
VPS53-205ENST00000541903 KRTAP10-6P60371 365 aaPredicted RBP3.47□□□□□ -1.85
VPS53-205ENST00000541903 FLGP20930 4061 aaPredicted RBP3.47□□□□□ -1.85
VPS53-205ENST00000541903 UQCR11O14957 56 aa3.46□□□□□ -1.86
VPS53-205ENST00000541903 P0C880 135 aa3.46□□□□□ -1.86
VPS53-205ENST00000541903 MIR22HGQ0VDD5 57 aa3.42□□□□□ -1.86
VPS53-205ENST00000541903 M0QZ58 72 aa3.41□□□□□ -1.86
VPS53-205ENST00000541903 LCE2AQ5TA79 106 aaPredicted RBP3.4□□□□□ -1.87
VPS53-205ENST00000541903 SPATA8Q6RVD6 105 aa3.4□□□□□ -1.87
VPS53-205ENST00000541903 BRK1Q8WUW1 75 aa3.4□□□□□ -1.87
VPS53-205ENST00000541903 CRIPTQ9P021 101 aa3.4□□□□□ -1.87
VPS53-205ENST00000541903 R4GN34 69 aa3.4□□□□□ -1.87
VPS53-205ENST00000541903 MT2AP02795 61 aa3.39□□□□□ -1.87
VPS53-205ENST00000541903 CDC42SE1Q9NRR8 79 aa3.39□□□□□ -1.87
VPS53-205ENST00000541903 CRCT1Q9UGL9 99 aa3.39□□□□□ -1.87
VPS53-205ENST00000541903 LORP23490 312 aaPredicted RBP3.38□□□□□ -1.87
VPS53-205ENST00000541903 KRTAP9-8Q9BYQ0 159 aa3.38□□□□□ -1.87
VPS53-205ENST00000541903 KRTAP10-10P60014 251 aa3.37□□□□□ -1.87
VPS53-205ENST00000541903 KRTAP13-4Q3LI77 160 aa3.37□□□□□ -1.87
VPS53-205ENST00000541903 MT1FP04733 61 aa3.36□□□□□ -1.87
VPS53-205ENST00000541903 A0A0D9SG42 100 aa3.35□□□□□ -1.87
VPS53-205ENST00000541903 A8MU10 97 aa3.34□□□□□ -1.87
VPS53-205ENST00000541903 LINC01554Q52M75 96 aa3.34□□□□□ -1.87
VPS53-205ENST00000541903 K7ERS5 55 aa3.31□□□□□ -1.88
VPS53-205ENST00000541903 KRTAP9-7A8MTY7 169 aa3.3□□□□□ -1.88
VPS53-205ENST00000541903 SPRR2GQ9BYE4 73 aa3.3□□□□□ -1.88
VPS53-205ENST00000541903 PRO0628Q9UI54 55 aa3.3□□□□□ -1.88
VPS53-205ENST00000541903 SPINT4Q6UDR6 99 aa3.28□□□□□ -1.88
VPS53-205ENST00000541903 KRTAP19-1Q8IUB9 90 aa3.28□□□□□ -1.88
VPS53-205ENST00000541903 A6NN06 94 aa3.27□□□□□ -1.89
VPS53-205ENST00000541903 KRTAP12-1P59990 96 aa3.26□□□□□ -1.89
VPS53-205ENST00000541903 KRTAP9-3Q9BYQ3 159 aa3.26□□□□□ -1.89
VPS53-205ENST00000541903 KRTAP12-2P59991 146 aa3.25□□□□□ -1.89
VPS53-205ENST00000541903 LCE2DQ5TA82 110 aaPredicted RBP3.25□□□□□ -1.89
VPS53-205ENST00000541903 KRTAP19-8Q3LI54 63 aa3.22□□□□□ -1.89
VPS53-205ENST00000541903 PLAC4Q8WY50 150 aa3.22□□□□□ -1.89
VPS53-205ENST00000541903 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.21□□□□□ -1.9
VPS53-205ENST00000541903 PMAIP1Q13794 54 aa3.21□□□□□ -1.9
VPS53-205ENST00000541903 CAMK2N1Q7Z7J9 78 aa3.2□□□□□ -1.9
VPS53-205ENST00000541903 LCE2BO14633 110 aa3.17□□□□□ -1.9
VPS53-205ENST00000541903 MT1BP07438 61 aa3.17□□□□□ -1.9
VPS53-205ENST00000541903 SYNE2Q8WXH0 6885 aaKnown RBP3.14□□□□□ -1.91
VPS53-205ENST00000541903 ROMO1P60602 79 aa3.13□□□□□ -1.91
VPS53-205ENST00000541903 C10orf95Q9H7T3 257 aa3.08□□□□□ -1.92
VPS53-205ENST00000541903 PRO2289Q9P1D8 64 aa3.08□□□□□ -1.92
VPS53-205ENST00000541903 KTN1-AS1Q86SY8 53 aa3.07□□□□□ -1.92
VPS53-205ENST00000541903 MT1XP80297 61 aa3.06□□□□□ -1.92
VPS53-205ENST00000541903 KRTAP10-5P60370 271 aa3.05□□□□□ -1.92
VPS53-205ENST00000541903 USH2AO75445 5202 aa3.03□□□□□ -1.92
VPS53-205ENST00000541903 TNP1P09430 55 aa3.03□□□□□ -1.92
VPS53-205ENST00000541903 KRTAP25-1Q3LHN0 102 aa3.03□□□□□ -1.92
VPS53-205ENST00000541903 SSPOA2VEC9 5147 aa3.02□□□□□ -1.93
VPS53-205ENST00000541903 MACF1Q9UPN3 7388 aaKnown RBP3.01□□□□□ -1.93
VPS53-205ENST00000541903 KRTAP19-6Q3LI70 58 aa3.01□□□□□ -1.93
VPS53-205ENST00000541903 NEBP20929 6669 aa3□□□□□ -1.93
VPS53-205ENST00000541903 PRAC1Q96KF2 57 aa3□□□□□ -1.93
VPS53-205ENST00000541903 FCGBPQ9Y6R7 5405 aaPredicted RBP2.98□□□□□ -1.93
VPS53-205ENST00000541903 SVIPQ8NHG7 77 aa2.95□□□□□ -1.94
VPS53-205ENST00000541903 KRTAP10-7P60409 375 aaPredicted RBP2.93□□□□□ -1.94
VPS53-205ENST00000541903 KRTAP10-12P60413 245 aa2.93□□□□□ -1.94
VPS53-205ENST00000541903 PP632Q6XCG6 107 aa2.93□□□□□ -1.94
VPS53-205ENST00000541903 KRTAP23-1A1A580 65 aa2.91□□□□□ -1.94
VPS53-205ENST00000541903 LCE3AQ5TA76 89 aa2.89□□□□□ -1.95
VPS53-205ENST00000541903 KRTAP20-1Q3LI63 56 aa2.83□□□□□ -1.96
VPS53-205ENST00000541903 GPR98Q8WXG9 6306 aa2.83□□□□□ -1.96
VPS53-205ENST00000541903 KRTAP4-8A0A0G2JLE6 195 aa2.82□□□□□ -1.96
VPS53-205ENST00000541903 KRTAP8-1Q8IUC2 63 aa2.82□□□□□ -1.96
VPS53-205ENST00000541903 KRTAP4-8Q9BYQ9 185 aa2.82□□□□□ -1.96
VPS53-205ENST00000541903 KRTAP6-3Q3LI67 103 aa2.79□□□□□ -1.96
VPS53-205ENST00000541903 MUC12Q9UKN1 5478 aa2.79□□□□□ -1.96
VPS53-205ENST00000541903 KRTAP12-3P60328 96 aa2.78□□□□□ -1.96
VPS53-205ENST00000541903 KRTAP19-5Q3LI72 72 aa2.77□□□□□ -1.97
VPS53-205ENST00000541903 KMT2DO14686 5537 aa2.75□□□□□ -1.97
VPS53-205ENST00000541903 KRTAP19-7Q3SYF9 63 aa2.72□□□□□ -1.97
VPS53-205ENST00000541903 KRTAP15-1Q3LI76 137 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms