RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 MT1HL1P0DM35 61 aa4.7□□□□□ -1.66
DDB1-217ENST00000540166 LRP1BQ9NZR2 4599 aa4.69□□□□□ -1.66
DDB1-217ENST00000540166 LYSTQ99698 3801 aa4.69□□□□□ -1.66
DDB1-217ENST00000540166 KRTAP10-4P60372 401 aaPredicted RBP4.69□□□□□ -1.66
DDB1-217ENST00000540166 C10orf95Q9H7T3 257 aa4.68□□□□□ -1.66
DDB1-217ENST00000540166 M0R2T5 61 aa4.67□□□□□ -1.66
DDB1-217ENST00000540166 DNAH6Q9C0G6 4158 aa4.66□□□□□ -1.66
DDB1-217ENST00000540166 LUZP6Q538Z0 58 aa4.66□□□□□ -1.66
DDB1-217ENST00000540166 KRTAP1-4P0C5Y4 121 aa4.66□□□□□ -1.66
DDB1-217ENST00000540166 DNAH17Q9UFH2 4485 aa4.65□□□□□ -1.67
DDB1-217ENST00000540166 FAT1Q14517 4588 aa4.63□□□□□ -1.67
DDB1-217ENST00000540166 FAT2Q9NYQ8 4349 aa4.61□□□□□ -1.67
DDB1-217ENST00000540166 PCLOQ9Y6V0 5065 aa4.61□□□□□ -1.67
DDB1-217ENST00000540166 TPRXLQ17RH7 258 aa4.6□□□□□ -1.67
DDB1-217ENST00000540166 APOBP04114 4563 aaKnown RBP4.6□□□□□ -1.67
DDB1-217ENST00000540166 ABCA13Q86UQ4 5058 aa4.6□□□□□ -1.67
DDB1-217ENST00000540166 PKHD1P08F94 4074 aa4.58□□□□□ -1.68
DDB1-217ENST00000540166 DNAH2Q9P225 4427 aa4.56□□□□□ -1.68
DDB1-217ENST00000540166 FRAS1Q86XX4 4008 aa4.55□□□□□ -1.68
DDB1-217ENST00000540166 S4R3F8 94 aa4.55□□□□□ -1.68
DDB1-217ENST00000540166 HSPG2P98160 4391 aa4.54□□□□□ -1.68
DDB1-217ENST00000540166 RPS29P62273 56 aaKnown RBP4.53□□□□□ -1.68
DDB1-217ENST00000540166 DNAH8Q96JB1 4490 aa4.53□□□□□ -1.68
DDB1-217ENST00000540166 KRTAP15-1Q3LI76 137 aa4.53□□□□□ -1.69
DDB1-217ENST00000540166 HECTD4Q9Y4D8 3996 aa4.52□□□□□ -1.69
DDB1-217ENST00000540166 KRTAP3-1Q9BYR8 98 aa4.52□□□□□ -1.69
DDB1-217ENST00000540166 PKD1P98161 4303 aa4.47□□□□□ -1.69
DDB1-217ENST00000540166 MYCBP2O75592 4640 aa4.46□□□□□ -1.7
DDB1-217ENST00000540166 KRTAP13-4Q3LI77 160 aa4.43□□□□□ -1.7
DDB1-217ENST00000540166 XP32Q5T750 250 aa4.42□□□□□ -1.7
DDB1-217ENST00000540166 VPS13BQ7Z7G8 4022 aa4.42□□□□□ -1.7
DDB1-217ENST00000540166 HERC1Q15751 4861 aa4.42□□□□□ -1.7
DDB1-217ENST00000540166 PLAC4Q8WY50 150 aa4.41□□□□□ -1.7
DDB1-217ENST00000540166 KRTAP10-6P60371 365 aaPredicted RBP4.4□□□□□ -1.7
DDB1-217ENST00000540166 KRTAP12-2P59991 146 aa4.4□□□□□ -1.7
DDB1-217ENST00000540166 LRP1Q07954 4544 aaKnown RBP4.39□□□□□ -1.71
DDB1-217ENST00000540166 M0QZ58 72 aa4.38□□□□□ -1.71
DDB1-217ENST00000540166 R4GN34 69 aa4.36□□□□□ -1.71
DDB1-217ENST00000540166 KRTAP12-1P59990 96 aa4.34□□□□□ -1.72
DDB1-217ENST00000540166 KRTAP3-2Q9BYR7 98 aa4.3□□□□□ -1.72
DDB1-217ENST00000540166 CAMK2N1Q7Z7J9 78 aa4.29□□□□□ -1.72
DDB1-217ENST00000540166 FAT3Q8TDW7 4589 aa4.29□□□□□ -1.72
DDB1-217ENST00000540166 LRP2P98164 4655 aa4.29□□□□□ -1.72
DDB1-217ENST00000540166 KRTAP3-3Q9BYR6 98 aa4.27□□□□□ -1.73
DDB1-217ENST00000540166 UBR4Q5T4S7 5183 aa4.23□□□□□ -1.73
DDB1-217ENST00000540166 PP632Q6XCG6 107 aa4.19□□□□□ -1.74
DDB1-217ENST00000540166 HMCN2Q8NDA2 5059 aa4.19□□□□□ -1.74
DDB1-217ENST00000540166 PKHD1L1Q86WI1 4243 aa4.18□□□□□ -1.74
DDB1-217ENST00000540166 RNF213Q63HN8 5207 aa4.16□□□□□ -1.74
DDB1-217ENST00000540166 KRTAP10-10P60014 251 aa4.15□□□□□ -1.74
DDB1-217ENST00000540166 KRTAP9-2Q9BYQ4 174 aa4.13□□□□□ -1.75
DDB1-217ENST00000540166 KRTAP4-1Q9BYQ7 146 aa4.09□□□□□ -1.75
DDB1-217ENST00000540166 TNP1P09430 55 aa4.04□□□□□ -1.76
DDB1-217ENST00000540166 KRTAP9-6A0A140TA67 174 aa4.03□□□□□ -1.76
DDB1-217ENST00000540166 MT1HP80294 61 aa4.03□□□□□ -1.76
DDB1-217ENST00000540166 LPAP08519 4548 aa4.02□□□□□ -1.77
DDB1-217ENST00000540166 TNXBP22105 4242 aa4□□□□□ -1.77
DDB1-217ENST00000540166 LCE2AQ5TA79 106 aaPredicted RBP3.99□□□□□ -1.77
DDB1-217ENST00000540166 CRCT1Q9UGL9 99 aa3.98□□□□□ -1.77
DDB1-217ENST00000540166 PRO2289Q9P1D8 64 aa3.93□□□□□ -1.78
DDB1-217ENST00000540166 FAT4Q6V0I7 4981 aa3.93□□□□□ -1.78
DDB1-217ENST00000540166 FSIP2Q5CZC0 6907 aa3.9□□□□□ -1.78
DDB1-217ENST00000540166 LORP23490 312 aaPredicted RBP3.89□□□□□ -1.79
DDB1-217ENST00000540166 LCE2DQ5TA82 110 aaPredicted RBP3.89□□□□□ -1.79
DDB1-217ENST00000540166 LCE2CQ5TA81 110 aa3.87□□□□□ -1.79
DDB1-217ENST00000540166 MUC2Q02817 5179 aa3.86□□□□□ -1.79
DDB1-217ENST00000540166 INE1O15225 51 aa3.84□□□□□ -1.8
DDB1-217ENST00000540166 MT2AP02795 61 aa3.79□□□□□ -1.8
DDB1-217ENST00000540166 KRTAP19-2Q3LHN2 52 aa3.77□□□□□ -1.81
DDB1-217ENST00000540166 KRTAP23-1A1A580 65 aa3.75□□□□□ -1.81
DDB1-217ENST00000540166 MT1FP04733 61 aa3.74□□□□□ -1.81
DDB1-217ENST00000540166 MUC17Q685J3 4493 aa3.72□□□□□ -1.81
DDB1-217ENST00000540166 KRTAP9-8Q9BYQ0 159 aa3.7□□□□□ -1.82
DDB1-217ENST00000540166 SPRR5A0A1B0GTR4 108 aa3.68□□□□□ -1.82
DDB1-217ENST00000540166 KRTAP9-7A8MTY7 169 aa3.66□□□□□ -1.82
DDB1-217ENST00000540166 KRTAP19-1Q8IUB9 90 aa3.66□□□□□ -1.82
DDB1-217ENST00000540166 KRTAP9-3Q9BYQ3 159 aa3.6□□□□□ -1.83
DDB1-217ENST00000540166 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.59□□□□□ -1.83
DDB1-217ENST00000540166 LCE2BO14633 110 aa3.58□□□□□ -1.84
DDB1-217ENST00000540166 LCE3AQ5TA76 89 aa3.58□□□□□ -1.84
DDB1-217ENST00000540166 FLGP20930 4061 aaPredicted RBP3.56□□□□□ -1.84
DDB1-217ENST00000540166 KRTAP19-6Q3LI70 58 aa3.49□□□□□ -1.85
DDB1-217ENST00000540166 SPRR2GQ9BYE4 73 aa3.46□□□□□ -1.86
DDB1-217ENST00000540166 KRTAP12-3P60328 96 aa3.46□□□□□ -1.86
DDB1-217ENST00000540166 KRTAP8-1Q8IUC2 63 aa3.44□□□□□ -1.86
DDB1-217ENST00000540166 SPRR2FQ96RM1 72 aa3.41□□□□□ -1.86
DDB1-217ENST00000540166 USH2AO75445 5202 aa3.41□□□□□ -1.86
DDB1-217ENST00000540166 KRTAP10-12P60413 245 aa3.39□□□□□ -1.87
DDB1-217ENST00000540166 KRTAP19-8Q3LI54 63 aa3.39□□□□□ -1.87
DDB1-217ENST00000540166 KRTAP6-3Q3LI67 103 aa3.39□□□□□ -1.87
DDB1-217ENST00000540166 KRTAP10-5P60370 271 aa3.38□□□□□ -1.87
DDB1-217ENST00000540166 MT1BP07438 61 aa3.37□□□□□ -1.87
DDB1-217ENST00000540166 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
DDB1-217ENST00000540166 SPRR2EP22531 72 aa3.34□□□□□ -1.87
DDB1-217ENST00000540166 SPRR2BP35325 72 aa3.34□□□□□ -1.87
DDB1-217ENST00000540166 SPRR2AP35326 72 aa3.34□□□□□ -1.87
DDB1-217ENST00000540166 SSPOA2VEC9 5147 aa3.34□□□□□ -1.88
DDB1-217ENST00000540166 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
DDB1-217ENST00000540166 KRTAP20-1Q3LI63 56 aa3.3□□□□□ -1.88
DDB1-217ENST00000540166 MACF1Q9UPN3 7388 aaKnown RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms